[rkward-devel] Make plugintests fails

2009-09-30 Thread I. Soumpasis
I am trying long time now the plugintests. I have the RKWard svn. In the
source directory, I run the cmake ., make and make install. The installation
is complete and there are no problems. After that I try the make
plugintests. The result is the following message:

RKWard either could not find its resource files at all, or only an old
version of those files. The most likely cause is that the last installation
failed to place the files in the correct place. This can lead to all sorts
of problems, from single missing features to complete failure to function.
You should quit RKWard, now, and fix your installation. For help with that,
see http://p.sf.net/rkward/compiling.;

Any idea about this? The folder of tests exists. I'm with ubuntu linux with
self-compiled R-2.9.2.

Regards,
Ilias
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Re: [rkward-devel] Make plugintests fails

2009-09-30 Thread I. Soumpasis
Hi,

2009/9/30 Thomas Friedrichsmeier thomas.friedrichsme...@ruhr-uni-bochum.de

 Hi,

 On Wednesday 30 September 2009, I. Soumpasis wrote: Please take a look at
 the first path(s) listed in
kde4-config --path data


This gives these folders
/home/user/.kde/share/apps/:/usr/share/kde4/apps/

This part had /home/user/.kde/share/apps/rkward and I deleted. After
re-installation it is there again empty. Still I get the same message.

and look for any rkward leftovers. (Probably you installed to a local path,
 some time before, but to /usr this time?)


I made a 'make install' and I see that rkward installs for me in  a local
folder folder /usr/local/share/apps/rkward/.

I forgot to tell that I have ubuntu 8.10 with 4.1.4.

Regards,
Ilias
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Re: [rkward-devel] [rkward-users] Call for testing: RKWard 0.5.1-pre3 / release schedule

2009-07-26 Thread I. Soumpasis
Hi Thomas,
This issue is fixed in pre-4. It still takes some time to load the PHP
script (about 25-30 sec for the histogram on a netbook intel atom 1.6Ghz and
I MB of RAM with XP).

Ilias

2009/7/24 Thomas Friedrichsmeier thomas.friedrichsme...@ruhr-uni-bochum.de

 On Tuesday 21 July 2009, I. Soumpasis wrote:
  C:/Documents and Settings/User/.rkward//rk_out.html
 
   If you try to locate and open that file from the windows explorer, does
   it exist, and does it have the expected HTML output?
 
  I found yeap and it does have the expected output the output of the
 plugins
  and the output of the R console that I tried from time to time.

 Ok, thanks for the info. Somehow I could not reproduce the problem in my
 windows installation, even though the path looks very similar for me (also
 with spaces). I have made a change that will hopefully fix this problem,
 but
 without being able to reproduce the bug, I can't really test.

 I will announce a -pre4 release for both windows and linux, shortly. Please
 give that a try.

 Regards
 Thomas


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Re: [rkward-devel] [rkward-users] Call for testing: RKWard 0.5.1-pre3 / release schedule

2009-07-20 Thread I. Soumpasis
2009/7/20 Thomas Friedrichsmeier thomas.friedrichsme...@ruhr-uni-bochum.de

Possibly, yes, or possibly it's another spaces-in-the-path issue. I did not
 get around to test this on windows, yet. For completeness, could you post
 the
 output of
   rk.get.output.html.file()
 in the R Console?


C:/Documents and Settings/User/.rkward//rk_out.html


 If you try to locate and open that file from the windows explorer, does it
 exist, and does it have the expected HTML output?


I found yeap and it does have the expected output the output of the plugins
and the output of the R console that I tried from time to time.

Regards
Ilias
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Re: [rkward-devel] [rkward-users] Call for testing: RKWard 0.5.1-pre3 / release schedule

2009-07-14 Thread I. Soumpasis
As an update I tried through the R console to send a graph at the output and
failed.
rk.graph.on()
x-rnorm(1000)
hist(x)
rk.graph.off()
null device

The same with printing

rk.print(mean(x))

Could it be the same issue as above with the extra slash?

Ilias

2009/7/12 I. Soumpasis nono@gmail.com



 2009/7/12 I. Soumpasis nono@gmail.com


 BTW, I got a netbook with windows XP and 1MB RAM, and RKWard runs fine
 (with the exception of PHP and the above issue).


