Re: [sage-support] log4j

2021-12-14 Thread Adil Hasan
Hello folks,

In case you are concerned that you may be impacted by the Java log4j bug, you 
can download this application which will check if a supplied url is vulnerable 
to the bug:

https://github.com/fullhunt/log4j-scan 


Hth adil

> On 14 Dec 2021, at 22:10, Angela Hicks  wrote:
> 
> Thanks, William!
> Best,
> Angela
> 
> On Tue, Dec 14, 2021 at 4:54 PM William Stein  > wrote:
> I think that Sage doesn’t make any use of the JVM or Java so Sage is not 
> vulnerable to the log4j exploit. 
> 
> On Tue, Dec 14, 2021 at 6:47 AM Angela Hicks  > wrote:
> Has anyone more knowledgeable than I (admittedly a low bar) about sage's 
> internals (admittedly a low bar) thought about whether sage uses any 
> libraries that make it vulnerable to the log4j vulnerability?
> -Angela
> 
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Re: [sage-support] Sage Crash Report

2017-02-24 Thread Adil Hasan
Hello Andreas,
it looks like your system doesn't have gfortran library 
installed (the error message at the bottom). 
hth
adil

On Fri, Feb 24, 2017 at 02:48:47PM +0100, Andreas Maurischat wrote:
> Sage Crash Report
> 
> -- 
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> ***
> 
> IPython post-mortem report
> 
> {'commit_hash': u'5c9c918',
>  'commit_source': 'installation',
>  'default_encoding': 'UTF-8',
>  'ipython_path': 
> '/usr/local/sage-7.5.1/local/lib/python2.7/site-packages/IPython',
>  'ipython_version': '5.1.0',
>  'os_name': 'posix',
>  'platform': 'Linux-4.4.0-64-generic-x86_64-with-debian-stretch-sid',
>  'sys_executable': '/usr/local/sage-7.5.1/local/bin/python',
>  'sys_platform': 'linux2',
>  'sys_version': '2.7.13 (default, Jan 16 2017, 03:50:51) \n[GCC 5.4.0 
> 20160609]'}
> 
> ***
> 
> 
> 
> ***
> 
> Crash traceback:
> 
> ---
> ---
> ImportError   Python 2.7.13: /usr/local/sage-7.5.1/local/bin/python
>Fri Feb 24 14:48:14 2017
> A problem occurred executing Python code.  Here is the sequence of function
> calls leading up to the error, with the most recent (innermost) call last.
> /usr/local/sage-7.5.1/src/bin/sage-ipython in ()
>   1 #!/usr/bin/env python
>   2 # -*- coding: utf-8 -*-
>   3 """
>   4 Sage IPython startup script.
>   5 """
>   6 
>   7 from sage.repl.interpreter import SageTerminalApp
>   8 
>   9 app = SageTerminalApp.instance()
> ---> 10 app.initialize()
> global app.initialize =  >
>  11 app.start()
> 
>  in initialize(self= object>, argv=None)
> 
> /usr/local/sage-7.5.1/local/lib/python2.7/site-packages/traitlets/config/application.pyc
>  in catch_config_error(method=, 
> app=, *args=(None,), 
> **kwargs={})
>  59 
>  60 
> #-
>  61 # Application class
>  62 
> #-
>  63 
>  64 @decorator
>  65 def catch_config_error(method, app, *args, **kwargs):
>  66 """Method decorator for catching invalid config 
> (Trait/ArgumentErrors) during init.
>  67 
>  68 On a TraitError (generally caused by bad config), this will print 
> the trait's
>  69 message, and exit the app.
>  70 
>  71 For use on init methods, to prevent invoking excepthook on 
> invalid input.
>  72 """
>  73 try:
> ---> 74 return method(app, *args, **kwargs)
> method = 
> app = 
> args = (None,)
> kwargs = {}
>  75 except (TraitError, ArgumentError) as e:
>  76 app.print_help()
>  77 app.log.fatal("Bad config encountered during initialization:")
>  78 app.log.fatal(str(e))
>  79 app.log.debug("Config at the time: %s", app.config)
>  80 app.exit(1)
>  81 
>  82 
>  83 class ApplicationError(Exception):
>  84 pass
>  85 
>  86 
>  87 class LevelFormatter(logging.Formatter):
>  88 """Formatter with additional `highlevel` record
>  89 
> 
> /usr/local/sage-7.5.1/local/lib/python2.7/site-packages/IPython/terminal/ipapp.pyc
>  in initialize(self=, argv=None)
> 294 
> 295 return super(TerminalIPythonApp, 
> self).parse_command_line(argv)
> 296 
> 297 @catch_config_error
> 298 def initialize(self, argv=None):
> 299 """Do actions after construct, but before starting the app."""
> 300 super(TerminalIPythonApp, self).initialize(argv)
> 301 if self.subapp is not None:
> 302 # don't bother initializing further, starting subapp
> 303 return
> 304 # print self.extra_args
> 305 if self.extra_args and not self.something_to_run:
> 306 self.file_to_run = self.extra_args[0]
> 307 self.init_path()
> 308 # create the shell
> --> 309 self.init_shell()
> self.init_shell =  >
> 310 # and draw the banner
> 311 self.init_banner()
> 312 # Now a variety of things that happen after the 

