Re: [Biofuel] Prions and junk science

2006-06-15 Thread Mike Weaver
Obviously you're not a republican.

-Sid *Wayne*

Mike Redler wrote:

Back off Weaver!

Some things really are impossible. I did some research and according to 
Wayne Manzanero, you're WAY off!

It's impossible to tell the sun to leave the sky
It's impossible to ask a baby not to cry
Can the ocean keep from rushing to the shore?

...it's just impossible!

-Redler


Mike Weaver wrote:
  

Nonsense.

You're not trying hard enough:

Alice laughed: There's no use trying, she said; one can't believe 
impossible things.
I daresay you haven't had much practice, said the Queen. When I was 
younger, I always did it for half an hour a day. Why, sometimes I've 
believed as many as six impossible things before breakfast.
/Alice in Wonderland.

-Weaver
  


[impossible snip]

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Re: [Biofuel] Prions and junk science

2006-06-14 Thread Chip Mefford

Just in case anyone cares (at all) I, and I know others
immediately tune out anything that has the phrase
'junk science' in it anywhere.

The phrase was useful for about 4 months, many many years
ago. It has long since lost any context.

It is a pejorative term, initially used to describe logical
fallacies masquerading as scientific explanations.

In this sense,
(from wikipedia)
Affirming the consequent
If someone is human (P), then she is mortal (Q).
Anna is mortal (Q).
Therefore Anna is human (P).
But in fact Anna can be a cat; very much a mortal, but not a human one.

This would be junk science.

The term 'junk science' was QUICKLY co-opted by the Fred Singer's
of the world (Heritage Institute) to dismiss stuff like a causality
between 'second hand smoke' and health problems.

Junk Science is a idealogical term, a heavily loaded one at that.

So, when attempting to put a point across, one may do well
to avoid using this phrase.

---

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Re: [Biofuel] Prions and junk science

2006-06-14 Thread Mike Weaver
Nonsense.

You're not trying hard enough:

Alice laughed: There's no use trying, she said; one can't believe 
impossible things.
I daresay you haven't had much practice, said the Queen. When I was 
younger, I always did it for half an hour a day. Why, sometimes I've 
believed as many as six impossible things before breakfast.
/Alice in Wonderland.

-Weaver
/
bob allen wrote:

Howdy Kirk, I must strongly disagree with just about everything in this 
article.

Kirk McLoren wrote:
  

http://nov55.com/prin.html
 
*Prions and Junk Science*

*Prion proteins lack genetic material for creating their own evolution.



right out of the gun this is silly.  Most if not all genetic diseases are 
 expressed via 
ineffective or missing proteins.  Sickle cell anemia and Tay-Sachs disease to 
name just two.  In 
fact I challenge anyone to name any inherited disease which doesn't involve 
protein.

  

When the genetic material is in the host, it's a genetic disease; but 
prion diseases are obviously not genetic diseases.*



  

*Ever hear of new variant CJD? There cannot be such a thing as a new 
variant for a genetic disease.




sure there can, all it takes in the a mutation of the DNA which codes for the 
protein involved in 
the disease



  Evolution cannot work against the source
  

of the DNA.*



huh?





  

*On This Page:*

* *Prions* http://nov55.com/prin.html#pri
* *Junk Science* http://nov55.com/prin.html#Jun 

*Point 1. *There is zero probability that two mutations will support 
each other in creating genetic diseases.



again this just isn't so.  there are numerous examples of diseases which 
require more than one gene.


  So there could not be any more
  

than one mutation in the whole field of Scrapies-like diseases—across 
species and all.



  actually there are several isoforms for the prion.



  

*Point 2. *Nature has had 600 million years to iron out the flaws in 
brain membrane proteins. It is not still killing people over it.




way not true, or don't you believe in any number of other inheritable diseases 
such as early onset 
Alzheimer's, et al.