 Well, actually about the PHP issue, it loads faster, but when I click
 submit, it takes me to the output, but the output is empty. If e.g you
 select a histogram, you can preview it right, but when you submit the
 histogram is not in the output. Does anybody else has the same problem?

 Ilias

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Re: [rkward-devel] [rkward-users] Call for testing: RKWard 0.5.1-pre3 / release schedule

2009-07-12 Thread I. Soumpasis
Hi Thomas,

A small bug in the windows version, now that I had the time to play. The CD
to script directory does not work because of the slash before C:, See the
example below.

setwd (/C:/PHD-11-07-09/Python_R/scientific_R/rs)
Error in eval(expr, envir, enclos) : cannot change working directory

setwd (C:/PHD-11-07-09/Python_R/scientific_R/rs)
this works.

The same problem applies when somebody tries to load a workspace. However
the problem does not exist in loading script files.

BTW, I got a netbook with windows XP and 1MB RAM, and RKWard runs fine (with
the exception of PHP and the above issue).

Regards,
Ilias

2009/6/30 Thomas Friedrichsmeier thomas.friedrichsme...@ruhr-uni-bochum.de

 Hi all,

 I've prepared new preview release of the upcoming RKWard 0.5.1, and would
 like
 to ask you to do some testing:
 http://rkward.sf.net/temp/rkward-0.5.1-pre3.tar.gz

 A windows .exe will probably follow tomorrow. It will be linked on the
 download page:

 http://sourceforge.net/apps/mediawiki/rkward/index.php?title=Download_RKWard.

 The release schedule is available in the wiki, this time, at

 http://sourceforge.net/apps/mediawiki/rkward/index.php?title=Release_Schedule
 .

 As you can see the period for testing / translations is quite long, with
 the
 deadline at July, 20th for both. I will be away from E-Mail during much of
 that time, but I'll make sure to look at everything that you report.

 The targetted date for the final release is July, 28th.

 Regards
 Thomas


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Re: [rkward-devel] [rkward-users] Call for testing: RKWard 0.5.1-pre3 / release schedule

2009-07-12 Thread I. Soumpasis
2009/7/12 I. Soumpasis nono@gmail.com


 BTW, I got a netbook with windows XP and 1MB RAM, and RKWard runs fine
 (with the exception of PHP and the above issue).


Well, actually about the PHP issue, it loads faster, but when I click
submit, it takes me to the output, but the output is empty. If e.g you
select a histogram, you can preview it right, but when you submit the
histogram is not in the output. Does anybody else has the same problem?

Ilias
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Re: [rkward-devel] [rkward-users] RKWard 0.5.1-pre2: First preview of RKWard on Windows

2009-06-15 Thread I. Soumpasis
Hi Thomas!

Great news! I will try it ASAP. Are the any specs for R in windows (2.7.0
or something like that)?

Ilias

2009/6/15 Thomas Friedrichsmeier thomas.friedrichsme...@ruhr-uni-bochum.de

 Hi,


 this is to announce the first preview release of RKWard running on MS
 Windows. If you have that other OS available, please give this a try:
 http://rkward.sourceforge.net/temp/install_rkward_0.5.1-pre2.exe . I fully
 expect there are still a lot of issues, including potential problems with
 the installer, but I think we are ready for a first round of testing.


 A number of significant changes have happened on the Linux/BSD platform as
 well (see
 http://sourceforge.net/apps/mediawiki/rkward/index.php?title=Feature_Planfor 
 some of them), and if you would like to see them now, the usual source
 tarball is here:
 http://rkward.sourceforge.net/temp/rkward-0.5.1-pre2.tar.gz .


 An official 0.5.1-release is not yet scheduled, and is probably still some
 time away. A release timeline will be announced whenever a release is
 nearing, and as usual we will allot time for testing, translating and
 packaging. Still, with the summer vacation-season coming up, translators may
 want to start updating translations for 0.5.1-pre2, just in case.


 Regards
 Thomas


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[rkward-devel] cmake fails to find R library folder

2009-05-26 Thread I. Soumpasis
Hi all,

After the last update in svn cmake fails to find the R library folder. I am
pasting the messages from the cmake.

