[sage-release] Re: Sage 10.3.beta1 released

2023-12-13 Thread Emmanuel Charpentier


Forcing the reinstallation of cvxopt (sage -f cvxopt ; make -j8) allowed 
all the failed tests to pass without failure.

I still do not have any explanation for the initial cvxopt failure…

HTH,
​
Le mercredi 13 décembre 2023 à 18:43:27 UTC+1, Emmanuel Charpentier a 
écrit :

> Missing text of the previous message, (mysteriously missing...) :
>
> On Debian testing running on core i7 + 16 GB RAM, 
> upgrading 10.2.rc4 to 10.3.beta1 and running ptestlong gives a 
> non-negligible list of permanent failures :
>
>
> ```
> --
> sage -t --long --warn-long 210.3 
> --random-seed=243965959964229696435756084107657160315 
> src/sage/matrix/matrix2.pyx # 2 doctests failed sage -t --long --warn-long 
> 210.3 --random-seed=243965959964229696435756084107657160315 
> src/sage/numerical/sdp.pyx 
> # 34 doctests failed
> sage -t --long --warn-long 210.3 
> --random-seed=243965959964229696435756084107657160315 
> src/sage/numerical/backends/cvxopt_sdp_backend.pyx # 21 doctests failed 
> sage -t --long --warn-long 210.3 
> --random-seed=243965959964229696435756084107657160315 
> src/sage/numerical/backends/cvxopt_backend.pyx # 17 doctests failed
> sage -t --long --warn-long 210.3 
> --random-seed=243965959964229696435756084107657160315 
> src/sage/matrix/matrix_double_sparse.pyx # 9 doctests failed
> sage -t --long --warn-long 210.3 
> --random-seed=243965959964229696435756084107657160315 
> src/doc/en/thematic_tutorials/numerical_sage/cvxopt.rst # 2 doctests failed
> --
> ```
>
> All seem to be related to a missing cvxopt library (logs and config 
> enclosed).
>
> Any hint welcome !
> Le mercredi 13 décembre 2023 à 18:39:00 UTC+1, Emmanuel Charpentier a 
> écrit :
>
>>

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[sage-release] Re: Sage 10.3.beta1 released

2023-12-13 Thread Emmanuel Charpentier
Missing text of the previous message, (mysteriously missing...) :

On Debian testing running on core i7 + 16 GB RAM, 
upgrading 10.2.rc4 to 10.3.beta1 and running ptestlong gives a 
non-negligible list of permanent failures :


```
--
sage -t --long --warn-long 210.3 
--random-seed=243965959964229696435756084107657160315 
src/sage/matrix/matrix2.pyx # 2 doctests failed sage -t --long --warn-long 
210.3 --random-seed=243965959964229696435756084107657160315 
src/sage/numerical/sdp.pyx 
# 34 doctests failed
sage -t --long --warn-long 210.3 
--random-seed=243965959964229696435756084107657160315 
src/sage/numerical/backends/cvxopt_sdp_backend.pyx # 21 doctests failed 
sage -t --long --warn-long 210.3 
--random-seed=243965959964229696435756084107657160315 
src/sage/numerical/backends/cvxopt_backend.pyx # 17 doctests failed
sage -t --long --warn-long 210.3 
--random-seed=243965959964229696435756084107657160315 
src/sage/matrix/matrix_double_sparse.pyx # 9 doctests failed
sage -t --long --warn-long 210.3 
--random-seed=243965959964229696435756084107657160315 
src/doc/en/thematic_tutorials/numerical_sage/cvxopt.rst # 2 doctests failed
--
```

All seem to be related to a missing cvxopt library (logs and config 
enclosed).

Any hint welcome !
Le mercredi 13 décembre 2023 à 18:39:00 UTC+1, Emmanuel Charpentier a 
écrit :

>

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Re: [sage-release] Re: Sage 10.3.beta1 released

2023-12-12 Thread 'tsc...@ucdavis.edu' via sage-release
As indicated on the e-antic PR, this prevents normaliz from working. So 
this is blocking a number of optional packages, and it would be great if 
this could be resolved quickly.