  

*Point 3. *A protein that causes a similar protein to change does not 
cause the cells to produce more such proteins and destroy themselves 
doing so.



the author of this report simply does not understand how prion diseases work.  
The prion simply acts 
as a template to cause the misfolding of existing protein, which destroys the 
native protein function

  

*Point 4. *Proteins are not indestructible; they are among the most 
fragile biological molecules. Genetic material is much closer to 
indestructible, because it needs to maintain information without error.
*Point 5. *There is no method of dissemination for a prion disease 
except eating brains,



all it takes is exposure to the prion, yes, eating brains puts one at the 
highest risk, but it is 
not the only mechanism for exposure.


snip



  

(Americans do not pronounce i as e, except to glorify junk science.)




now there is a forceful argument.  :-  one of my favorites is the things that 
swim in the sea- 
ghoti


that's

  gh as pronounced in enough--  F

  o as in women-- I

ti as in action-- sh

ghoti




  

Prions are proteins which supposedly cause Mad Cow Disease and variants 
such as Scrapies. The claim that a protein can do the same thing as 
infectious agents is in conflict with all scientific principles 
involved.




no it's not, the mechanism is clear and reproducible.  the native conformation 
of the protein is in 
a thermodynamically less stable shape than the prion form.  All it takes is a 
catalyst to cause an 
exergonic reaction   from native conformation to prion conformation





   etc, etc, etc.



  



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Re: [Biofuel] Prions and junk science

2006-06-14 Thread Mike Redler
In the spirit of Godwin's law and considering the fact that Chip is the 
first (to my knowledge) to make this observation, maybe this phenomenon 
should be called Chip's Law.

:-)

-Redler

Chip Mefford wrote:
 Just in case anyone cares (at all) I, and I know others
 immediately tune out anything that has the phrase
 'junk science' in it anywhere.

 The phrase was useful for about 4 months, many many years
 ago. It has long since lost any context.

 It is a pejorative term, initially used to describe logical
 fallacies masquerading as scientific explanations.

 In this sense,
 (from wikipedia)
 Affirming the consequent
 If someone is human (P), then she is mortal (Q).
 Anna is mortal (Q).
 Therefore Anna is human (P).
 But in fact Anna can be a cat; very much a mortal, but not a human one.

 This would be junk science.

 The term 'junk science' was QUICKLY co-opted by the Fred Singer's
 of the world (Heritage Institute) to dismiss stuff like a causality
 between 'second hand smoke' and health problems.

 Junk Science is a idealogical term, a heavily loaded one at that.

 So, when attempting to put a point across, one may do well
 to avoid using this phrase.

   


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Re: [Biofuel] Prions and junk science

2006-06-14 Thread Hakan Falk

Chip,

What ever it is, most of it has a tendency to show up in my Eudora 
Junk Box. LOL

Hakan

At 20:01 14/06/2006, you wrote:

Just in case anyone cares (at all) I, and I know others
immediately tune out anything that has the phrase
'junk science' in it anywhere.

The phrase was useful for about 4 months, many many years
ago. It has long since lost any context.

It is a pejorative term, initially used to describe logical
fallacies masquerading as scientific explanations.

In this sense,
(from wikipedia)
Affirming the consequent
If someone is human (P), then she is mortal (Q).
Anna is mortal (Q).
Therefore Anna is human (P).
But in fact Anna can be a cat; very much a mortal, but not a human one.

This would be junk science.

The term 'junk science' was QUICKLY co-opted by the Fred Singer's
of the world (Heritage Institute) to dismiss stuff like a causality
between 'second hand smoke' and health problems.

Junk Science is a idealogical term, a heavily loaded one at that.

So, when attempting to put a point across, one may do well
to avoid using this phrase.



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Re: [Biofuel] Prions and junk science

2006-06-14 Thread Mike Redler
Back off Weaver!

Some things really are impossible. I did some research and according to 
Wayne Manzanero, you're WAY off!

