Re: [topbraid-users] inferencing never stops

[PaulZH]

Thanks for this.

Paul

On Wednesday, April 4, 2018 at 12:53:16 PM UTC+2, Holger Knublauch wrote:
>
> Thanks for the file. I noticed that there is an interaction between the 
> inferences that are made in one iteration (to infer X rdfs:subClassOf 
> owl:Thing) and the option to remove redundant inferences - which they are.
>
> To work around this, just click "Complete Mode" in the Configure 
> Inferencing dialog.
>
> I have not yet had the time to figure out exactly why this happens in your 
> examples but not everywhere else, but I thought I'd give you some heads up.
>
> Holger
>
>
> On 4/04/2018 17:26, Paul Hermans wrote:
>
> Hi Holger,
>
> Indeed, good news. The kennedys.ttl file works here also.
>
> I made an example but since containing client's data being sent directly.
>
>
> Paul
>
>
>
> On Wednesday, April 4, 2018 at 12:38:39 AM UTC+2, Holger Knublauch wrote: 
>>
>> Hi Paul,
>>
>> I tried the same but cannot yet reproduce the problem. You stated it 
>> happens with all files that you have tried. Did you for example try 
>> kennedys.ttl (which works for me)? Can you send me an example that does not 
>> work?
>>
>> Holger
>>
>>
>> On 4/04/2018 0:55, Paul Hermans wrote:
>>
>> TopBraid Composer Standard Edition.
>> Version 5.5.1 on macOS 10.13.4 (17E199)
>>
>> I run Infererence with:
>> - OWL 2 RL profile (see screenshot)
>>
>> Using as configuration:
>> - asserted, inferred and system triples
>> - iterate
>> (see screenshot)
>>
>> Inferencing keeps running.
>> Screenrecording at http://mbx.cm/t/Cr7lq
>>
>> Is happening with all the files I tried.
>>
>>
>> Paul
>>
>>
>>
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[topbraid-users] Anyone using RDFa, Microdata and Atom/RSS import?

[PaulZH]

not over here.

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Re: [topbraid-users] Re: TopBraid 5.2 Public Beta Announcement

[PaulZH]

The pictures in 'Run and Configure Inference Engines'

On Thursday, September 15, 2016 at 8:40:52 AM UTC+2, Holger Knublauch wrote:
>
> We are discontinuing support for native Jena rules and Jena-based 
> inferencing from 5.2 onwards. SPIN can be used instead (for custom rules) 
> and OWLIM for standard RDFS/OWL inferencing.
>
> Which pages on the docs are still mentioning it - we need to take out 
> these references.
>
> Thanks
> Holger
>
>
> On 15/09/2016 16:29, PaulZH wrote:
>
> I see that the Jena is not available anymore in the list of inference 
> engines while still in the docs. Is this a temporary beta thing?
>
> On Tuesday, September 13, 2016 at 9:25:38 PM UTC+2, Pat Doyle wrote: 
>>
>> Dear Users,
>>
>> TopQuadrant is pleased to announce the Public Beta availability of 
>> TopBraid 5.2!
>>
>> TopBraid 5.2 marks the first release of TopBraid Enterprise Data 
>> Governance (EDG).  It also provides additional triple store options to SDB 
>> -- Apache Jena TDB and MarkLogic databases. Major functional enhancements 
>> in 5.2 for TopBraid EVN and TopBraid EDG include overall improved user 
>> experience, technology upgrades, enhancements to NeighborGram and new 
>> AutoClassifier enhancement features.  SHACL development has been updated to 
>> stay in sync with the W3C standard and is also available now in EDG and EVN.
>>
>> For details, please see the 5.2 Release Notes:
>> http://www.topquadrant.com/release-notes-topbraid-5-2/. (Please note the 
>> data migration procedure)
>>
>> Downloads:
>>
>> TopBraid Composer 5.2 Beta: 
>> *http://www.topquadrant.com/downloads/topbraid-composer-install/ 
>> <http://www.topquadrant.com/downloads/topbraid-composer-install/>*
>>
>> For all EVN or TBL customers who have not yet received a private 
>> invitation to participate in the 5.2 beta release and would like to 
>> participate please contact us at sup...@topquadrant.com 
>>
>>
>> *Note that product documentation including user guides is still being 
>> updated and in some areas may be out of sync with the newly released Beta 
>> changes.
>>
>>
>> As always, we appreciate your participation in our Beta test program and 
>> look forward to your feedback.  Please submit your input by September 27, 
>> 2016.
>>
>>
>> For questions, please do not hesitate to contact us:
>> http://www.topquadrant.com/company/contact/
>>  - TopBraid Suite Users forum: 
>> http://groups.google.com/group/topbraid-users 
>>  - Composer support:  compose...@topquadrant.com
>>  - TopBraid Server products support (valid TBL, EVN, RDM and TBI 
>> licenses): sup...@topquadrant.com, (Tel: +1 919-300-7945)
>>  - Sales: sa...@topquadrant.com
>>
>> Thank you,
>> The TopBraid Team
>>
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[topbraid-users] Re: TopBraid 5.2 Public Beta Announcement

[PaulZH]

I see that the Jena is not available anymore in the list of inference 
engines while still in the docs. Is this a temporary beta thing?

On Tuesday, September 13, 2016 at 9:25:38 PM UTC+2, Pat Doyle wrote:
>
> Dear Users,
>
> TopQuadrant is pleased to announce the Public Beta availability of 
> TopBraid 5.2!
>
> TopBraid 5.2 marks the first release of TopBraid Enterprise Data 
> Governance (EDG).  It also provides additional triple store options to SDB 
> -- Apache Jena TDB and MarkLogic databases. Major functional enhancements 
> in 5.2 for TopBraid EVN and TopBraid EDG include overall improved user 
> experience, technology upgrades, enhancements to NeighborGram and new 
> AutoClassifier enhancement features.  SHACL development has been updated to 
> stay in sync with the W3C standard and is also available now in EDG and EVN.
>
> For details, please see the 5.2 Release Notes:
> http://www.topquadrant.com/release-notes-topbraid-5-2/. (Please note the 
> data migration procedure)
>
> Downloads:
>
> TopBraid Composer 5.2 Beta: 
> *http://www.topquadrant.com/downloads/topbraid-composer-install/ 
> *
>
> For all EVN or TBL customers who have not yet received a private 
> invitation to participate in the 5.2 beta release and would like to 
> participate please contact us at sup...@topquadrant.com  
>
>
> *Note that product documentation including user guides is still being 
> updated and in some areas may be out of sync with the newly released Beta 
> changes.
>
>
> As always, we appreciate your participation in our Beta test program and 
> look forward to your feedback.  Please submit your input by September 27, 
> 2016.
>
>
> For questions, please do not hesitate to contact us:
> http://www.topquadrant.com/company/contact/
>  - TopBraid Suite Users forum: 
> http://groups.google.com/group/topbraid-users 
>  - Composer support:  compose...@topquadrant.com 
>  - TopBraid Server products support (valid TBL, EVN, RDM and TBI 
> licenses): sup...@topquadrant.com , (Tel: +1 919-300-7945)
>  - Sales: sa...@topquadrant.com 
>
> Thank you,
> The TopBraid Team
>

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Re: [topbraid-users] TBCSE hangs

[PaulZH]

@Holger Tried this several times yesterday, but today the import works even 
fluently.
So it must had to do something with unreliable network/server stuff.

@Irene and @Scott concerning OWL/XML, apologies accepted.

