Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi
Although, since the NSA was involved into the development of SELinux maybe it doesn't matter so much anymore :-) On Wed, 11 Sep 2013 18:42:20 -0400, Markus Sitzmann wrote: > >> And without disabling SELinux :) >> >> http://stopdisablingselinux.com/ > > I never said that is a good idea :-) > > -- > How ServiceNow helps IT people transform IT departments: > 1. Consolidate legacy IT systems to a single system of record for IT > 2. Standardize and globalize service processes across IT > 3. Implement zero-touch automation to replace manual, redundant tasks > http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk > ___ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss -- How ServiceNow helps IT people transform IT departments: 1. Consolidate legacy IT systems to a single system of record for IT 2. Standardize and globalize service processes across IT 3. Implement zero-touch automation to replace manual, redundant tasks http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi
> And without disabling SELinux :) > > http://stopdisablingselinux.com/ I never said that is a good idea :-) -- How ServiceNow helps IT people transform IT departments: 1. Consolidate legacy IT systems to a single system of record for IT 2. Standardize and globalize service processes across IT 3. Implement zero-touch automation to replace manual, redundant tasks http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi
On Thu, Sep 12, 2013 at 12:25 AM, Greg Landrum wrote: > Glad the problem is solved. And without disabling SELinux :) http://stopdisablingselinux.com/ -- Gianluca Sforna http://morefedora.blogspot.com http://identi.ca/giallu - http://twitter.com/giallu -- How ServiceNow helps IT people transform IT departments: 1. Consolidate legacy IT systems to a single system of record for IT 2. Standardize and globalize service processes across IT 3. Implement zero-touch automation to replace manual, redundant tasks http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi
Glad the problem is solved. Thanks for the link. Including something like this in the docs would be a good idea. -greg On Thursday, September 12, 2013, Michał Nowotka wrote: > Hi Greg, > > Problem solved! http://stackoverflow.com/a/18731255/940208 > Maybe setting LD_RUN_PATH before compiling it's worth a paragraph in rdkit > docs? > > Cheers, > Michał > > > On Wed, Sep 11, 2013 at 11:15 PM, greg landrum > > > wrote: > >> Hi Michal, >> >> This is, unfortunately, not easy. >> >> One solution to this (the one we use) is to modify the environment in the >> script that invokes apache and set LD_LIBRARY_PATH there.. >> >> Another easy one is to install the rdkit shared libraries into a >> directory which is in the apache user's LD_LIBRARY_PATH, maybe >> /user/local/lib? >> >> If you can't convince your sys admins to do either of these for you, then >> you will have to figure out how to use the RPATH support that cmake has: >> http://www.cmake.org/Wiki/CMake_RPATH_handling >> >> I am away from my computer until next week, so, I can't offer any real, >> help aside from pointing at that page. >> >> Once I am back I will definitely spend some time on this to see if it is >> possible to simplify the process. >> >> -greg >> >> >> On Sep 11, 2013, at 2:51 AM, Michał Nowotka >> > >> wrote: >> >> I have some problems with configuring apache to use rdkit, this is >> described in SO question: >> >> >> http://stackoverflow.com/questions/2550504/setting-ld-library-path-in-apache-passenv-setenv-still-cant-find-library >> >> Any help would be appreciated! >> >> Regards, >> Michał Nowotka >> >> >> -- >> >> How ServiceNow helps IT people transform IT departments: >> 1. Consolidate legacy IT systems to a single system of record for IT >> 2. Standardize and globalize service processes across IT >> 3. Implement zero-touch automation to replace manual, redundant tasks >> >> http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk >> >> ___ >> Rdkit-discuss mailing list >> Rdkit-discuss@lists.sourceforge.net > 'Rdkit-discuss@lists.sourceforge.net');> >> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >> >> > -- How ServiceNow helps IT people transform IT departments: 1. Consolidate legacy IT systems to a single system of record for IT 2. Standardize and globalize service processes across IT 3. Implement zero-touch automation to replace manual, redundant tasks http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi
Hi Michal, This is, unfortunately, not easy. One solution to this (the one we use) is to modify the environment in the script that invokes apache and set LD_LIBRARY_PATH there.. Another easy one is to install the rdkit shared libraries into a directory which is in the apache user's LD_LIBRARY_PATH, maybe /user/local/lib? If you can't convince your sys admins to do either of these for you, then you will have to figure out how to use the RPATH support that cmake has: http://www.cmake.org/Wiki/CMake_RPATH_handling I am away from my computer until next week, so, I can't offer any real, help aside from pointing at that page. Once I am back I will definitely spend some time on this to see if it is possible to simplify the process. -greg On Sep 11, 2013, at 2:51 AM, Michał Nowotka wrote: > I have some problems with configuring apache to use rdkit, this is described > in SO question: > > http://stackoverflow.com/questions/2550504/setting-ld-library-path-in-apache-passenv-setenv-still-cant-find-library > > Any help would be appreciated! > > Regards, > Michał Nowotka > -- > How ServiceNow helps IT people transform IT departments: > 1. Consolidate legacy IT systems to a single system of record for IT > 2. Standardize and globalize service processes across IT > 3. Implement zero-touch automation to replace manual, redundant tasks > http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk > ___ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss -- How ServiceNow helps IT people transform IT departments: 1. Consolidate legacy IT systems to a single system of record for IT 2. Standardize and globalize service processes across IT 3. Implement zero-touch automation to replace manual, redundant tasks http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] problem with RDKit configuration on apache and wsgi
Hi Greg, Problem solved! http://stackoverflow.com/a/18731255/940208 Maybe setting LD_RUN_PATH before compiling it's worth a paragraph in rdkit docs? Cheers, Michał On Wed, Sep 11, 2013 at 11:15 PM, greg landrum wrote: > Hi Michal, > > This is, unfortunately, not easy. > > One solution to this (the one we use) is to modify the environment in the > script that invokes apache and set LD_LIBRARY_PATH there.. > > Another easy one is to install the rdkit shared libraries into a directory > which is in the apache user's LD_LIBRARY_PATH, maybe /user/local/lib? > > If you can't convince your sys admins to do either of these for you, then > you will have to figure out how to use the RPATH support that cmake has: > http://www.cmake.org/Wiki/CMake_RPATH_handling > > I am away from my computer until next week, so, I can't offer any real, > help aside from pointing at that page. > > Once I am back I will definitely spend some time on this to see if it is > possible to simplify the process. > > -greg > > > On Sep 11, 2013, at 2:51 AM, Michał Nowotka wrote: > > I have some problems with configuring apache to use rdkit, this is > described in SO question: > > > http://stackoverflow.com/questions/2550504/setting-ld-library-path-in-apache-passenv-setenv-still-cant-find-library > > Any help would be appreciated! > > Regards, > Michał Nowotka > > > -- > > How ServiceNow helps IT people transform IT departments: > 1. Consolidate legacy IT systems to a single system of record for IT > 2. Standardize and globalize service processes across IT > 3. Implement zero-touch automation to replace manual, redundant tasks > http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk > > ___ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss > > -- How ServiceNow helps IT people transform IT departments: 1. Consolidate legacy IT systems to a single system of record for IT 2. Standardize and globalize service processes across IT 3. Implement zero-touch automation to replace manual, redundant tasks http://pubads.g.doubleclick.net/gampad/clk?id=5127&iu=/4140/ostg.clktrk___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