-- Found Qt-Version 4.4.3 (using /usr/bin/qmake)
-- Found X11: /usr/lib/libX11.so
-- Found Automoc4: /usr/bin/automoc4
-- Found Perl: /usr/bin/perl
-- Found KDE 4.1 include dir: /usr/include
-- Found KDE 4.1 library dir: /usr/lib
-- Found KDE4 kconfig_compiler preprocessor: /usr/bin/kconfig_compiler
-- Found automoc4: /usr/bin/automoc4
-- Looking for R executable
-- Specified by user
-- Using R at /usr/bin/R
-- Quering R for CPP flags
-- CPP flags are '-I/opt/R/include'
-- Quering R for LD flags
-- LD flags are '-L/opt/R/lib -lR'
-- Checking for R package library location to use
-- Not detected and not specified.
CMake Error at rkward/rbackend/FindR.cmake:100 (MESSAGE):
  No existing library location found
Call Stack (most recent call first):
  rkward/rbackend/CMakeLists.txt:1 (INCLUDE)


-- Configuring done

I forced the path with -DR_LIBDIR and cmake worked.

cmake -DR_LIBDIR=/opt/R/library .
-- Found Qt-Version 4.4.3 (using /usr/bin/qmake)
-- Found X11: /usr/lib/libX11.so
-- Found Automoc4: /usr/bin/automoc4
-- Found Perl: /usr/bin/perl
-- Found KDE 4.1 include dir: /usr/include
-- Found KDE 4.1 library dir: /usr/lib
-- Found KDE4 kconfig_compiler preprocessor: /usr/bin/kconfig_compiler
-- Found automoc4: /usr/bin/automoc4
-- Looking for R executable
-- Specified by user
-- Using R at /opt/R/bin/R
-- Quering R for CPP flags
-- CPP flags are '-I/opt/R/include'
-- Quering R for LD flags
-- LD flags are '-L/opt/R/lib -lR'
-- Checking for R package library location to use
-- Location specified by user
-- Will use /opt/R/library
-- Configuring done
-- Generating done

The make provided a new message:

[ 99%] Building CXX object
rkward/CMakeFiles/rkward.bin.dir/rkwardapplication.o
Linking CXX executable rkward.bin
/usr/bin/ld: warning: libRblas.so, needed by /opt/R/lib/libR.so, not found
(try using -rpath or -rpath-link)
/opt/R/lib/libR.so: undefined reference to `zgemm_'
/opt/R/lib/libR.so: undefined reference to `daxpy_'
/opt/R/lib/libR.so: undefined reference to `dscal_'
/opt/R/lib/libR.so: undefined reference to `dnrm2_'
/opt/R/lib/libR.so: undefined reference to `dgemm_'
/opt/R/lib/libR.so: undefined reference to `dtrsm_'
/opt/R/lib/libR.so: undefined reference to `dcopy_'
/opt/R/lib/libR.so: undefined reference to `dsyrk_'
/opt/R/lib/libR.so: undefined reference to `dasum_'
/opt/R/lib/libR.so: undefined reference to `ddot_'
/opt/R/lib/libR.so: undefined reference to `drotg_'
/opt/R/lib/libR.so: undefined reference to `drot_'
/opt/R/lib/libR.so: undefined reference to `dswap_'
collect2: ld returned 1 exit status
make[2]: *** [rkward/rkward.bin] Error 1
make[1]: *** [rkward/CMakeFiles/rkward.bin.dir/all] Error 2
make: *** [all] Error 2

This is strange because libR.so and libRblas.so are in the same folder.

Regards,
Ilias
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Re: [rkward-devel] cmake fails to find R library folder

2009-05-26 Thread I. Soumpasis
Hi Thomas,

I checked the latest version of svn (2503) and both cmake and make worked
fine. :)

Regards,
Ilias

2009/5/26 I. Soumpasis nono@gmail.com



 2009/5/26 Thomas Friedrichsmeier 
 thomas.friedrichsme...@ruhr-uni-bochum.de




 ok, thanks for reporting this soon. I guess I'll have to back out that
 change.
 One question though:



  -- Checking for R package library location to use
  -- Not detected and not specified.
  CMake Error at rkward/rbackend/FindR.cmake:100 (MESSAGE):
  No existing library location found


 What does
 R CMD sh -c 'echo $R_LIBS:$R_LIBS_SITE'
 print?