Leaving the forum now, as Holger suggested, with all respect.


On Tuesday, June 17, 2014 3:15:26 AM UTC+2, Scott Henninger wrote:

  I observe the same behavior in 4.4.1 using the procedure Irene 
 specifies.  It is the case that some of the imports are not available, and 
 the timeouts could make this appear to hang.

 Yes apologies for the false alarm on the OWL/XML files.  The file at 
 http://reference.data.gov.uk/def/intervals/ appears to work just find in 
 TBC.

 -- Scott

 On 6/16/2014, 5:57 PM, Irene Polikoff wrote:
  
  Interesting … because I was also able to open it successfully just now 
 by doing the following:

  

 · Right click in the Navigator, choose import, RDF file from the 
 web

 · Entered http://reference.data.gov.uk/def/intervals/

 · Entered file name with .rdf extension

 · This created a file for me

 · I then, successfully opened it

  

 I am using 4.5 pre-release version, but I don’t think this matters. Paul, 
 If you try the same steps, does it work for you?

  

 Previously, I went to the link using Firefox to look at the file and got 
 served a plan text file. Someone else went to the link with Chrome and got 
 RDF file. 

  

 I then copied it to the workspace, had to rename because the extension was 
 .dat and tried opening it. It hang. It is possible that TBC was trying and 
 failing to access imports. Although, I believe we time out when this is 
 taking too much time and TBC was hanging for several minutes for me.

  

 Sorry, about incorrect response about OWL/XML format. Very recently we had 
 several people independently reporting an issue with hanging on open and 
 they all were trying to open OWL/XML files. So, we jumped to an incorrect 
 conclusion too quickly.

  

 Regards,

  

 Irene

  
  
 *From:* topbrai...@googlegroups.com javascript: [
 mailto:top...@googlegroups.com javascript:] *On Behalf Of *Holger 
 Knublauch
 *Sent:* Monday, June 16, 2014 6:41 PM
 *To:* topbrai...@googlegroups.com javascript:
 *Subject:* Re: [topbraid-users] TBCSE hangs
  
  
  
 Paul,

 I went to that URL in Chrome and downloaded the RDF/XML, which I saved to 
 the workspace as intervals.rdf. This opens without problems for me. It does 
 try to load the owl:imports though, and a networking issue could explain 
 why it appears to hang if the network of one of the imports is down or 
 unreliable.

 Importing it from the Import from URL wizard in TBC also seems to work. 
 The other test to directly import the URL into another local graph also 
 seems to work for me.

 So I am sorry but I cannot reproduce an error here. Have you tried this 
 multiple times?

 Thanks,
 Holger


 On 6/17/2014 1:37, PaulZH wrote:
  
  Do not succeed opening

 http://reference.data.gov.uk/def/intervals/

  

 in TBCSE Version: 4.4.0 on Mac.

  

 System hangs.

  

 Parsing it outside TBC using jena seems to work.

  

  

 Paul 

  

  

  
  
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[topbraid-users] TBCSE hangs

[PaulZH]

Do not succeed opening

http://reference.data.gov.uk/def/intervals/

in TBCSE Version: 4.4.0 on Mac.

System hangs.

Parsing it outside TBC using jena seems to work.


Paul 



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Re: [topbraid-users] TBCSE hangs

[PaulZH]

Strange,

I get in the response header, content-type: application/rdf+xml.

When opening in Firefox it shows as XML.

And rdfparse http://reference.data.gov.uk/def/intervals/
gives n-triples back.

On Monday, June 16, 2014 5:41:41 PM UTC+2, Irene Polikoff wrote:

 If I follow this link, I get plan text, no RDF. 

  

 *From:* topbrai...@googlegroups.com javascript: [mailto:
 topbrai...@googlegroups.com javascript:] *On Behalf Of *PaulZH
 *Sent:* Monday, June 16, 2014 11:38 AM
 *To:* topbrai...@googlegroups.com javascript:
 *Subject:* [topbraid-users] TBCSE hangs

  

 Do not succeed opening

 http://reference.data.gov.uk/def/intervals/

 in TBCSE Version: 4.4.0 on Mac.

 System hangs.

 Parsing it outside TBC using jena seems to work.


 Paul 

  

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Re: [topbraid-users] TBCSE hangs

[PaulZH]

Not supported is not the same as hanging.


On Monday, June 16, 2014 6:21:20 PM UTC+2, Scott Henninger wrote:

  That's OWL/XML, which is not supported by TopBraid.  We'd suggesting 
 using one of the RDF standard serializations of Turtle, NT or RDF/XML.

 -- Scott

 On 6/16/2014, 11:14 AM, Mark Graham wrote:
  
 Checking this as well. Hangs on line 1693 if I import RDF file from the 
 site location. 
 If import and open file without a file extension - then it defaults to 
 notepad text. If then open in TQ RDF/XML document mode..TBC loops with 
 messages it cannot read URI. This loop is a known response if an OWL format 
 is detected in the file.

  
  
  Thanks,
 Mark


 Mark Graham
 TopQuadrant Support

 *PRODUCT SUPPORT:*

 sup...@topquadrant.com javascript:
 http://www.topquadrant.com/products/support.html


  

 On Mon, Jun 16, 2014 at 11:41 AM, Irene Polikoff ir...@topquadrant.com 
 javascript: wrote:

  If I follow this link, I get plan text, no RDF. 

  

 *From:* topbrai...@googlegroups.com javascript: [mailto:
 topbrai...@googlegroups.com javascript:] *On Behalf Of *PaulZH
 *Sent:* Monday, June 16, 2014 11:38 AM
 *To:* topbrai...@googlegroups.com javascript:
 *Subject:* [topbraid-users] TBCSE hangs
  
  
  
 Do not succeed opening

 http://reference.data.gov.uk/def/intervals/


 in TBCSE Version: 4.4.0 on Mac.

 System hangs.

 Parsing it outside TBC using jena seems to work.


 Paul 


  
  
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Re: [topbraid-users] TBCSE hangs

[PaulZH]

Thanks Marc,

But this is kafka, since I read in the file
owl:versionInfo 
rdf:datatype=http://www.w3.org/2001/XMLSchema#string;Created with 
TopBraid Composer/owl:versionInfo.


Paul

On Monday, June 16, 2014 7:13:03 PM UTC+2, Mark Graham wrote:

 Hi Paul,

 We have some improvement on this currently. A future release of TBC will 
 issue an initial guidance message to the user that the file is not a 
 supported format. In that way the user can know to not choose to load this 
 type of file.

 Thanks,
 Mark

 Thanks,
 Mark


 Mark Graham
 TopQuadrant Support

 *PRODUCT SUPPORT:*

 sup...@topquadrant.com javascript:
 http://www.topquadrant.com/products/support.html




 On Mon, Jun 16, 2014 at 1:04 PM, PaulZH pa...@proxml.be javascript: 
 wrote:

 Not supported is not the same as hanging.



 On Monday, June 16, 2014 6:21:20 PM UTC+2, Scott Henninger wrote:

  That's OWL/XML, which is not supported by TopBraid.  We'd suggesting 
 using one of the RDF standard serializations of Turtle, NT or RDF/XML.

 -- Scott

 On 6/16/2014, 11:14 AM, Mark Graham wrote:
  
 Checking this as well. Hangs on line 1693 if I import RDF file from the 
 site location. 
 If import and open file without a file extension - then it defaults to 
 notepad text. If then open in TQ RDF/XML document mode..TBC loops with 
 messages it cannot read URI. This loop is a known response if an OWL format 
 is detected in the file.

