[sage-support] Re: Update R to the 2.9 release with milestone Sage 4.0
On May 7, 4:24 pm, Mike Hansen mhan...@gmail.com wrote: On Thu, May 7, 2009 at 4:15 PM, mabshoff michael.absh...@mathematik.uni-dortmund.de wrote: Thanks for dong this work so far. Did you ever figure out if libintl was now mandatory? Wasn't it libiconv? Yep, just checked and you are right. But I did not check if 2.9 mandated it. --Mike Cheers, Michael --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to sage-support-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-support] Re: Update R to the 2.9 release with milestone Sage 4.0
FYI: I upgraded R to 2.9.0 on a Fedora 10 system: Installation of the matrix package failed (incompatible library issues) I recompiled all of sage to use gfortran then, from a sage shell, ran CPPFLAGS=-I$SAGE_LOCAL/include; export CPPFLAGS LIBnn=lib; export LIBnn export FC=sage_fortran export F77=sage_fortran export SAGE_FORTRAN=/usr/bin/gfortran export SAGE_FORTRAN_LIB=/usr/lib/ CFLAGS=-I$SAGE_LOCAL/include -L$SAGE_LOCAL/lib/ $CFLAGS; export CFLAGS LDFLAGS=-L$SAGE_LOCAL/lib/ $LDFLAGS; export LDFLAGS ./configure --prefix=$SAGE_LOCAL --with-recommended-packages=yes -- enable-R-shlib --with-x=$XSUPPORT --with-readline=$SAGE_LOCAL --with- blas=-L$SAGE_LOCAL/lib -lf77blas -latlas --with-lapack=-L $SAGE_LOCAL/lib -llapack -lcblas $SUN_FLAGS make vignettes make make install -- cd rpy-1.0.3/ RHOMES=$SAGE_LOCAL/lib/R; export RHOMES python setup.py install -- From R, I then installed the packages I normally use without any further problems. -gerhard --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to sage-support-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-support] Re: Update R to the 2.9 release with milestone Sage 4.0
I had upgraded my own versions of sage to R 2.8.1 and rpy-1.0.3 quite a while ago. With some info on what is involved in 'how to make this happen', I am willing to help out. -gerhard --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to sage-support-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-support] Re: Update R to the 2.9 release with milestone Sage 4.0
On Sat, May 2, 2009 at 12:26 AM, Rolandb rola...@planet.nl wrote: Hi Ticket #3086 states Update R to the 2.7 release and split off rpy.spkg with milestone Sage 4.0. If possible, two requests: 1) Update R to the latest 2.9 release (now sage 3.4 uses R version 2.6.1 (2007-11-26)) 2) To use R one has to load various additional packages. For instance I use the following lines: import rpy pack=[abind, distr, distrEx, e1071, effects, foreign, grid, lattice, lmtest, MASS, mgcv, multcomp,Rcmdr] for p in pack: r.install_packages(p) As the policy of Sage is all inclusive, I suggest rpy includes the most common R packages. Thanks in advance! Is there any chance you could help with making the above happen? You might be the biggest user of R in Sage in the world. William --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to sage-support-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-support] Re: Update R to the 2.9 release with milestone Sage 4.0
Release 4.0 is soon. So I suggest we split the work. 1) Update R to the latest 2.9 release (ticket #3086) I have no development experiences, but I assume that updating is a straightforward activity (but maybe I'm wrong). 2) Loading common packages in advance. After release 4.0 we look how many users have the same needs. If its really worthwhile, we can consider to take the next step. Roland On 2 mei, 09:30, William Stein wst...@gmail.com wrote: On Sat, May 2, 2009 at 12:26 AM, Rolandb rola...@planet.nl wrote: Hi Ticket #3086 states Update R to the 2.7 release and split off rpy.spkg with milestone Sage 4.0. If possible, two requests: 1) Update R to the latest 2.9 release (now sage 3.4 uses R version 2.6.1 (2007-11-26)) 2) To use R one has to load various additional packages. For instance I use the following lines: import rpy pack=[abind, distr, distrEx, e1071, effects, foreign, grid, lattice, lmtest, MASS, mgcv, multcomp,Rcmdr] for p in pack: r.install_packages(p) As the policy of Sage is all inclusive, I suggest rpy includes the most common R packages. Thanks in advance! Is there any chance you could help with making the above happen? You might be the biggest user of R in Sage in the world. William --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to sage-support-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-support] Re: Update R to the 2.9 release with milestone Sage 4.0
On May 2, 3:27 pm, Rolandb rola...@planet.nl wrote: Release 4.0 is soon. So I suggest we split the work. 1) Update R to the latest 2.9 release (ticket #3086) I have no development experiences, but I assume that updating is a straightforward activity (but maybe I'm wrong). I doubt it will be straightforward - nothing ever is :). R has suggested in 2.6 that some time in the future libintl will be mandatory. If that is the case we will have problems. Cheers, Michael --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to sage-support-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
