Source: brian Version: 1.4.1-3 Severity: serious Justification: fails to build from source User: reproducible-builds@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-builds@lists.alioth.debian.org
Dear Maintainer, brian fails to build from source in unstable/amd64: [..] brian.stateupdater: INFO Solving linear equations numerically brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1781:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/build/.cache/scipy/python27_compiled/sc_90e487a2aefd5b25f36d2d8f047c1c640.cpp:23: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.threshold : WARNING Using codegen PythonThreshold brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.threshold : WARNING Using codegen PythonThreshold brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.threshold : WARNING Using codegen PythonThreshold brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.threshold : WARNING Using codegen CThreshold brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1781:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/build/.cache/scipy/python27_compiled/sc_7cde335454d7a01c94e156351410d8fa0.cpp:22: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ brian.threshold : WARNING Using codegen CThreshold brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1781:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/build/.cache/scipy/python27_compiled/sc_8a936c24db01d47260e4676437570ae90.cpp:22: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. brian.HomogeneousPoissonThreshold: WARNING HomogeneousPoissonThreshold cannot generate enough spikes. ok Test various ways of constructing a TimedArray. ... ok Test various ways of accessing a TimedArray. ... ok Test using a TimedArray for setting values of a NeuronGroup. ... brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically ok Names ... ok Each of the following functions f(x) should use units if they are passed a ... /home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/unitsafefunctions.py:84: RuntimeWarning: invalid value encountered in arcsin return func(x) /home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/unitsafefunctions.py:84: RuntimeWarning: invalid value encountered in arccos return func(x) /home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/fundamentalunits.py:717: RuntimeWarning: invalid value encountered in arccosh return Quantity.with_dimensions(numpy.arccosh(float(self)), self.dim) /home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/unitsafefunctions.py:84: RuntimeWarning: invalid value encountered in arctanh return func(x) ok brian.tests.testutils.test_dynamicarray.test_dynamicarray ... ok brian.tests.testutils.test_savesynapses.test_save_load_builtin ... brian.equations : INFO Free variables: ['ms'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.equations : INFO Free variables: ['ms'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.synapses : DEBUG CODE: _post_neurons = _post.data.take(_synapses) _perm = _post_neurons.argsort() _aux = _post_neurons.take(_perm) _flag = empty(len(_aux)+1, dtype=bool) _flag[0] = _flag[-1] = 1 not_equal(_aux[1:], _aux[:-1], _flag[1:-1]) _F = _flag.nonzero()[0][:-1] logical_not(_flag, _flag) while len(_F): _u = _aux.take(_F) _i = _perm.take(_F) _target_v[_u]+=w[_synapses[_i]] _F += 1 _F = extract(_flag.take(_F), _F) brian.equations : INFO Free variables: ['second'] brian.stateupdater: INFO Linear model: using exact updates brian.stateupdater: INFO Solving linear equations numerically brian.synapses : DEBUG CODE: _post_neurons = _post.data.take(_synapses) _perm = _post_neurons.argsort() _aux = _post_neurons.take(_perm) _flag = empty(len(_aux)+1, dtype=bool) _flag[0] = _flag[-1] = 1 not_equal(_aux[1:], _aux[:-1], _flag[1:-1]) _F = _flag.nonzero()[0][:-1] logical_not(_flag, _flag) while len(_F): _u = _aux.take(_F) _i = _perm.take(_F) _target_v[_u]+=z[_synapses[_i]] _F += 1 _F = extract(_flag.take(_F), _F) ok brian.tests.testutils.test_sparse.test_sparse_matrix ... ok brian.tests.testutils.test_statistics.test_group_correlations ... ok ====================================================================== ERROR: brian.tests.testfeatures.test_propagation.test_structures ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/tests/testfeatures/test_propagation.py", line 24, in test_structures run(2 * ms) File "/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/network.py", line 929, in run report=report, report_period=report_period) File "/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/network.py", line 540, in run self.prepare() File "/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/network.py", line 322, in prepare subgroups = dict.fromkeys([(C.source, C.delay) for C in self.connections], None) TypeError: unhashable