  
  
  Thanks,
 Mark


 Mark Graham
 TopQuadrant Support

 *PRODUCT SUPPORT:*

 sup...@topquadrant.com
 http://www.topquadrant.com/products/support.html


  

 On Mon, Jun 16, 2014 at 11:41 AM, Irene Polikoff ir...@topquadrant.com 
 wrote:

  If I follow this link, I get plan text, no RDF. 

  

 *From:* topbrai...@googlegroups.com [mailto:topbrai...@googlegroups.com] 
 *On Behalf Of *PaulZH

 *Sent:* Monday, June 16, 2014 11:38 AM
 *To:* topbrai...@googlegroups.com
 *Subject:* [topbraid-users] TBCSE hangs

   
  
 Do not succeed opening

 http://reference.data.gov.uk/def/intervals/


 in TBCSE Version: 4.4.0 on Mac.

 System hangs.

 Parsing it outside TBC using jena seems to work.


 Paul 


  
  
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Re: [topbraid-users] TBCSE hangs

[PaulZH]

Mark, apologies for the spelling mistake in your name.

The file opens in TBC version 3.5.x.
Although 3.5.x doesn't understand OWL/XML either.


Paul

On Monday, June 16, 2014 7:17:34 PM UTC+2, PaulZH wrote:

 Thanks Marc,

 But this is kafka, since I read in the file
 owl:versionInfo 
 rdf:datatype=http://www.w3.org/2001/XMLSchema#string;Created 
 with TopBraid Composer/owl:versionInfo.


 Paul

 On Monday, June 16, 2014 7:13:03 PM UTC+2, Mark Graham wrote:

 Hi Paul,

 We have some improvement on this currently. A future release of TBC will 
 issue an initial guidance message to the user that the file is not a 
 supported format. In that way the user can know to not choose to load this 
 type of file.

 Thanks,
 Mark

 Thanks,
 Mark


 Mark Graham
 TopQuadrant Support

 *PRODUCT SUPPORT:*

 sup...@topquadrant.com
 http://www.topquadrant.com/products/support.html




 On Mon, Jun 16, 2014 at 1:04 PM, PaulZH pa...@proxml.be wrote:

 Not supported is not the same as hanging.



 On Monday, June 16, 2014 6:21:20 PM UTC+2, Scott Henninger wrote:

  That's OWL/XML, which is not supported by TopBraid.  We'd suggesting 
 using one of the RDF standard serializations of Turtle, NT or RDF/XML.

 -- Scott

 On 6/16/2014, 11:14 AM, Mark Graham wrote:
  
 Checking this as well. Hangs on line 1693 if I import RDF file from the 
 site location. 
 If import and open file without a file extension - then it defaults to 
 notepad text. If then open in TQ RDF/XML document mode..TBC loops with 
 messages it cannot read URI. This loop is a known response if an OWL 
 format 
 is detected in the file.

  
  
  Thanks,
 Mark


 Mark Graham
 TopQuadrant Support

 *PRODUCT SUPPORT:*

 sup...@topquadrant.com
 http://www.topquadrant.com/products/support.html


  

 On Mon, Jun 16, 2014 at 11:41 AM, Irene Polikoff ir...@topquadrant.com
  wrote:

  If I follow this link, I get plan text, no RDF. 

  

 *From:* topbrai...@googlegroups.com [mailto:topbrai...@
 googlegroups.com] *On Behalf Of *PaulZH

 *Sent:* Monday, June 16, 2014 11:38 AM
 *To:* topbrai...@googlegroups.com
 *Subject:* [topbraid-users] TBCSE hangs

   
  
 Do not succeed opening

 http://reference.data.gov.uk/def/intervals/


 in TBCSE Version: 4.4.0 on Mac.

 System hangs.

 Parsing it outside TBC using jena seems to work.


 Paul 


  
  
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[topbraid-users] encoding

[PaulZH]

TBC Standard 4.4 on Mac

Using the Kennedys.ttl example.

Adding some accented characters to a label or name.

Doing a sparql query.

Saving the sparql query to text.

[subject]pv
kennedys:JosephKennedykennedys:childkennedys:RobertKennedy
kennedys:JosephKennedykennedys:firstNameJoseph???
kennedys:JosephKennedykennedys:professionkennedys:ambassador
kennedys:JosephKennedykennedys:almaMaterkennedys:Harvard

Accented characters lost.


Paul



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Re: [topbraid-users] encoding

[PaulZH]

Thanks Holger.


Clear; settings adapted.


Paul

On Wednesday, March 5, 2014 12:08:12 AM UTC+1, Holger Knublauch wrote:

 Hi Paul, 

 this feature uses the default encoding for new files as specified in 

  Preferences  General  Workspace  Text file encoding 

 Set this to UTF-8. Then save your file. To re-open it in the same 
 encoding in TBC, you may need to right-click on the file and set 

  Properties  Resource  Text file encoding 

 also to UTF-8. 

 Regards 
 Holger 


 On 3/4/2014 21:49, PaulZH wrote: 
  TBC Standard 4.4 on Mac 
  
  Using the Kennedys.ttl example. 
  
  Adding some accented characters to a label or name. 
  
  Doing a sparql query. 
  
  Saving the sparql query to text. 
  
  [subject]pv 
  kennedys:JosephKennedykennedys:child kennedys:RobertKennedy 
  kennedys:JosephKennedykennedys:firstNameJoseph??? 
  kennedys:JosephKennedykennedys:profession kennedys:ambassador 
  kennedys:JosephKennedykennedys:almaMaterkennedys:Harvard 
  
  Accented characters lost. 
  
  
  Paul 
  
  
  
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[topbraid-users] download Standard edition Mac 64-bits

[PaulZH]

Scott,

The download Standard Edition Mac 64-bits
Still not working.



Paul

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[topbraid-users] Re: Notice: TQ Release 4.4.0 now AVAILABLE

[PaulZH]

Get page not found
http://www.topquadrant.com/download/4.4.0/tbc-macosx.cocoa.x86_64-4.4.0.v20140227-1612R.zip

On Friday, February 28, 2014 8:16:35 PM UTC+1, ma...@topquadrant.com wrote:

 Dear Users,

 TopQuadrant is very pleased to announce the general availability release 
 of TopBraid Suite products, version 4.4.0. 
 This is a significant release with many new capabilities. To mention just 
 a few:
 · This Release includes version 1.0 of our new product, *TopBraid 
 Insight (TBI),* providing federated search across distributed data 
 sources.
 oFor more information on TBI see 
 http://www.topquadrant.com/products/topbraid-insight/ . You may also want 
 to look at our new tutorial on using and setting up TBI: 
 http://topquadrant.com/docs/tbi/tutorial/ .
 · *Teamworks Platform* is now officially released providing a 
 comprehensive set of capabilities for extending *TopBraid Enterprise 
 Vocabulary Net (EVN)*.
 oFor more information, see 
 http://www.topquadrant.com/technology/topbraid-platform-overview/ and, 
 with TBC-ME running,
 http://localhost:8083/tbl/swp?_viewClass=teamworkdoc:Index
 · Users of *TopBraid EVN’s* unlimited Viewer module can now not 
 only browse vocabularies, but also send comments to the vocabulary 
 governance team. To support this process, EVN now has a new ‘comments by 
 status’ report.
 · Security module has been revamped for a more seamless 
 integration with LDAP. LDAP groups are now supported.
 · TopBraid platform now offers Enterprise Service Bus (ESB) 
 integration through JMS support
 · This release introduces support for Tomcat 7, Eclipse Kepler 
 and Jena 2.11.1
 For complete information on the contents of the release see *Release 
 Notes* at http://www.topquadrant.com/release-notes-topbraid-4-4  

 Kind regards,
 The TopBraid Team


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Re: [topbraid-users] Re: Notice: TQ Release 4.4.0 now AVAILABLE

[PaulZH]

Scott,

It is the standard version, Mac OSX, 64-bit.