 Hi Thomas

 Actually prints nothing.

 R CMD sh -c 'echo $R_LIBS:$R_LIBS_SITE'
 :

 I compiled R myself in the /opt directory and I made a link of the
 executable R in the /usr/bin directory. I assume that this makes rkward find
 the R directory. Still it is strange that finds correct the R directory the
 R/lib directory but fails with the R/library.

 Regards,
 Ilias


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Re: [rkward-devel] How to deal with binary packages?

2009-05-08 Thread I. Soumpasis
2009/5/7 Prasenjit Kapat kap...@gmail.com



 Another issue: Will rkward compiled against KDE 4.2.x work on KDE
 4.1.x? Probably not!


I will keep the 8.10 32bit and 64bit installations for some time more due to
some python bugs. So I offer myself on compiling for 8.10 and KDE 4.1.x and
ubuntu's R version. Once the deb-src of latest rkward is uploaded I can make
the debs if you want.

Regards,
Ilias
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Re: [rkward-devel] How to deal with binary packages?

2009-05-07 Thread I. Soumpasis
2009/5/6 Thomas Friedrichsmeier thomas.friedrichsme...@ruhr-uni-bochum.de


 The launchpad for ubuntu idea suggested by Prasenjit sounds good to me. I
 think it probably makes sense to use distribution-specific mechanisms like
 this as well, as long as the Binaries and Build Scripts page has the
 relevant
 and up-to-date instructions to find there.


Hi

I would like to drop to your attention the R repositories for some distros
that can be found at http://cran.r-project.org/bin/linux/.

I consider that they target a different group of users that want the latest
of all. For example the latest ubuntu will not have R-2.9.0. However,
although these repos may provide with the latestof R, there is always a
(small) risk of breaking some things in the distro. The advantage of these
repo is that provides with binaries (at least for ubuntu) for many version
of the distribution and the latest R and the packages available. I can see
that in some older versions they had rkward bur not anymore. Maybe a contact
with the maintainers could help. Just an idea.

Regards,
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Re: [rkward-devel] [rkward-users] Preview releases of RKWard 0.4.9b and 0.5.0d

2009-05-01 Thread I. Soumpasis
2009/4/30 I. Soumpasis nono@gmail.com



 2009/4/30 Thomas Friedrichsmeier 
 thomas.friedrichsme...@ruhr-uni-bochum.de

  The same problem in the 32bit ubuntu. Could it be a problem with

  integration with gnome? I assume that all of you have KDE and I have
 gnome.

 Possibly, yes. If it's not too much to ask, could you run
apt-get install kdebase
 and start a KDE session on the same machine? If that solves the shortcut
 issue, then at least we know where the problem comes from.


 Well I tried. I installed  kdebase and kde-core but still does not work.
 However many packages are missing from a full installation of KDE. Anyhow,
 if nobody can reproduce it let's leave it in low priority. I think that the
 problem probably is somewhere in the R console, because the ctrl+v shortcut
 works in the script editor, the Help Search, but not in R Console.


Some new info. I detached the R console and interestingly the ctrl-+V
shortcut worked. Attached again and stopped working.

Regards,
Ilias
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Re: [rkward-devel] How to deal with binary packages?

2009-05-01 Thread I. Soumpasis
2009/4/30 Thomas Friedrichsmeier thomas.friedrichsme...@ruhr-uni-bochum.de


 So how to handle this?
 1) Upload all contributed packages to the sourceforge download page. In
 case
 this is your favorite, there's a catch, though: I'd like to delegate most
 of
 the work to another person. Making file-releases is a cumbersome process,
 already, and I don't want it to take up yet more of my time. Volunteers?

 1b) Upload to a regular directory on an HTTP-server (like
 http://rkward.sf.net/temp/). Possibly slightly easier to handle, but still
 I'd like to delegate that task.

 2) Have most packages hosted somewhere else, and simply keep a list of
 links
 to those packages. Somewhat similar to

 http://rkward.sourceforge.net/wiki/index.php?title=Binaries_and_Build_Scripts
 (or

 http://apps.sourceforge.net/mediawiki/rkward/index.php?title=Binaries_and_Build_Scripts
 in the new wiki). However, we'd probably re-organize this page a bit, and
 try
 to make it more prominent (by advertising it as the primary download page).