type: 'DenseConstructionMatrix' -------------------- >> begin captured logging << -------------------- brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically brian.equations: INFO: Free variables: ['second'] brian.stateupdater: INFO: Linear model: using exact updates brian.stateupdater: INFO: Solving linear equations numerically --------------------- >> end captured logging << --------------------- ====================================================================== ERROR: Test accessing the contents of a ConnectionMatrix after construction ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/usr/lib/python2.7/dist-packages/nose/util.py", line 620, in newfunc return func(*arg, **kw) File "/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/tests/__init__.py", line 46, in wrapper func(*args, **kwds) File "/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/tests/testinterface/test_connection.py", line 255, in test_access C.compress() File "/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/connections/connection.py", line 285, in compress self.W = self.W.connection_matrix() File "/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/connections/constructionmatrix.py", line 79, in connection_matrix return DynamicConnectionMatrix(self, **self.init_kwds) File "/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1/debian/tmp/usr/lib/python2.7/dist-packages/brian/connections/connectionmatrix.py", line 530, in __init__ counts = numpy.histogram(allj, numpy.arange(val.shape[1] + 1, dtype=int), new=True)[0] TypeError: histogram() got an unexpected keyword argument 'new' ---------------------------------------------------------------------- Ran 65 tests in 30.168s FAILED (errors=2) Repeating test test_with_variable_delays with options: {'useweave': False} Repeating test test_with_variable_delays with options: {'useweave': True} Repeating test test_without_delays with options: {'useweave': False} Repeating test test_without_delays with options: {'useweave': True} Saving is a success Repeating test test_access with options: {'useweave': False} Repeating test test_construction with options: {'useweave': False} Repeating test test_construction with options: {'useweave': True} Repeating test test_linear_filtering with options: {'useweave': False} Repeating test test_linear_filtering with options: {'useweave': True} Repeating test test_middleear with options: {'useweave': False} Repeating test test_middleear with options: {'useweave': True} Repeating test test_multichannel_processing with options: {'useweave': False} Gammatone DRNL TanCarney Repeating test test_multichannel_processing with options: {'useweave': True} Gammatone DRNL TanCarney [ 0. 0. 0. 0. 0. 0. 0. 0. 0. 0.] [ 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2. 2.] Spike count Data 10 CPU [13 13 15 14 13 15 15 14 13 12] Offline [2 2 4 2 1 4 3 3 3 2] Online [2 2 4 2 1 4 3 3 3 2] max error : 0.000000 [MagicNetwork] Groups: ['140653080714256'] [MagicNetwork] Connections: [] [MagicNetwork] Operations: [] [MagicNetwork] Groups: [] [MagicNetwork] Connections: [] [MagicNetwork] Operations: [] [MagicNetwork] Groups: ['140653080714256'] [MagicNetwork] Connections: [] [MagicNetwork] Operations: [] [MagicNetwork] Groups: [] [MagicNetwork] Connections: [] [MagicNetwork] Operations: [] [MagicNetwork] Groups: ['140653080714256'] [MagicNetwork] Connections: [] [MagicNetwork] Operations: [] Repeating test test with options: {'usecodegen': False, 'useweave': False} Repeating test test with options: {'usecodegen': False, 'useweave': True} Repeating test test with options: {'usecodegen': True, 'useweave': False, 'usecodegenreset': True} Repeating test test with options: {'usecodegen': True, 'useweave': True, 'usecodegenreset': True, 'usecodegenweave': True} Repeating test test_stdp with options: {'usecstdp': False, 'useweave': False} Repeating test test_stdp with options: {'usecstdp': True, 'useweave': True} Repeating test test with options: {'usecodegen': False, 'useweave': False} Repeating test test with options: {'usecodegen': False, 'useweave': True} Repeating test test with options: {'usecodegen': True, 'useweave': False, 'usecodegenthreshold': True} Repeating test test with options: {'usecodegen': True, 'useweave': True, 'usecodegenthreshold': True, 'usecodegenweave': True} debian/rules:37: recipe for target 'override_dh_auto_install' failed make[1]: *** [override_dh_auto_install] Error 1 make[1]: Leaving directory '/home/lamby/temp/cdt.20160118093221.T7TISOkJO9/brian-1.4.1' debian/rules:30: recipe for target 'binary' failed make: *** [binary] Error 2 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
brian.1.4.1-3.unstable.amd64.log.txt.gz
Description: Binary data
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