It's impossible to tell the sun to leave the sky
It's impossible to ask a baby not to cry
Can the ocean keep from rushing to the shore?

...it's just impossible!

-Redler


Mike Weaver wrote:
 Nonsense.

 You're not trying hard enough:

 Alice laughed: There's no use trying, she said; one can't believe 
 impossible things.
 I daresay you haven't had much practice, said the Queen. When I was 
 younger, I always did it for half an hour a day. Why, sometimes I've 
 believed as many as six impossible things before breakfast.
 /Alice in Wonderland.

 -Weaver
   
[impossible snip]

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Re: [Biofuel] Prions and junk science

2006-06-14 Thread bob allen
Howdy Kirk, I must strongly disagree with just about everything in this article.

Kirk McLoren wrote:
 http://nov55.com/prin.html
  
 *Prions and Junk Science*
 
 *Prion proteins lack genetic material for creating their own evolution.

right out of the gun this is silly.  Most if not all genetic diseases are 
expressed via 
ineffective or missing proteins.  Sickle cell anemia and Tay-Sachs disease to 
name just two.  In 
fact I challenge anyone to name any inherited disease which doesn't involve 
protein.

 When the genetic material is in the host, it's a genetic disease; but 
 prion diseases are obviously not genetic diseases.*

 
 *Ever hear of new variant CJD? There cannot be such a thing as a new 
 variant for a genetic disease.


sure there can, all it takes in the a mutation of the DNA which codes for the 
protein involved in 
the disease



  Evolution cannot work against the source
 of the DNA.*

huh?





 
 *On This Page:*
 
 * *Prions* http://nov55.com/prin.html#pri
 * *Junk Science* http://nov55.com/prin.html#Jun 
 
 *Point 1. *There is zero probability that two mutations will support 
 each other in creating genetic diseases.

again this just isn't so.  there are numerous examples of diseases which 
require more than one gene.


  So there could not be any more
 than one mutation in the whole field of Scrapies-like diseases—across 
 species and all.

  actually there are several isoforms for the prion.



 *Point 2. *Nature has had 600 million years to iron out the flaws in 
 brain membrane proteins. It is not still killing people over it.


way not true, or don't you believe in any number of other inheritable diseases 
such as early onset 
Alzheimer's, et al.


 *Point 3. *A protein that causes a similar protein to change does not 
 cause the cells to produce more such proteins and destroy themselves 
 doing so.

the author of this report simply does not understand how prion diseases work.  
The prion simply acts 
as a template to cause the misfolding of existing protein, which destroys the 
native protein function

 *Point 4. *Proteins are not indestructible; they are among the most 
 fragile biological molecules. Genetic material is much closer to 
 indestructible, because it needs to maintain information without error.
 *Point 5. *There is no method of dissemination for a prion disease 
 except eating brains,

all it takes is exposure to the prion, yes, eating brains puts one at the 
highest risk, but it is 
not the only mechanism for exposure.


snip



 (Americans do not pronounce i as e, except to glorify junk science.)


now there is a forceful argument.  :-  one of my favorites is the things that 
swim in the sea- 
ghoti


that's

  gh as pronounced in enough--  F

  o as in women-- I

ti as in action-- sh

ghoti




 Prions are proteins which supposedly cause Mad Cow Disease and variants 
 such as Scrapies. The claim that a protein can do the same thing as 
 infectious agents is in conflict with all scientific principles 
 involved.


no it's not, the mechanism is clear and reproducible.  the native conformation 
of the protein is in 
a thermodynamically less stable shape than the prion form.  All it takes is a 
catalyst to cause an 
exergonic reaction   from native conformation to prion conformation





   etc, etc, etc.