 +1 for two. I made a few binaries for ubuntu because of the fast change of
rkward and R the last month and send a binary to somebody from the list who
asked for 64bit version. I do not consider my self packager, since the work
for debian was made. I just had the ubuntu and R version needed and compiled
them.

Of course if somebody wants to build unofficial binaries nobody can stop
him. He can uploaded wherever he/she wants. I have seen that many times in
ubuntuforums for projects only with source that were somehow famous and
there were requests for binaries. But always these binaries were unofficial.

Another option is to have a list of people that can make binaries and their
distributions. So when the time comes for a release these people are
contacted and make also the binaries. These could help having official
binaries for rkward. This could work like the translation of rkward when a
new release is coming up there is a call. Just an idea.

Regards,
Ilias
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Re: [rkward-devel] [rkward-users] Preview releases of RKWard 0.4.9b and 0.5.0d

2009-04-30 Thread I. Soumpasis
2009/4/30 I. Soumpasis nono@gmail.com



 2009/4/30 Thomas Friedrichsmeier 
 thomas.friedrichsme...@ruhr-uni-bochum.de


  Yeap I mean R console and I get the message  QAction::eventFilter:
  Ambiguous shortcut overload: Ctrl+V in the terminal running in the
  background.

 I can't reproduce this problem, either. Does anybody else see this
 problem?
 Could you give a few details of your system (KDE 3 or KDE 4 desktop
 running,
 version of kdelibs/Qt)?


 The kdelibs are of version 4.1.4  (ubuntu package
 4:4.1.4-0ubuntu1~intrepid1.1). libqt is of version 4.4.3 (ubuntu package
 4.4.3-0ubuntu1.2). I have only 64bit version here. I will try later on the
 32-bit. Could this be a problem?


The same problem in the 32bit ubuntu. Could it be a problem with integration
with gnome? I assume that all of you have KDE and I have gnome. Or a library
of KDE not needed to be built but needed to work?

Regards,
Ilias
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Re: [rkward-devel] Preview releases of RKWard 0.4.9b and 0.5.0d

2009-04-29 Thread I. Soumpasis
2009/4/29 Thomas Friedrichsmeier thomas.friedrichsme...@ruhr-uni-bochum.de

 Hi!


Hi Thomas,

Thanks for the new releases. I fixed some fuzzy problems and a few new
strings on the greek translation. I uploaded it on svn.

Regarding the problems that I have noticed earlier.

The autoscroll when installing packages is working again. :)

The Ctrl+V shortcut on the terminal does not work. The message is
QAction::eventFilter: Ambiguous shortcut overload: Ctrl+V
I don't know if it helps and if it can be fixed.

Finally, the floating toolbars sometimes they go too right (out of rkward).
I was thinking that maybe a re-organisation (2 lines toolbars) can solve the
problem. I 'll take a look again later.

Regards,
Ilias
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Re: [rkward-devel] Getting ready to release RKWard 0.5.0c - Call for testing

2009-03-27 Thread I. Soumpasis
Hello everybody!

I am using the svn version extensively the last months (mainly for
scripting) on ubuntu 8.10 with kde 4.1.4 and R 2.8.1 on both i386 and and
X86_64. Both R and RKWard are compiled from sources.

The only problem I have found is a floating toolbar (run selection etc)
which forgets its position everytime I restart rkward and goes to the very
right end of toolbars showing only one button. Exporting images, pdfs,
printing, scripting generally works well and i have nothing to report. Also
there is a prroblem (but i think this is mentioned) with the copy-paste
shortcuts in the terminal.

Finally, I tried the greek translation and i did not find any untranslated
or problematic string.