Maestro is downloading, but I downgraded to the standard version.

Paul

On Saturday, March 1, 2014 5:39:30 PM UTC+1, Scott Henninger wrote:

  Paul; I'm not able to reproduce this.  Can you try again and check local 
 settings if you can't get this (or other) TBC downloads?

 -- Scott

  On 3/1/2014, 5:08 AM, PaulZH wrote:
  
 Get page not found

 http://www.topquadrant.com/download/4.4.0/tbc-macosx.cocoa.x86_64-4.4.0.v20140227-1612R.zip

 On Friday, February 28, 2014 8:16:35 PM UTC+1, ma...@topquadrant.comwrote: 

   Dear Users,

  TopQuadrant is very pleased to announce the general availability 
 release of TopBraid Suite products, version 4.4.0. 
 This is a significant release with many new capabilities. To mention just 
 a few:
 · This Release includes version 1.0 of our new product, *TopBraid 
 Insight (TBI),* providing federated search across distributed data 
 sources.
 oFor more information on TBI see 
 http://www.topquadrant.com/products/topbraid-insight/ . You may also 
 want to look at our new tutorial on using and setting up TBI: 
 http://topquadrant.com/docs/tbi/tutorial/ .
 · *Teamworks Platform* is now officially released providing a 
 comprehensive set of capabilities for extending *TopBraid Enterprise 
 Vocabulary Net (EVN)*.
  oFor more information, see 
 http://www.topquadrant.com/technology/topbraid-platform-overview/ and, 
 with TBC-ME running,
 http://localhost:8083/tbl/swp?_viewClass=teamworkdoc:Index
· Users of *TopBraid EVN’s* unlimited Viewer module can now 
 not only browse vocabularies, but also send comments to the vocabulary 
 governance team. To support this process, EVN now has a new ‘comments by 
 status’ report.
 · Security module has been revamped for a more seamless 
 integration with LDAP. LDAP groups are now supported.
 · TopBraid platform now offers Enterprise Service Bus (ESB) 
 integration through JMS support
 · This release introduces support for Tomcat 7, Eclipse Kepler 
 and Jena 2.11.1
 For complete information on the contents of the release see *Release 
 Notes* at http://www.topquadrant.com/release-notes-topbraid-4-4  

  Kind regards,
 The TopBraid Team
   
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Re: [topbraid-users] Saving SPARQL query results to file

[PaulZH]

Hi Terry,

If you right click the TopBraid Composer icon and ask for 'show package 
contents' you will get the additional folder structure.

Also check if you have java 1.5 available on your system, before you change 
the settings.


Paul

On Tuesday, January 28, 2014 6:06:29 AM UTC+1, ChilliPeppers wrote:

 Holger, 

 What do you recommend as a solution? Still doing dozens of TBC restarts 
 every day.

 This explanation of the bug provides some recommendations for application 
 developers: https://bugs.eclipse.org/bugs/show_bug.cgi?id=420682. Does 
 4.4 provide any of the solutions mentioned?

 Paul,

 Thanks for your tip. Could you be a bit more explicit for us less 
 technically competent, modelling types. How exactly do I find and edit this 
 info.plist

 I could find:

  /Applications/tbcme4.3.1/TopBraid Composer 

 but not:

  /Applications/tbcme4.3.1/TopBraid Composer.app/Contents

 I searched for info.plist and found a long list of them, but they all 
 seem to belong to Microsoft Apps, none for TBC

 Thanks


 On 28 Jan 2014, at 3:11 pm, Holger Knublauch 
 hol...@topquadrant.comjavascript: 
 wrote:

  Thanks Paul. Here is more information, confirming that this is an 
 Eclipse bug with Java 7:


 http://stackoverflow.com/questions/17800369/swt-filedialog-does-not-work-correctly-on-mac-osx-with-oracle-java-7

 Holger


 On 1/22/2014 19:24, PaulZH wrote:
  
 Use file info.plist (/Applications/tbcme4.3.1/TopBraid 
 Composer.app/Contents)
 to point explicitly to Java version 1.5

 keyEclipse/key
 array
 string-vm/string
 
 string/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Commands/java/string
 string-keyring/string
 string~/.eclipse_keyring/string
 string-showlocation/string
 /array

 On Friday, January 17, 2014 2:56:38 AM UTC+1, Holger Knublauch wrote: 

  The Eclipse platform that TopBraid is built upon is known to have 
 low-level bugs with Mac OS, so I am afraid these issues may be really 
 difficult for us to fix. We may need to mark this combination of Mavericks 
 and Java 7 as currently unsupported until we have finished our migration to 
 Eclipse Kepler. The latter is almost complete and we have Kepler builds 
 here, but Kepler has other UI bugs that make us hesitant to publish it with 
 TopBraid 4.4.

 Holger


 On 1/17/2014 11:53, Terry Roach wrote:
  
 Hi Scott 

  Yes I have upgraded Java, I am on 1.7.0_45-b18

  The problem is very intermittent though. I can't replicate it myself at 
 the moment. Yesterday however I was doing a lot of xsd imports and must 
 have had to restart TBC about 25 times.

  Terry

   
  On 17 Jan 2014, at 12:24 pm, Scott Henninger shenn...@topquadrant.com 
 wrote:

  Terry, I have been using Mavericks (10.9.1) for some time now, but did 
 not opt to upgrade Java, hence I'm still running Java 1.6.

 As much as I've tried, I cannot reproduce your issue (and thanks for the 
 clear description).  So perhaps you are running Java 1.7?

 -- Scott

 On Thursday, January 16, 2014 6:59:13 AM UTC-5, ChilliPeppers wrote: 

  Hi Paul, 

  Yes this is the same problem that I am facing (on a Mac yes).

  It seems that any call to the Mac file system will work the first time 
 but won't open the Finder again on a second subsequent attempt.

  Holger I have reinstalled TBC but still same problem. 

  Coincidentally I did upgrade my Mac OS to 10.9.1 (Mavericks) this past 
 weekend. I wonder if this has anything to do with it?)

  Terry

  On 14 Jan 2014, at 9:44 pm, PaulZH pa...@proxml.be wrote:

  Hi Terry,

 I encounter the same behavior and reported it before (you are on Mac 
 right?).

 The same happens when you import a file from the file system. It will 
 work once, then you have to reboot.


 Paul

 On Tuesday, January 14, 2014 4:13:46 AM UTC+1, ChilliPeppers wrote: 


   Hi Holger

  I'm on Version: 4.3.1.v20131101-1317R
   
  Nothing in the error log.

  Terry

  
  On 14 Jan 2014, at 2:10 pm, Holger Knublauch hol...@topquadrant.com 
 wrote:

 Hi Terry,

 which TBC version are you using? Is there anything in the Error Log?

 (The issue sounds vaguely familiar so it may have been fixed in the 
 meantime).

 Thanks,
 Holger


 On 1/14/2014 13:04, ChilliPeppers wrote:

 Hi,

 Is it a bug or am I just not doing something correctly.

 When I run a SPARQL query in the Query Editor I can click the little 
 Floppy Disk icon and save my results to a file.