-- 
Bob Allen
http://ozarker.org/bob

Science is what we have learned about how to keep
from fooling ourselves - Richard Feynman

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[Biofuel] Prions and junk science

2006-06-13 Thread Kirk McLoren
http://nov55.com/prin.html  Prions and Junk Science  Prion proteins lack genetic material for creating their own evolution. When the genetic material is in the host, it's a genetic disease; but prion diseases are obviously not genetic diseases.   Ever hear of "new variant CJD?" There cannot be such a thing as a new variant for a genetic disease. Evolution cannot work against the source of the DNA.On This Page: Prions  
 Junk Science Point 1. There is zero probability that two mutations will support each other in creating genetic diseases. So there could not be any more than one mutation in the whole field of Scrapies-like diseases—across species and all.   Point 2. Nature has had 600 million years to iron out the flaws in brain membrane proteins. It is not still killing people over it.   Point 3. A protein that causes a similar protein to change does not cause the cells to produce more such proteins and destroy themselves
 doing so.   Point 4. Proteins are not indestructible; they are among the most fragile biological molecules. Genetic material is much closer to indestructible, because it needs to maintain information without error.   Point 5. There is no method of dissemination for a prion disease except eating brains, but sheep and animals in the wild spread the disease and acquire it like any other disease, while they never eat brains. The reason why it matters—bottom of page  Here's the contradiction in the basic laws of genetics for prions. There has to be
 natural selection to create a significant disease. If natural selection picks out the most destructive proteins and promotes them, the problem is that the protein is limited by a primary structure which is coded by the host DNA. A particular primary structure cannot produce any number of different conformational alternatives for a protein. So the natural selection cannot be separated from the host DNA, and backwards evolution cannot act upon the host DNA making it more disease prone.Natural selection prevents genetic diseases from going beyond one mutation.A disease without genetic material (supposedly a prion protein) cannot have variants which change over time, and natural selection reduces genetic diseases over time preventing them from showing up in more than one species.   Without its own separate genetic material, a disease has to be a single, isolated and sporadic mutation in the host DNA. There cannot be any order,
 complexity, or evolution to such a genetic disease.   One reason for this biological principle is that the ratio of destructive mutations to constructive mutation is immense. The probability of two mutations aligning upon each other to enhance a genetic disease is functionally zero. It will never happen.   Another factor involved is that natural selection improves survivability of the host by reducing genetic diseases, not enhancing them.   The second mutation to worsen a genetic disease removes it from the gene pool through natural selection or survival of the fitest.And to believe the prion theory we are supposed to assume that the Scrapies-like diseases are genetic diseases, because they supposedly are not caused by a microbe.   In other words, every point of complexity in prions must result from complex corruption of the host DNA, while DNA never corrupts itself in complex ways.Prions.(Americans do not pronounce i as e, except to glorify junk science.)Prions are proteins which supposedly cause Mad Cow Disease and variants such as Scrapies. The claim that a protein can do the same thing as infectious agents is in conflict with all scientific principles involved. There are better theories. Spiroplasma appears to be the most likely cause of those diseases.   MadCowDiseasehastheappearanceofbeinggeneticallyengineered, since it lost its usual degree of species specificity. In other words, it jumped species from sheep to cattle and from cattle to humans. However, this property may have resulted from speeded up evolution due to recycling of carcasses as livestock feed.Scrapies is a disease that destroys the brains of sheep but does not normally affect humans. The causative agent was looked for but never found.   In 1957, a variant of Scrapies
 was found to affect some human cannibals in New Guinea. The persons who ate the brains of their ancestors acquired the disease; others did not. So the disease was apparently promoted by eating brains.The human form is now called Creutzfeld-Jacob Disease (CJD). The group of related diseases is called Transmissible Spongiform Encephalopathy (TSE). The Mad Cow form is called Bovine Spongiform Encephalopathy (BSE).   A few years ago, cattle in England acquired the BSE variant of the disease. The precipitating factor was assumed to be the feeding of dead livestock back to livestock.   Soon, a few humans started acquiring the disease presumably from eating the meat of diseased cows. At that point, all cattle in England were slaughtered to protect the humans. There was