Regards,
Ilias
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Re: [rkward-devel] Preview releases of RKWard 0.5.0b and 0.4.9a

2008-04-18 Thread I. Soumpasis
Στις 18 Απρίλιος 2008 9:58 πμ,ο χρήστης I. Soumpasis [EMAIL PROTECTED]
έγραψε:



 Στις 17 Απρίλιος 2008 9:34 πμ,ο χρήστης I. Soumpasis [EMAIL PROTECTED]
 έγραψε:

 
 
  2008/4/17 I. Soumpasis [EMAIL PROTECTED]:
 
  
  
   2008/4/15 Thomas Friedrichsmeier 
   [EMAIL PROTECTED]:
  
   
Here are the download links:
KDE 3: http://rkward.sourceforge.net/temp/rkward-0.4.9a-pre1.tar.gz
KDE 4: http://rkward.sourceforge.net/temp/rkward-0.5.0b-pre1.tar.gz
   
  
   Hi
  
   I'll try to do some light testing for both. The last months are busy,
   but these days are even more.
  
   
Do they need R 2.7.0? Trying compiling with R 2.6.2 gave me the
  mistake
  rembedinternal.cpp:481: error: 'R_timeout_handler' was not declared in
  this scope
 
  
   
 I tried again with 2.6.2 and worked. Then  I downloaded R-latest (18/04)
 and compiled it and worked again. I will try to do some testing. I will also
 try to build again 2.5.0.

 I tried 0.5.0 and compiled right both with ubuntu's 2.6.2 and
self-compiled 2.7.0 rc.

By  the way the problem i had with the code completion blinking very fast is
now fixed. :)

For any problem -if any -  i will come back again.

Ilias
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Re: [rkward-devel] compiling issues (0.4.8a) on gutsy

2007-11-14 Thread I. Soumpasis
2007/11/14, Thomas Friedrichsmeier 
[EMAIL PROTECTED]:

 Hi,



 Does anybody else use a fresh gutsy installation? If so, could you check
 a) the default version of gcc:
 # gcc --version


 gcc (GCC) 4.1.3 20070929 (prerelease) (Ubuntu 4.1.2-16ubuntu2)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

b) the version R was built with
 # ldd /usr/lib/R/lib/libR.so | grep fortran


I have a custom installation of R.
libgfortran.so.2 = /usr/lib/libgfortran.so.2 (0xb7c54000)

c) the version R thinks should be used for compilation:
 # R CMD config CC
 and post the output?


gcc -std=gnu99



 a second symlink was missing and resulted in a ld: cannot find
 -lgfortran
  error. to fix that, a
ln -s /usr/lib/lgfortran.so.2.0.0 /usr/lib/lgfortran.so
  would suffice.

 Same issue, actually, since the 4.1 version of gfortran was used, while
 the
 4.2 version should have been used.


I had this problem. I installed some more fortran packages and the problem
was solved. Also libR.so did not have libgfortran.so.2. Now I recompiled and
there is the fortran library.

Regards,
Ilias
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Re: [rkward-devel] KDE 4 status update

2007-11-02 Thread I. Soumpasis
2007/11/2, Thomas Friedrichsmeier [EMAIL PROTECTED]
:

 On Wednesday 31 October 2007, I. Soumpasis wrote:
  The Shift+Fx combination is reserved?

 The Shift+Fx shortcuts seem to be available, indeed. I guess it will
 become
 Shift+F7,8,9 for Run line, selection, all, then.


Great!

 Yeap. Although I do not write anything it pops out every few milliseconds.
  It is more like it tries to disappear but it doesn't. And you cannot
  concetrate because it is flashing. I use compiz and because of the small
  delay to disappear a window maybe it is more annoying. I made some more
  testing. If I hit with the mouse somewhere in the script file stops to
  flash and remains constant and I can write. Else I still loose the first
  keystroke.

 See my other mail. I assume it's a kdelibs issue. But please remind me
 later,
 if the problem persists.


Ok. No prob.


Regards,
Ilias
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Re: [rkward-devel] KDE 4 status update

2007-10-30 Thread I. Soumpasis
2007/10/30, I. Soumpasis [EMAIL PROTECTED]:



 2007/10/30, I. Soumpasis [EMAIL PROTECTED]:
 
  Hi all!
 
  2 more problems I found:
 
  1. The shortcuts for run selection, run all do not work. Moreover in
  both it says F9.
 
  2. I cannot close the tabs from the close button (which is a
  questionnaire)


 sorry a questionmark. I was doing some work with questionnaires yesterday.



One third thing is that this autocopmletion window in dataeditor is flashing
destructing the user and not letting him to write because the first thing
you write is not printed (it is like you hit a key for this window).

Kind Regards,
Ilias
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