Re: [sage-support] Sage crash report

2016-12-21 Thread Adil Hasan
Hello Leonel,
the bottom of the report indicates your laptop is missing the fortran
libraries (libgfortran). I'm not sure how to go about finding those for
your distribution though.
hth
adil
 
On Wed, Dec 21, 2016 at 01:00:24PM -0600, leonel torres salinas wrote:
> Hello, i just wanted to try Sagemath in my computer
> 
> Toshiba satellite l745d runing Fedora 25 with LXDE desktop
> 
> I tried to execute it from the binaries but it wasn't enough for it
> 
> Thank you for the support, i really enjoy your work
> 
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> ***
> 
> IPython post-mortem report
> 
> {'commit_hash': u'1ba246d',
>  'commit_source': 'installation',
>  'default_encoding': 'UTF-8',
>  'ipython_path': 
> '/home/leonel/Descargas/SageMath/local/lib/python2.7/site-packages/IPython',
>  'ipython_version': '5.0.0',
>  'os_name': 'posix',
>  'platform': 'Linux-4.8.14-300.fc25.x86_64-x86_64-with-fedora-25-Twenty_Five',
>  'sys_executable': '/home/leonel/Descargas/SageMath/local/bin/python',
>  'sys_platform': 'linux2',
>  'sys_version': '2.7.10 (default, Oct 21 2016, 00:22:02) \n[GCC 6.2.1 
> 20160916 (Red Hat 6.2.1-2)]'}
> 
> ***
> 
> 
> 
> ***
> 
> Crash traceback:
> 
> ---
> ---
> ImportError Python 2.7.10: /home/leonel/Descargas/SageMath/local/bin/python
>Wed Dec 21 12:18:48 2016
> A problem occurred executing Python code.  Here is the sequence of function
> calls leading up to the error, with the most recent (innermost) call last.
> /home/leonel/Descargas/SageMath/src/bin/sage-ipython in ()
>   1 #!/usr/bin/env python
>   2 # -*- coding: utf-8 -*-
>   3 """
>   4 Sage IPython startup script.
>   5 """
>   6 
>   7 from sage.repl.interpreter import SageTerminalApp
>   8 
>   9 app = SageTerminalApp.instance()
> ---> 10 app.initialize()
> global app.initialize =  >
>  11 app.start()
> 
>  in initialize(self= object>, argv=None)
> 
> /home/leonel/Descargas/SageMath/local/lib/python2.7/site-packages/traitlets/config/application.py
>  in catch_config_error(method=, 
> app=, *args=(None,), 
> **kwargs={})
>  59 
>  60 
> #-
>  61 # Application class
>  62 
> #-
>  63 
>  64 @decorator
>  65 def catch_config_error(method, app, *args, **kwargs):
>  66 """Method decorator for catching invalid config 
> (Trait/ArgumentErrors) during init.
>  67 
>  68 On a TraitError (generally caused by bad config), this will print 
> the trait's
>  69 message, and exit the app.
>  70 
>  71 For use on init methods, to prevent invoking excepthook on 
> invalid input.
>  72 """
>  73 try:
> ---> 74 return method(app, *args, **kwargs)
> method = 
> app = 
> args = (None,)
> kwargs = {}
>  75 except (TraitError, ArgumentError) as e:
>  76 app.print_help()
>  77 app.log.fatal("Bad config encountered during initialization:")
>  78 app.log.fatal(str(e))
>  79 app.log.debug("Config at the time: %s", app.config)
>  80 app.exit(1)
>  81 
>  82 
>  83 class ApplicationError(Exception):
>  84 pass
>  85 
>  86 
>  87 class LevelFormatter(logging.Formatter):
>  88 """Formatter with additional `highlevel` record
>  89 
> 
> /home/leonel/Descargas/SageMath/local/lib/python2.7/site-packages/IPython/terminal/ipapp.py
>  in initialize(self=, argv=None)
> 294 
> 295 return super(TerminalIPythonApp, 
> self).parse_command_line(argv)
> 296 
> 297 @catch_config_error
> 298 def initialize(self, argv=None):
> 299 """Do actions after construct, but before starting the app."""
> 300 super(TerminalIPythonApp, self).initialize(argv)
> 301 if self.subapp is not None:
> 302 # don't bother initializing further, starting subapp
> 303 return
> 304 # print self.extra_args
> 305 if self.extra_args and 