Best,
Travis


On Wednesday, December 13, 2023 at 3:44:20 AM UTC+9 vdelecroix wrote:

> e-antic is indeed not compatible (yet) with flint-3.0.0, see
> https://github.com/flatsurf/e-antic/issues/263
>
> On Tue, 12 Dec 2023 at 08:32, 'tsc...@ucdavis.edu' via sage-release
>  wrote:
> >
> > I am having an issue building e_antic that was not present for building 
> 10.2 from source. I've included the log file below. I first tried without 
> installing anything extra and then with a system libantic installation. 
> Both resulted in the same log file.
> >
> > Best,
> > Travis
> >
> > Using cached file /home/travis/sage-build/upstream/e-antic-1.3.0.tar.gz
> > e_antic-1.3.0
> > 
> > Setting up build directory for e_antic-1.3.0
> > Finished extraction
> > No patch files found in ../patches
> > 
> > Host system:
> > Linux tscrim 6.2.0-37-generic #38~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Thu 
> Nov 2 18:01:13 UTC 2 x86_64 x86_64 x86_64 GNU/Linux
> > 
> > C compiler: gcc
> > C compiler version:
> > Using built-in specs.
> > COLLECT_GCC=gcc
> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper
> > OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
> > OFFLOAD_TARGET_DEFAULT=1
> > Target: x86_64-linux-gnu
> > Configured with: ../src/configure -v --with-pkgversion='Ubuntu 
> 11.4.0-1ubuntu1~22.04' 
> --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs 
> --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 
> --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 
> --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id 
> --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix 
> --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu 
> --enable-libstdcxx-debug --enable-libstdcxx-time=yes 
> --with-default-libstdcxx-abi=new --enable-gnu-unique-object 
> --disable-vtable-verify --enable-plugin --enable-default-pie 
> --with-system-zlib --enable-libphobos-checking=release 
> --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch 
> --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 
> --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic 
> --enable-offload-targets=nvptx-none=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-gcn/usr
>  
> --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu 
> --host=x86_64-linux-gnu --target=x86_64-linux-gnu 
> --with-build-config=bootstrap-lto-lean --enable-link-serialization=2
> > Thread model: posix
> > Supported LTO compression algorithms: zlib zstd
> > gcc version 11.4.0 (Ubuntu 11.4.0-1ubuntu1~22.04)
> > 
> > Package 'e_antic' is currently not installed
> > No legacy uninstaller found for 'e_antic'; nothing to do
> > Configuring e_antic-1.3.0
> > checking for a BSD-compatible install... /usr/bin/install -c
> > checking whether build environment is sane... yes
> > checking for a race-free mkdir -p... /usr/bin/mkdir -p
> > checking for gawk... gawk
> > checking whether make sets $(MAKE)... yes
> > checking whether make supports nested variables... yes
> > checking how to create a pax tar archive... gnutar
> > checking that generated files are newer than configure... done
> > configure: creating ./config.status
> > config.status: creating Makefile
> > === configuring in libeantic 
> (/home/travis/sage-build/local/var/tmp/sage/build/e_antic-1.3.0/src/libeantic)
> > configure: running /usr/bin/bash ./configure --disable-option-checking 
> '--prefix=/home/travis/sage-build/local' 
> '--libdir=/home/travis/sage-build/local/lib' '--disable-static' 
> '--disable-maintainer-mode' '--disable-dependency-tracking' 
> '--without-byexample' '--without-doc' '--without-benchmark' 
> '--without-pyeantic' --cache-file=/dev/null --srcdir=.
> > checking for a BSD-compatible install... /usr/bin/install -c
> > checking whether build environment is sane... yes
> > checking for a race-free mkdir -p... /usr/bin/mkdir -p
> > checking for gawk... gawk
> > checking whether make sets $(MAKE)... yes
> > checking whether make supports nested variables... yes
> > checking how to create a pax tar archive... gnutar
> > checking whether make supports nested variables... (cached) yes
> > checking build system type... x86_64-pc-linux-gnu
> > checking host system type... x86_64-pc-linux-gnu
> > checking how to print strings... printf
> > checking whether make supports the include directive... yes (GNU style)
> > checking for gcc... gcc
> > checking whether the C compiler works... yes
> > checking for C compiler default output 

Re: [sage-release] Re: Sage 10.3.beta1 released

2023-12-12 Thread Vincent Delecroix
e-antic is indeed not compatible (yet) with flint-3.0.0, see
https://github.com/flatsurf/e-antic/issues/263