 If I do this (saving to txt) and then come back, edit the query and try 
 to save again, nothing saves. I don't get the dialogue to save the file, 
 just nothing.

 Restarting TBC is the only way I've found to run another query and save 
 the results.

 What am I doing wrong?

 Thanks


 Terry
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 To post

Re: [topbraid-users] Saving SPARQL query results to file

[PaulZH]

Use file info.plist (/Applications/tbcme4.3.1/TopBraid 
Composer.app/Contents)
to point explicitly to Java version 1.5

keyEclipse/key
array
string-vm/string

string/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Commands/java/string
string-keyring/string
string~/.eclipse_keyring/string
string-showlocation/string
/array

On Friday, January 17, 2014 2:56:38 AM UTC+1, Holger Knublauch wrote:

  The Eclipse platform that TopBraid is built upon is known to have 
 low-level bugs with Mac OS, so I am afraid these issues may be really 
 difficult for us to fix. We may need to mark this combination of Mavericks 
 and Java 7 as currently unsupported until we have finished our migration to 
 Eclipse Kepler. The latter is almost complete and we have Kepler builds 
 here, but Kepler has other UI bugs that make us hesitant to publish it with 
 TopBraid 4.4.

 Holger


 On 1/17/2014 11:53, Terry Roach wrote:
  
 Hi Scott 

  Yes I have upgraded Java, I am on 1.7.0_45-b18

  The problem is very intermittent though. I can't replicate it myself at 
 the moment. Yesterday however I was doing a lot of xsd imports and must 
 have had to restart TBC about 25 times.

  Terry

   
  On 17 Jan 2014, at 12:24 pm, Scott Henninger 
 shenn...@topquadrant.comjavascript: 
 wrote:

  Terry, I have been using Mavericks (10.9.1) for some time now, but did 
 not opt to upgrade Java, hence I'm still running Java 1.6.

 As much as I've tried, I cannot reproduce your issue (and thanks for the 
 clear description).  So perhaps you are running Java 1.7?

 -- Scott

 On Thursday, January 16, 2014 6:59:13 AM UTC-5, ChilliPeppers wrote: 

  Hi Paul, 

  Yes this is the same problem that I am facing (on a Mac yes).

  It seems that any call to the Mac file system will work the first time 
 but won't open the Finder again on a second subsequent attempt.

  Holger I have reinstalled TBC but still same problem. 

  Coincidentally I did upgrade my Mac OS to 10.9.1 (Mavericks) this past 
 weekend. I wonder if this has anything to do with it?)

  Terry

  On 14 Jan 2014, at 9:44 pm, PaulZH pa...@proxml.be wrote:

  Hi Terry,

 I encounter the same behavior and reported it before (you are on Mac 
 right?).

 The same happens when you import a file from the file system. It will 
 work once, then you have to reboot.


 Paul

 On Tuesday, January 14, 2014 4:13:46 AM UTC+1, ChilliPeppers wrote: 


   Hi Holger

  I'm on Version: 4.3.1.v20131101-1317R
   
  Nothing in the error log.

  Terry

  
  On 14 Jan 2014, at 2:10 pm, Holger Knublauch hol...@topquadrant.com 
 wrote:

 Hi Terry,

 which TBC version are you using? Is there anything in the Error Log?

 (The issue sounds vaguely familiar so it may have been fixed in the 
 meantime).

 Thanks,
 Holger


 On 1/14/2014 13:04, ChilliPeppers wrote:

 Hi,

 Is it a bug or am I just not doing something correctly.

 When I run a SPARQL query in the Query Editor I can click the little 
 Floppy Disk icon and save my results to a file.

 If I do this (saving to txt) and then come back, edit the query and try 
 to save again, nothing saves. I don't get the dialogue to save the file, 
 just nothing.

 Restarting TBC is the only way I've found to run another query and save 
 the results.

 What am I doing wrong?

 Thanks


 Terry
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[topbraid-users] editing issue

[PaulZH]

Hi,

I'm using following property from http://d-nb.info/standards/elementset/gnd#

gnd:dateOfBirth
  a   owl:DatatypeProperty ;
  rdfs:domain gnd:DifferentiatedPerson ;
  rdfs:label Date of birth@en , Geburtsdatum@de ;
  rdfs:range
  [ a   owl:Class ;
owl:unionOf (rdfs:Literal xsd:dateTime)
  ] ;
  rdfs:subPropertyOf gnd:associatedDate ;
  gnd:marc21equivalent
  548 $a $9=4:datl , 548 $a $9=4:datx ;
  owl:equivalentProperty
  foaf:birthday , http://rdvocab.info/ElementsGr2/dateOfBirth 
.

In the form interface, I do not get the possibility to edit a dateTime.
The widget expects a URI.

When I move to source view and do the editing there, I get when I click 
'apply', following error:

Could not apply changes:
Input length = 1

According to me this has to do with some accented characters in the source. 
An issue previously reported.

Paul


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Re: [topbraid-users] save button in sparql result pane

[PaulZH]

Holger,

No, nothing appears in the error log.


Paul

On Friday, November 29, 2013 11:45:39 PM UTC+1, Holger Knublauch wrote:

 Paul, 

 is there anything in the error log? I don't have this Mac version to 
 reproduce the issue.

 Thanks,
 Holger


 On Nov 29, 2013, at 10:40 PM, PaulZH wrote:

 Hi,

 context: TBCME 4.3.1.v20131101-1317R on Mac Mavericks

 about: save button in sparql result pane
 I can use this 'save' only once.
 If I want to save a result again in another file format, I do not get the 
 window anymore where I can indicate the file name, extension and the place 
 where to save.
 I need to restart TBC for getting this save window back.


 Paul

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[topbraid-users] save button in sparql result pane

[PaulZH]

Hi,

context: TBCME 4.3.1.v20131101-1317R on Mac Mavericks

about: save button in sparql result pane
I can use this 'save' only once.
If I want to save a result again in another file format, I do not get the 
window anymore where I can indicate the file name, extension and the place 
where to save.
I need to restart TBC for getting this save window back.


Paul

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Re: [topbraid-users] UTF-8

[PaulZH]

Holger,

Many thanks.


Paul

On Monday, October 14, 2013 12:59:03 AM UTC+2, Holger Knublauch wrote:

  Paul,

 we have recorded this as an enhancement request.

 Thanks,
 Holger


 On 10/12/2013 22:53, PaulZH wrote:
  
 Scott,

 My Eclipse Workspace setting for text file encoding is UTF-8.
 So I'm not satisfied with the answer, surely since the client doesn't want 
 to buy the Maestro Edition, which is needed for SPARQLMotion.

 Paul



 On Friday, October 11, 2013 7:29:04 PM UTC+2, Scott Henninger wrote: 

  Paul; As you state, it may be best to do this in a SPARQLMotion query.� 
 You might check the preferences to see if Eclipse has setting for theoutput 
 of that file.

 -- Scott

  On 10/11/2013 1:20 AM, PaulZH wrote:
  
 Version: 4.3.0.v20130810-0843R

 View: SPARQL Query
 Doing a SPARQL query
 In the result pane take
 Drop-down menu item: Save results to file
 Take as extension: .txt

 Result attached
 encoding of the file seems to be mac roman

 how do set this to UTF-8? 

 I know I can set the encoding doing the same with SPARQLMotion, but I 
 want to do it directly from within the IDE.