Re: [sage-support] Re: Sage 6.10 paths not updated when relocating

2016-01-29 Thread Adil Hasan
Hello,
if you are using git I think you can do:
git tag
to get a list of the tags and then:
git checkout 6.10
which should put in the correct version.
hth
adil

On Fri, Jan 29, 2016 at 08:21:36AM -0800, mjs wrote:
> So the Sage installation documentation that says that moving the tree and 
> then running as root will fix everything is no longer correct? 
> 
> Is there a step-by-step direction for building Sage with binary-pkg?  I 
> tried downloading the binary-pkg zip file, but make complained that there 
> was no Git repository, so I cloned the binary-pkg Git repo and typed 'make 
> package-sage'. It appears to have built a tarball for sage-7.1 for my 
> platform, but I wanted 6.10. It's not immediately apparent how to specify 
> the version number.
> 
> Thanks.
> 
> 
> On Wednesday, January 27, 2016 at 2:53:48 PM UTC-5, Volker Braun wrote:
> >
> > Either compile Sage in place, or use 
> > https://github.com/sagemath/binary-pkg 
> > 
> >  
> > to build a special relocatable version.
> >
> >
> > On Wednesday, January 27, 2016 at 12:18:49 PM UTC-5, mjs wrote:
> >>
> >> It seems that at least some hard-coded paths are not repaired when  the 
> >> Sage directory tree is relocated.
> >>
> >> I built sage in my home directory, installed some optional packages, 
> >> moved the whole tree to /usr/local/sage-6.10 and ran sage as root. Sage 
> >> reported updating the hard-coded paths, but when I run the notebook server 
> >> and attempt to plot, I get an error:
> >>
> >> prime_list = [2,3,5,7,11]
> >>
> >> list_plot(prime_list)
> >> 
> >>
> >> /usr/local/sage-6.10/local/lib/python2.7/site-packages/sage/repl/rich_ou\
> >> tput/display_manager.py:570: RichReprWarning: Exception in _rich_repr_
> >> while displaying object: /home/mjs/src/sage-6.10/local/lib/libtatlas.so:
> >> cannot open shared object file: Permission denied
> >>   RichReprWarning,
> >> Graphics object consisting of 1 graphics primitive
> >>
> >>
> >> Is there a way to force the path rewrite or are there some paths that are 
> >> just missed incorrectly?
> >>
> >> TIA.
> >>
> >
> 
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Re: [sage-support] Plotting a q analogue function as a challenge?