On Tue, 12 Dec 2023 at 08:32, 'tsc...@ucdavis.edu' via sage-release
 wrote:
>
> I am having an issue building e_antic that was not present for building 10.2 
> from source. I've included the log file below. I first tried without 
> installing anything extra and then with a system libantic installation. Both 
> resulted in the same log file.
>
> Best,
> Travis
>
> Using cached file /home/travis/sage-build/upstream/e-antic-1.3.0.tar.gz
> e_antic-1.3.0
> 
> Setting up build directory for e_antic-1.3.0
> Finished extraction
> No patch files found in ../patches
> 
> Host system:
> Linux tscrim 6.2.0-37-generic #38~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Thu Nov  
> 2 18:01:13 UTC 2 x86_64 x86_64 x86_64 GNU/Linux
> 
> C compiler: gcc
> C compiler version:
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper
> OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
> OFFLOAD_TARGET_DEFAULT=1
> Target: x86_64-linux-gnu
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu 
> 11.4.0-1ubuntu1~22.04' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs 
> --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --prefix=/usr 
> --with-gcc-major-version-only --program-suffix=-11 
> --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id 
> --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix 
> --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu 
> --enable-libstdcxx-debug --enable-libstdcxx-time=yes 
> --with-default-libstdcxx-abi=new --enable-gnu-unique-object 
> --disable-vtable-verify --enable-plugin --enable-default-pie 
> --with-system-zlib --enable-libphobos-checking=release 
> --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch 
> --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 
> --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic 
> --enable-offload-targets=nvptx-none=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-gcn/usr
>  --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu 
> --host=x86_64-linux-gnu --target=x86_64-linux-gnu 
> --with-build-config=bootstrap-lto-lean --enable-link-serialization=2
> Thread model: posix
> Supported LTO compression algorithms: zlib zstd
> gcc version 11.4.0 (Ubuntu 11.4.0-1ubuntu1~22.04)
> 
> Package 'e_antic' is currently not installed
> No legacy uninstaller found for 'e_antic'; nothing to do
> Configuring e_antic-1.3.0
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a race-free mkdir -p... /usr/bin/mkdir -p
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking whether make supports nested variables... yes
> checking how to create a pax tar archive... gnutar
> checking that generated files are newer than configure... done
> configure: creating ./config.status
> config.status: creating Makefile
> === configuring in libeantic 
> (/home/travis/sage-build/local/var/tmp/sage/build/e_antic-1.3.0/src/libeantic)
> configure: running /usr/bin/bash ./configure --disable-option-checking 
> '--prefix=/home/travis/sage-build/local'  
> '--libdir=/home/travis/sage-build/local/lib' '--disable-static' 
> '--disable-maintainer-mode' '--disable-dependency-tracking' 
> '--without-byexample' '--without-doc' '--without-benchmark' 
> '--without-pyeantic' --cache-file=/dev/null --srcdir=.
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a race-free mkdir -p... /usr/bin/mkdir -p
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking whether make supports nested variables... yes
> checking how to create a pax tar archive... gnutar
> checking whether make supports nested variables... (cached) yes
> checking build system type... x86_64-pc-linux-gnu
> checking host system type... x86_64-pc-linux-gnu
> checking how to print strings... printf
> checking whether make supports the include directive... yes (GNU style)
> checking for gcc... gcc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether the compiler supports GNU C... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to enable C11 features... none needed
> checking whether gcc understands -c and -o together... yes
> checking dependency 

[sage-release] Re: Sage 10.3.beta1 released

2023-12-12 Thread Eric Gourgoulhon
Thanks for the release. 

On Ubuntu 22.04 running on Xeon E5-2623 + 16 GB RAM:
- parallel build (-j16) from a fresh git clone + pull develop, with system 
python (3.10.12): OK
- make ptestlong gave a single error:

sage -t --long --random-seed=676542016572831857751872562668780748 
src/sage/numerical/backends/logging_backend.py  # Killed due to abort

The test is passed when run standalone. 
The same error (maybe a race issue) has been reported previously for Sage 
9.6.beta2: 
https://groups.google.com/g/sage-release/c/vxYHQA6LUGw/m/0sfDdPnECAAJ
https://groups.google.com/g/sage-release/c/vxYHQA6LUGw/m/GXGFksByAQAJ

Eric. 

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[sage-release] Re: Sage 10.3.beta1 released

2023-12-12 Thread Antonio Rojas
e-antic doesn't support flint 3 yet

https://github.com/sagemath/sage/pull/35848#issuecomment-1841661819
https://github.com/flatsurf/e-antic/pull/264

El martes, 12 de diciembre de 2023 a las 8:32:16 UTC+1, tsc...@ucdavis.edu 
escribió:

I am having an issue building e_antic that was not present for building 
10.2 from source. I've included the log file below. I first tried without 
installing anything extra and then with a system libantic installation. 
Both resulted in the same log file.


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[sage-release] Re: Sage 10.3.beta1 released

2023-12-11 Thread 'tsc...@ucdavis.edu' via sage-release
I am having an issue building e_antic that was not present for building 
10.2 from source. I've included the log file below. I first tried without 
installing anything extra and then with a system libantic installation. 
Both resulted in the same log file.