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[topbraid-users] reasoner issues in TBC 4.3

[PaulZH]

Version: 4.3.0.v20130810-0843R on Mac

With setting TOPSPIN and iterate until 

java.lang.reflect.InvocationTargetException
at 
org.topbraidcomposer.inference.change.InferenceChange.run(InferenceChange.java:106)
at 
org.topbraidcomposer.inference.change.InferenceChange.execute(InferenceChange.java:58)
at 
org.topbraid.core.change.ChangeOperation.execute(ChangeOperation.java:105)
at 
org.eclipse.core.commands.operations.DefaultOperationHistory.execute(DefaultOperationHistory.java:513)
at 
org.topbraid.core.change.AbstractChangeEngine.execute(AbstractChangeEngine.java:272)
at 
org.topbraidcomposer.core.change.TBCChangeEngine.access$0(TBCChangeEngine.java:1)
at 
org.topbraidcomposer.core.change.TBCChangeEngine$2.run(TBCChangeEngine.java:163)
at 
org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:121)
Caused by: org.topbraid.javax.locks.InterruptedLockException: 
java.lang.InterruptedException
at org.topbraid.javax.locks.LockUtil.takeLocks(LockUtil.java:645)
at org.topbraid.javax.locks.LockUtil.innerLockBody(LockUtil.java:509)
at org.topbraid.javax.locks.LockUtil.innerLock(LockUtil.java:495)
at org.topbraid.javax.locks.LockUtil.lock(LockUtil.java:101)
at 
org.topbraid.javax.locks.JavaLockAdaptor.lock(JavaLockAdaptor.java:18)
at 
org.topbraid.core.graph.concurrent.LockingStrategy.beforeRead(LockingStrategy.java:52)
at 
org.topbraid.core.graph.concurrent.ThreadSafeGraph.beforeRead(ThreadSafeGraph.java:395)
at 
org.topbraid.core.graph.concurrent.ThreadSafeGraph.contains(ThreadSafeGraph.java:321)
at 
com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseContains(MultiUnion.java:143)
at com.hp.hpl.jena.graph.impl.GraphBase.contains(GraphBase.java:299)
at com.hp.hpl.jena.rdf.model.impl.ModelCom.contains(ModelCom.java:1155)
at 
org.topbraid.spin.inference.SPINInferences.runCommandOnClass(SPINInferences.java:320)
at 
org.topbraid.spin.inference.SPINInferences.run(SPINInferences.java:240)
at 
org.topbraid.spin.sparqlmotion.modules.impl.ApplyTopSPINModule.addNewTriples(ApplyTopSPINModule.java:122)
at 
org.topbraid.spintb.inference.SPINInferenceEngine.addTriples(SPINInferenceEngine.java:82)
at 
org.topbraid.inference.change.AbstractInferenceChange.runReallyNow(AbstractInferenceChange.java:157)
at 
org.topbraid.inference.change.AbstractInferenceChange.runReally(AbstractInferenceChange.java:124)
at 
org.topbraidcomposer.inference.change.InferenceChange.access$0(InferenceChange.java:1)
at 
org.topbraidcomposer.inference.change.InferenceChange$3.run(InferenceChange.java:90)
at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.InterruptedException
at 
java.util.concurrent.locks.AbstractQueuedSynchronizer.tryAcquireSharedNanos(AbstractQueuedSynchronizer.java:1302)
at 
java.util.concurrent.locks.ReentrantReadWriteLock$ReadLock.tryLock(ReentrantReadWriteLock.java:735)
at 
org.topbraid.javax.locks.JavaLockAdaptor.originalTryLock(JavaLockAdaptor.java:70)
at 
org.topbraid.javax.locks.LockUtil.saferLockInterruptibly(LockUtil.java:676)
at org.topbraid.javax.locks.LockUtil.takeLockCore(LockUtil.java:659)
at org.topbraid.javax.locks.LockUtil.takeLocks(LockUtil.java:636)
... 19 more
Root exception:
org.topbraid.javax.locks.InterruptedLockException: 
java.lang.InterruptedException
at org.topbraid.javax.locks.LockUtil.takeLocks(LockUtil.java:645)
at org.topbraid.javax.locks.LockUtil.innerLockBody(LockUtil.java:509)
at org.topbraid.javax.locks.LockUtil.innerLock(LockUtil.java:495)
at org.topbraid.javax.locks.LockUtil.lock(LockUtil.java:101)
at 
org.topbraid.javax.locks.JavaLockAdaptor.lock(JavaLockAdaptor.java:18)
at 
org.topbraid.core.graph.concurrent.LockingStrategy.beforeRead(LockingStrategy.java:52)
at 
org.topbraid.core.graph.concurrent.ThreadSafeGraph.beforeRead(ThreadSafeGraph.java:395)
at 
org.topbraid.core.graph.concurrent.ThreadSafeGraph.contains(ThreadSafeGraph.java:321)
at 
com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseContains(MultiUnion.java:143)
at com.hp.hpl.jena.graph.impl.GraphBase.contains(GraphBase.java:299)
at com.hp.hpl.jena.rdf.model.impl.ModelCom.contains(ModelCom.java:1155)
at 
org.topbraid.spin.inference.SPINInferences.runCommandOnClass(SPINInferences.java:320)
at 
org.topbraid.spin.inference.SPINInferences.run(SPINInferences.java:240)
at 
org.topbraid.spin.sparqlmotion.modules.impl.ApplyTopSPINModule.addNewTriples(ApplyTopSPINModule.java:122)
at 
org.topbraid.spintb.inference.SPINInferenceEngine.addTriples(SPINInferenceEngine.java:82)
at 
org.topbraid.inference.change.AbstractInferenceChange.runReallyNow(AbstractInferenceChange.java:157)
at 
org.topbraid.inference.change.AbstractInferenceChange.runReally(AbstractInferenceChange.java:124)
at 
org.topbraidcomposer.inference.change.InferenceChange.access$0(InferenceChange.java:1)
at 

Re: [topbraid-users] property graph using graph identifier

[PaulZH]

Scott,

It was not about the format.
TrIG was just used to show how the (mis)use of the 4th slot (graph id) 
could mimic the property graph modeling of graph databases such as neo4J, 
which are BTW taking the market much more and easier than the semweb stack.
So if we want to be competitive we need to be creative.

Concerning standards compliance, SPIN is no standard either :-), but anyhow 
very useful.

My 5 cents.


Paul

On Wednesday, September 4, 2013 12:42:16 AM UTC+2, Scott Henninger wrote:

  Yes, TriG will appear in RDF 1.1, which is currently in working draft 
 form (i.e. premature, as the syntax may change).  See 
 http://www.w3.org/TR/2013/WD-trig-20130409/

 -- Scott

  On 9/2/2013 4:51 AM, PaulZH wrote:
  
 Hi Scott and Kevin,

 Thanks for all this input.
 I do some more research as you suggested.

 BTW. This is a snippet in TriG of what the way of thinking was.