2015-08-14 Thread Adil Hasan
Hello Saad,
I think that's a python error and is telling us that you have given too
many arguments to the function. I wonder if your brackets are OK. Just from
looking at what you post it looks as if there is a mismatch in the opening
and closing of brackets.
Hth
Adil

On Fri, 14 Aug 2015 15:57 saad khalid saad1...@gmail.com wrote:



 On Friday, August 14, 2015 at 1:13:53 AM UTC-5, jori.ma...@uta.fi wrote:

 On Thu, 13 Aug 2015, saad khalid wrote:

  I'm currently trying to get support from my professors in order for our
  school to move from Mathematica to Sage Math. One of them challenged me
  to - -

 What should we give as an exhange? Wasn't there some discussion about
 speed of gamma function on sage-devel, maybe a year ago? Or some graph
 theory question that is easy to do in Sage?

 --
 Jori Mäntysalo


 What exactly did you mean by exchange?

 Also, I'm running into an error with qgamma. I'm trying to run it with x =
 .5, and q ranging from 0 to .99. However, I am getting a too many values
 to unpack error. My code is this:
 plot(lambda x: qgamma(.5,x), (x, 0, .99))

 Does that mean that I don't have enough server space?

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[sage-support] Re: Sage 6.8 problem building on Linux Mint 17

2015-08-05 Thread Adil Hasan
Hello,
I found out the cause of my problem. I needed to upgrade my version of 
setuptools (I upgrade to version 18.1 which is the latest thanks to the 
clue here
https://github.com/gotcha/ipdb/issues/60). I think hit another problem with 
Cython missing some pxd files. I think this was due to my installing the 
ubuntu version of
Cython. I removed this and then the build went through to completion.
Just thought I should post this in case someone else hits a similar problem 
(and of course to avoid people spending time on debugging it).
hth
adil


On Tuesday, 4 August 2015 10:43:04 UTC+1, Adil Hasan wrote:

 Hello Volker, 
 sorry for some reason I didn't see the responses in my email client. Yes, 
 it's Linux mint 17 (ubuntu based system) and I have python 2.7.6 installed 
 system-wide. If you'd like me to test 6.9 I can try that.
 Apologies for the delayed response.
 adil

 On Monday, 3 August 2015 14:28:43 UTC+1, Dima Pasechnik wrote:



 On Monday, 3 August 2015 13:03:45 UTC+1, Volker Braun wrote:

 Which OS is that on?

 the subject line says Linux Mint 17 



 On Monday, August 3, 2015 at 12:47:48 PM UTC+2, Adil Hasan wrote:

 Hello,
 I downloaded the Sage source and tried to build it running the make 
 command. The build failed when trying to install Cython with the error 
 below.
 Has anyone seen this before?
 hope all is well,
 adil

 Compiling module Cython.Tempita._tempita ...
 running install
 Traceback (most recent call last):
   File setup.py, line 359, in module
 **setup_args
   File /home/hasan/sage-6.8/local/lib/python/distutils/core.py, line 
 151, in setup
 dist.run_commands()
   File /home/hasan/sage-6.8/local/lib/python/distutils/dist.py, line 
 953, in run_commands
 self.run_command(cmd)
   File /home/hasan/sage-6.8/local/lib/python/distutils/dist.py, line 
 972, in run_command
 cmd_obj.run()
   File 
 /usr/lib/python2.7/dist-packages/setuptools/command/install.py, line 73, 
 in run
 self.do_egg_install()
   File 
 /usr/lib/python2.7/dist-packages/setuptools/command/install.py, line 82, 
 in do_egg_install
 cmd.ensure_finalized()  # finalize before bdist_egg munges install 
 cmd
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 109, in ensure_finalized
 self.finalize_options()
   File 
 /usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py, 
 line 
 274, in finalize_options
 ('install_dir','install_dir')
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 298, in set_undefined_options
 src_cmd_obj.ensure_finalized()
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 109, in ensure_finalized
 self.finalize_options()
   File 
 /usr/lib/python2.7/dist-packages/setuptools/command/install_lib.py, line 
 13, in finalize_options
 
 self.set_undefined_options('install',('install_layout','install_layout'))
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 302, in set_undefined_options
 getattr(src_cmd_obj, src_option))
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 105, in __getattr__
 raise AttributeError, attr
 AttributeError: install_layout
 Error installing Cython



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[sage-support] Re: Sage 6.8 problem building on Linux Mint 17

2015-08-04 Thread Adil Hasan
Hello Volker, 
sorry for some reason I didn't see the responses in my email client. Yes, 
it's Linux mint 17 (ubuntu based system) and I have python 2.7.6 installed 
system-wide. If you'd like me to test 6.9 I can try that.
Apologies for the delayed response.
adil