Best,
Travis

Using cached file /home/travis/sage-build/upstream/e-antic-1.3.0.tar.gz
e_antic-1.3.0

Setting up build directory for e_antic-1.3.0
Finished extraction
No patch files found in ../patches

Host system:
Linux tscrim 6.2.0-37-generic #38~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Thu 
Nov  2 18:01:13 UTC 2 x86_64 x86_64 x86_64 GNU/Linux

C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 
11.4.0-1ubuntu1~22.04' 
--with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs 
--enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 
--prefix=/usr --with-gcc-major-version-only --program-suffix=-11 
--program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id 
--libexecdir=/usr/lib --without-included-gettext --enable-threads=posix 
--libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu 
--enable-libstdcxx-debug --enable-libstdcxx-time=yes 
--with-default-libstdcxx-abi=new --enable-gnu-unique-object 
--disable-vtable-verify --enable-plugin --enable-default-pie 
--with-system-zlib --enable-libphobos-checking=release 
--with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch 
--disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 
--with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic 
--enable-offload-targets=nvptx-none=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-gcn/usr
 
--without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu 
--host=x86_64-linux-gnu --target=x86_64-linux-gnu 
--with-build-config=bootstrap-lto-lean --enable-link-serialization=2
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 11.4.0 (Ubuntu 11.4.0-1ubuntu1~22.04) 

Package 'e_antic' is currently not installed
No legacy uninstaller found for 'e_antic'; nothing to do
Configuring e_antic-1.3.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking how to create a pax tar archive... gnutar
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
=== configuring in libeantic 
(/home/travis/sage-build/local/var/tmp/sage/build/e_antic-1.3.0/src/libeantic)
configure: running /usr/bin/bash ./configure --disable-option-checking 
'--prefix=/home/travis/sage-build/local' 
 '--libdir=/home/travis/sage-build/local/lib' '--disable-static' 
'--disable-maintainer-mode' '--disable-dependency-tracking' 
'--without-byexample' '--without-doc' '--without-benchmark' 
'--without-pyeantic' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking how to create a pax tar archive... gnutar
checking whether make supports nested variables... (cached) yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... ld
checking if the linker (ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... 

[sage-release] Re: Sage 10.3.beta1 released

2023-12-11 Thread Gonzalo Tornaría
See: https://github.com/sagemath/sage/pull/36859

Volker, it would be appreciated if you include this in beta2.

Is it possible that your merge script somehow takes priority into account, 
not just pr number?

Having a broken release is inconvenient for development.

Best,
Gonzalo

On Monday, December 11, 2023 at 12:59:38 PM UTC-3 Antonio Rojas wrote:

> On my distro, sagelib-only build, the new file 
> 'src/sage/libs/pari/convert_sage_matrix.pyx' is not being cythonized or 
> built. This causes major breakage, with many
>
> > ModuleNotFoundError: No module named 
> 'sage.libs.pari.convert_sage_matrix'
>
> errors. The first line of the file
>
> # sage_setup: distribution = sagemath-pari
>
> looks suspicious. Is 'sagemath-pari' actually a thing? I can't find any 
> other mention to it in the sage source.
>

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[sage-release] Re: Sage 10.3.beta1 released

2023-12-11 Thread Matthias Köppe
On Monday, December 11, 2023 at 7:59:38 AM UTC-8 Antonio Rojas wrote:

Is 'sagemath-pari' actually a thing? I can't find any other mention to it 
in the sage source.


Not yet. https://github.com/sagemath/sage/pull/35095 adds it.

 

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[sage-release] Re: Sage 10.3.beta1 released

2023-12-11 Thread Matthias Köppe
Fixed in https://github.com/sagemath/sage/pull/36859


On Monday, December 11, 2023 at 7:59:38 AM UTC-8 Antonio Rojas wrote:

> On my distro, sagelib-only build, the new file 
> 'src/sage/libs/pari/convert_sage_matrix.pyx' is not being cythonized or 
> built. This causes major breakage, with many
>
> > ModuleNotFoundError: No module named 
> 'sage.libs.pari.convert_sage_matrix'
>
> errors. The first line of the file
>
> # sage_setup: distribution = sagemath-pari
>
> looks suspicious. Is 'sagemath-pari' actually a thing? I can't find any 
> other mention to it in the sage source.
>

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[sage-release] Re: Sage 10.3.beta1 released

2023-12-11 Thread Antonio Rojas
On my distro, sagelib-only build, the new file 
'src/sage/libs/pari/convert_sage_matrix.pyx' is not being cythonized or 
built. This causes major breakage, with many

> ModuleNotFoundError: No module named 'sage.libs.pari.convert_sage_matrix'

errors. The first line of the file

# sage_setup: distribution = sagemath-pari

looks suspicious. Is 'sagemath-pari' actually a thing? I can't find any 
other mention to it in the sage source.

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