 @prefix  : htt://test.be/e/.
 @prefix  xsd: 
 http://www.w3.org/2001/XMLSchema#http://www.w3.org/2001/XMLSchema#.
 :g1 {:a1  :pays  :a2.}
 :g2 {:a2  :pays  :a3.}
 :g3 {:a3  :pays  :a4.}
 :g4 {:a4  :pays  :a1.}
 {:g1   :time  2013-12-12T09:00:00^^xsd:dateTime .
 :g1   :location 
 http://dbpedia.org/resource/Keerbergenhttp://dbpedia.org/resource/Keerbergen.
 :g1   :amount 5600 .}
 {:g2   :time  2013-08-08T09:00:00^^xsd:dateTime .
 :g2   :location 
 http://dbpedia.org/resource/Mechelenhttp://dbpedia.org/resource/Mechelen.
 :g2   :amount 2400 .}
 {:g3   :time  2013-06-06T09:00:00^^xsd:dateTime .
 :g3   :location 
 http://dbpedia.org/resource/Aarschothttp://dbpedia.org/resource/Aarschot.
 :g3   :amount  1200 .}
 {:g4   :time  2013-04-04T09:00:00^^xsd:dateTime .
 :g4   :location 
 http://dbpedia.org/resource/Aarschothttp://dbpedia.org/resource/Aarschot.
 :g4   :amount  12000 .}

  


 On Saturday, August 31, 2013 7:15:23 PM UTC+2, Scott Henninger wrote: 

  Kevin;  This is a good reference and outline an approach I did not talk 
 about earlier,  which is to use properties instead of statement 
 reification (caveat: some like to talk about multiple type of 
 reification, though I tend to use it for statement reification only).

 So I would second your recommendation to look at the PROV Ontology.

 The computational approaches are different in this case.  PROV assumes a 
 reasoner is being used and I was assuming manipulation of the RDF 
 triples.  Many ways to work at this (all of which are beyond the scopeof 
 this forum) and the key is probably to choose one that fits your needs 
 best and is computationally feasible.  Your miles will vary...

 --Scott

  On 8/31/2013 11:51 AM, Kevin Tyson wrote:
  
 The W3C Provenance ontology does a very good job of associating time with 
 properties that represent causal relationships by employing the 
 qualified relations pattern.  
 http://www.w3.org/TR/prov-o/
 This allows the ordering information to be considered during inference 
 which I don't think would work with reification. 

  
  
 On Saturday, August 31, 2013, Scott Henninger wrote:

  Paul; No, that's not the implication. Currently you need a file for 
 each graph (RDF 1.1 will likely change this).

  So the quad structure you refer to is already there. All triples live 
 within a graph, and graphs are named - with a URI, the base URI for 
 TopBraid - and can be accessed through SPARQL GRAPH.

  To add a fifth dimension to the triple for time would not be a 
 standards-based solution and therefore of marginal interest to vendors, 
 such as TopQuadrant.

  Not sure why reification is ruled out - you can always represent the 
 triple metadata, such as time, in reification in the back-end and generate 
 the non-reified triples in memory when needed. I.e. given an epoch of time 
 that needs to be queried (displayed, etc.), compute the triples for the 
 epoch using the reified metadata. It's fairly simple to do computationally, 
 and is essentially what EVN does with Working Copies.  Generally speaking, 
 reification is not such a bad solution.

  Named Graphs could be manipulated in a similar way for time, but I'm 
 sketchier on the details. One thought is to represent the timed data in a 
 graph, one per epoch. Then import the desired epoch graph into the rest of 
 the data.

  Beyond those sketchy details, this is an active area for a number of 
 standards bodies, and I'd suggest looking into some of those approaches.

 -- Scott 

  
   
 On Aug 31, 2013, at 9:12 AM, PaulZH p...@proxml.be wrote:

   Scott,

 Do I understand this well that for every triple that gets a (graph) id 
 which can then be used to attach time related data on it, needs to have its 
 own file?
 We are ending up with zillions of files then.


 Paul



 On Friday, August 30, 2013 4:56:17 PM UTC+2, Scott Henninger wrote: 

  Paul; TopBraid does use a named graph architecture.  Each file, be 
 they a text serialization or a back-end connector, contains a graph 
 identifier using the base URI.

 So you may be able to manipulate this though multiple files and import 
 them

Re: [topbraid-users] property graph using graph identifier

[PaulZH]

Hi Scott and Kevin,

Thanks for all this input.
I do some more research as you suggested.

BTW. This is a snippet in TriG of what the way of thinking was.

@prefix  : htt://test.be/e/.
 @prefix  xsd: http://www.w3.org/2001/XMLSchema# .
 :g1 {:a1  :pays  :a2.}
 :g2 {:a2  :pays  :a3.}
 :g3 {:a3  :pays  :a4.}
 :g4 {:a4  :pays  :a1.}
 {:g1   :time  2013-12-12T09:00:00^^xsd:dateTime .
 :g1   :location http://dbpedia.org/resource/Keerbergen .
 :g1   :amount 5600 .}
 {:g2   :time  2013-08-08T09:00:00^^xsd:dateTime .
 :g2   :location http://dbpedia.org/resource/Mechelen .
 :g2   :amount 2400 .}
 {:g3   :time  2013-06-06T09:00:00^^xsd:dateTime .
 :g3   :location http://dbpedia.org/resource/Aarschot .
 :g3   :amount  1200 .}
 {:g4   :time  2013-04-04T09:00:00^^xsd:dateTime .
 :g4   :location http://dbpedia.org/resource/Aarschot .
 :g4   :amount  12000 .}




On Saturday, August 31, 2013 7:15:23 PM UTC+2, Scott Henninger wrote:

  Kevin;  This is a good reference and outline an approach I did not talk 
 about earlier,  which is to use properties instead of statement 
 reification (caveat: some like to talk about multiple type of 
 reification, though I tend to use it for statement reification only).

 So I would second your recommendation to look at the PROV Ontology.

 The computational approaches are different in this case.  PROV assumes a 
 reasoner is being used and I was assuming manipulation of the RDF 
 triples.  Many ways to work at this (all of which are beyond the scope of 
 this forum) and the key is probably to choose one that fits your needs best 
 and is computationally feasible.  Your miles will vary...

 --Scott

  On 8/31/2013 11:51 AM, Kevin Tyson wrote:
  
 The W3C Provenance ontology does a very good job of associating time with 
 properties that represent causal relationships by employing the qualified 
 relations pattern.  
 http://www.w3.org/TR/prov-o/
 This allows the ordering information to be considered during inference 
 which I don't think would work with reification. 

  
  
 On Saturday, August 31, 2013, Scott Henninger wrote:

  Paul; No, that's not the implication. Currently you need a file for 
 each graph (RDF 1.1 will likely change this).

  So the quad structure you refer to is already there. All triples live 
 within a graph, and graphs are named - with a URI, the base URI for 
 TopBraid - and can be accessed through SPARQL GRAPH.

  To add a fifth dimension to the triple for time would not be a 
 standards-based solution and therefore of marginal interest to vendors, 
 such as TopQuadrant.

  Not sure why reification is ruled out - you can always represent the 
 triple metadata, such as time, in reification in the back-end and generate 
 the non-reified triples in memory when needed. I.e. given an epoch of time 
 that needs to be queried (displayed, etc.), compute the triples for the 
 epoch using the reified metadata. It's fairly simple to do computationally, 
 and is essentially what EVN does with Working Copies.  Generally speaking, 
 reification is not such a bad solution.

  Named Graphs could be manipulated in a similar way for time, but I'm 
 sketchier on the details. One thought is to represent the timed data in a 
 graph, one per epoch. Then import the desired epoch graph into the rest of 
 the data.

  Beyond those sketchy details, this is an active area for a number of 
 standards bodies, and I'd suggest looking into some of those approaches.

 -- Scott 

  
   
 On Aug 31, 2013, at 9:12 AM, PaulZH p...@proxml.be wrote:

   Scott,

 Do I understand this well that for every triple that gets a (graph) id 
 which can then be used to attach time related data on it, needs to have its 
 own file?
 We are ending up with zillions of files then.