On Monday, 3 August 2015 14:28:43 UTC+1, Dima Pasechnik wrote:



 On Monday, 3 August 2015 13:03:45 UTC+1, Volker Braun wrote:

 Which OS is that on?

 the subject line says Linux Mint 17 



 On Monday, August 3, 2015 at 12:47:48 PM UTC+2, Adil Hasan wrote:

 Hello,
 I downloaded the Sage source and tried to build it running the make 
 command. The build failed when trying to install Cython with the error 
 below.
 Has anyone seen this before?
 hope all is well,
 adil

 Compiling module Cython.Tempita._tempita ...
 running install
 Traceback (most recent call last):
   File setup.py, line 359, in module
 **setup_args
   File /home/hasan/sage-6.8/local/lib/python/distutils/core.py, line 
 151, in setup
 dist.run_commands()
   File /home/hasan/sage-6.8/local/lib/python/distutils/dist.py, line 
 953, in run_commands
 self.run_command(cmd)
   File /home/hasan/sage-6.8/local/lib/python/distutils/dist.py, line 
 972, in run_command
 cmd_obj.run()
   File /usr/lib/python2.7/dist-packages/setuptools/command/install.py, 
 line 73, in run
 self.do_egg_install()
   File /usr/lib/python2.7/dist-packages/setuptools/command/install.py, 
 line 82, in do_egg_install
 cmd.ensure_finalized()  # finalize before bdist_egg munges install 
 cmd
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 109, in ensure_finalized
 self.finalize_options()
   File 
 /usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py, line 
 274, in finalize_options
 ('install_dir','install_dir')
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 298, in set_undefined_options
 src_cmd_obj.ensure_finalized()
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 109, in ensure_finalized
 self.finalize_options()
   File 
 /usr/lib/python2.7/dist-packages/setuptools/command/install_lib.py, line 
 13, in finalize_options
 
 self.set_undefined_options('install',('install_layout','install_layout'))
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 302, in set_undefined_options
 getattr(src_cmd_obj, src_option))
   File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 
 105, in __getattr__
 raise AttributeError, attr
 AttributeError: install_layout
 Error installing Cython



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[sage-support] Sage 6.8 problem building on Linux Mint 17

2015-08-03 Thread Adil Hasan
Hello,
I downloaded the Sage source and tried to build it running the make 
command. The build failed when trying to install Cython with the error 
below.
Has anyone seen this before?
hope all is well,
adil

Compiling module Cython.Tempita._tempita ...
running install
Traceback (most recent call last):
  File setup.py, line 359, in module
**setup_args
  File /home/hasan/sage-6.8/local/lib/python/distutils/core.py, line 151, 
in setup
dist.run_commands()
  File /home/hasan/sage-6.8/local/lib/python/distutils/dist.py, line 953, 
in run_commands
self.run_command(cmd)
  File /home/hasan/sage-6.8/local/lib/python/distutils/dist.py, line 972, 
in run_command
cmd_obj.run()
  File /usr/lib/python2.7/dist-packages/setuptools/command/install.py, 
line 73, in run
self.do_egg_install()
  File /usr/lib/python2.7/dist-packages/setuptools/command/install.py, 
line 82, in do_egg_install
cmd.ensure_finalized()  # finalize before bdist_egg munges install cmd
  File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 109, 
in ensure_finalized
self.finalize_options()
  File 
/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py, line 
274, in finalize_options
('install_dir','install_dir')
  File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 298, 
in set_undefined_options
src_cmd_obj.ensure_finalized()
  File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 109, 
in ensure_finalized
self.finalize_options()
  File 
/usr/lib/python2.7/dist-packages/setuptools/command/install_lib.py, line 
13, in finalize_options

self.set_undefined_options('install',('install_layout','install_layout'))
  File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 302, 
in set_undefined_options
getattr(src_cmd_obj, src_option))
  File /home/hasan/sage-6.8/local/lib/python/distutils/cmd.py, line 105, 
in __getattr__
raise AttributeError, attr
AttributeError: install_layout
Error installing Cython

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