Re: [R-sig-phylo] suppress axes in phenogram()

[Jacob Berv]

Aha! Success! Thanks guys!
Cheers,
Jake

> On Jul 7, 2016, at 5:18 PM, GRAHAM JAMES SLATER  wrote:
> 
> try:
> 
> par(xaxt="n",yaxt="n")
> phenogram(tree,x)
> par(xaxt="s",yaxt="s")
> axis(1)
> 
> Graham
> --
> Graham J. Slater
> Assistant Professor
> Department of the Geophysical Sciences
> University of Chicago
> 5734 S. Ellis Avenue
> Chicago, IL 60637 USA
> 
> Tel: (773) 702-0249
> email: gsla...@uchicago.edu 
> www.fourdimensionalbiology.com 
> On Thu, Jul 7, 2016 at 4:10 PM, Jacob Berv  > wrote:
> My ugly solution is to comment out lines 195 and 196 in the phenogram code.
> Jake
> 
> > On Jul 7, 2016, at 5:06 PM, Jacob Berv  > > wrote:
> >
> > Cool - that works - but now I can’t use axis() to add custom axes…
> > Jake
> >
> >> On Jul 7, 2016, at 5:03 PM, Liam J. Revell  >>   >> >> wrote:
> >>
> >> par(xaxt="n",yaxt="n")
> >
> 
> 
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> 
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Re: [R-sig-phylo] suppress axes in phenogram()

[GRAHAM JAMES SLATER]

try:

par(xaxt="n",yaxt="n")
phenogram(tree,x)
par(xaxt="s",yaxt="s")
axis(1)

Graham
--
Graham J. Slater
Assistant Professor
Department of the Geophysical Sciences
University of Chicago
5734 S. Ellis Avenue
Chicago, IL 60637 USA

Tel: (773) 702-0249
email: gsla...@uchicago.edu
www.fourdimensionalbiology.com
On Thu, Jul 7, 2016 at 4:10 PM, Jacob Berv 
wrote:

> My ugly solution is to comment out lines 195 and 196 in the phenogram code.
> Jake
>
> > On Jul 7, 2016, at 5:06 PM, Jacob Berv 
> wrote:
> >
> > Cool - that works - but now I can’t use axis() to add custom axes…
> > Jake
> >
> >> On Jul 7, 2016, at 5:03 PM, Liam J. Revell  > wrote:
> >>
> >> par(xaxt="n",yaxt="n")
> >
>
>
> [[alternative HTML version deleted]]
>
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> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
> Searchable archive at
> http://www.mail-archive.com/r-sig-phylo@r-project.org/
>

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Re: [R-sig-phylo] suppress axes in phenogram()

[Jacob Berv]

My ugly solution is to comment out lines 195 and 196 in the phenogram code.
Jake

> On Jul 7, 2016, at 5:06 PM, Jacob Berv  wrote:
> 
> Cool - that works - but now I can’t use axis() to add custom axes…
> Jake
> 
>> On Jul 7, 2016, at 5:03 PM, Liam J. Revell > > wrote:
>> 
>> par(xaxt="n",yaxt="n")
> 


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Re: [R-sig-phylo] suppress axes in phenogram()

[Jacob Berv]

Cool - that works - but now I can’t use axis() to add custom axes…
Jake

> On Jul 7, 2016, at 5:03 PM, Liam J. Revell  wrote:
> 
> par(xaxt="n",yaxt="n")


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Re: [R-sig-phylo] suppress axes in phenogram()

[Liam J. Revell]

Hi Jacob.

You can use par, e.g.:

par(xaxt="n",yaxt="n")
phenogram(tree,x)

All the best, Liam

Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu
blog: http://blog.phytools.org

On 7/7/2016 4:51 PM, Jacob Berv wrote:

Hi all,
Does anyone know if there is an easy way to suppress the axes in phytools 
phenogram() without altering the code (which is easy to do, but inconvenient 
when using the function in multiple different contexts)? yaxt=’n’ and xaxt=’n’ 
have no effect.

Best,
Jacob Berv
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[R-sig-phylo] suppress axes in phenogram()

[Jacob Berv]

Hi all,
Does anyone know if there is an easy way to suppress the axes in phytools 
phenogram() without altering the code (which is easy to do, but inconvenient 
when using the function in multiple different contexts)? yaxt=’n’ and xaxt=’n’ 
have no effect.

Best,
Jacob Berv
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