 Paul



 On Friday, August 30, 2013 4:56:17 PM UTC+2, Scott Henninger wrote: 

  Paul; TopBraid does use a named graph architecture.  Each file, be they 
 a text serialization or a back-end connector, contains a graph identifier 
 using the base URI.

 So you may be able to manipulate this though multiple files and import 
 them using owl:imports.  A file can be imported anywhere and in multiple 
 places, so I think that will get you close to your use case.

 -- Scott

 On 8/30/2013 3:14 AM, PaulZH wrote:
  
 Hi,

 I would like some advice on this requirement.

 Context.
 Time info should be added to certain statements/triples (e.g. when valid 
 in the real world)).

 Choices made:
 - not to use reification
 - not to use the Qualified Relation pattern
 but to use the graph id (4th slot) for adding this info to mimic property 
 graphs in graph databases such as Neo4J.

 What I do not see for the moment is an easy workflow to do this in TBC as 
 editing environment.

 Any input on this is appreciated.


 Paul
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Re: [topbraid-users] property graph using graph identifier

[PaulZH]

Scott,

Do I understand this well that for every triple that gets a (graph) id 
which can then be used to attach time related data on it, needs to have its 
own file?
We are ending up with zillions of files then.


Paul



On Friday, August 30, 2013 4:56:17 PM UTC+2, Scott Henninger wrote:

  Paul; TopBraid does use a named graph architecture.  Each file, be they 
 a text serialization or a back-end connector, contains a graph identifier 
 using 
 the base URI.

 So you may be able to manipulate this though multiple files and import 
 them using owl:imports.  A file can be imported anywhere and in multiple 
 places, so I think that will get you close to your use case.

 -- Scott

  On 8/30/2013 3:14 AM, PaulZH wrote:
  
 Hi,

 I would like some advice on this requirement.

 Context.
 Time info should be added to certain statements/triples (e.g. when valid 
 in the real world)).

 Choices made:
 - not to use reification
 - not to use the Qualified Relation pattern
 but to use the graph id (4th slot) for adding this info to mimic property 
 graphs in graph databases such as Neo4J.

 What I do not see for the moment is an easy workflow to do this in TBC as 
 editing environment.

 Any input on this is appreciated.


 Paul
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[topbraid-users] property graph using graph identifier

[PaulZH]

Hi,

I would like some advice on this requirement.

Context.
Time info should be added to certain statements/triples (e.g. when valid in 
the real world)).

Choices made:
- not to use reification
- not to use the Qualified Relation pattern
but to use the graph id (4th slot) for adding this info to mimic property 
graphs in graph databases such as Neo4J.

What I do not see for the moment is an easy workflow to do this in TBC as 
editing environment.

Any input on this is appreciated.


Paul

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[topbraid-users] 4.3 and Topbraid Insight

[PaulZH]

Selecting via menu 'Open Topbraid Insight'
I get

HTTP ERROR 500 

Problem accessing /tbl/swp. Reason: 

An internal error has been reported by the SWP engine of TopBraid Live.

Summary: [Could not find registered ui:Element for tbiui:Index]

Details: java.lang.IllegalArgumentException: Could not find registered 
ui:Element for tbiui:Index
at 
org.topbraid.spin.swp.servlet.SWPServletUtil.runUncached(SWPServletUtil.java:540)
at 
org.topbraid.spin.swp.servlet.SWPServletUtil.run(SWPServletUtil.java:425)
at org.topbraidlive.swp.servlet.SWPServlet.run(SWPServlet.java:162)
at org.topbraidlive.swp.servlet.SWPServlet.run(SWPServlet.java:140)
at org.topbraidlive.swp.servlet.SWPServlet.run(SWPServlet.java:123)
at org.topbraidlive.swp.servlet.SWPServlet.doGet(SWPServlet.java:62)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
at 
org.topbraid.eclipsex.servlet.TBHttpServlet.service(TBHttpServlet.java:115)
at 
org.eclipse.equinox.http.registry.internal.ServletManager$ServletWrapper.service(ServletManager.java:180)
at 
org.eclipse.equinox.http.servlet.internal.ServletRegistration.service(ServletRegistration.java:61)
at 
org.eclipse.equinox.http.servlet.internal.ProxyServlet.processAlias(ProxyServlet.java:126)
at 
org.eclipse.equinox.http.servlet.internal.ProxyServlet.service(ProxyServlet.java:60)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
at 
org.eclipse.equinox.http.jetty.internal.HttpServerManager$InternalHttpServiceServlet.service(HttpServerManager.java:317)
at 
org.mortbay.jetty.servlet.ServletHolder.handle(ServletHolder.java:511)
at 
org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:401)
at 
org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182)
at 
org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:766)
at 
org.mortbay.jetty.handler.HandlerWrapper.handle(HandlerWrapper.java:152)
at org.mortbay.jetty.Server.handle(Server.java:326)
at 
org.mortbay.jetty.HttpConnection.handleRequest(HttpConnection.java:542)
at 
org.mortbay.jetty.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:928)
at org.mortbay.jetty.HttpParser.parseNext(HttpParser.java:549)
at org.mortbay.jetty.HttpParser.parseAvailable(HttpParser.java:212)
at org.mortbay.jetty.HttpConnection.handle(HttpConnection.java:404)
at 
org.mortbay.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:410)
at 
org.mortbay.thread.QueuedThreadPool$PoolThread.run(QueuedThreadPool.java:586)

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[topbraid-users] skosspin.spin.ttl

[PaulZH]

Are the constraints for rules S46a and S46b complete?

I get always an error, whatever value I use.

Not if I change the spin file and use additionally a filter comparing the 
values.


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Re: [topbraid-users] Import RDF or OWL file from the Web

[PaulZH]

Holger,

Any input if and when this is on the roadmap?

On Monday, November 12, 2012 11:51:33 AM UTC+1, Holger Knublauch wrote:

 On 11/12/2012 19:51, PaulZH wrote: 
  TBC ME 3.6.2 on Mac OSX 
  
  Import RDF or OWL file from the web: 
  source url: http://www.ontotext.com/proton/protonext 
  target file name: protonext.ttl 

 This expects RDF/XML format, not Turtle. You will need to manually 
 download it for now. 

 Holger 



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Re: [topbraid-users] request

[PaulZH]

Thanks.


Paul

On Sunday, April 14, 2013 5:36:37 PM UTC+2, Scott Henninger wrote:

  Paul; Not sure if we followed this up.  We will get it on our 
 enhancementlist.

 -- Scott

  On 4/3/2013 12:33 PM, PaulZH wrote:
  
 Scott,

 It is the filter by subject I was referring to. 
 See screenshot, where I would like to indicate multiple individuals.
 Shift-click or Command-click doesn't work here, unless I'm overlooking 
 something.

 Paul

 On Wednesday, April 3, 2013 6:02:39 PM UTC+2, Scott Henninger wrote: 

  OK, but what kind of filter do you refer to?  You can currently choose 
 any number of items with shift-click (chooses all between) or cmd-click 
 (choose multiple single instances).  After dropping you have the option 
 of including different kinds of triples that depend on the ones you have 
 chosen.

 In the end, though, no user interface will replace the amount of 
 flexibility you get from SPARQL, and if it is an action that is repeated 
 often, then use SPARQLMotion.  An effective way to create a custom move 
 operation is to use the Basket with the tops:basket property function 
 (see Help  Reference  SPARQL Property Functions
  

 Yes, will investigate.


 Paul
  

  
 -- Scott

  On 4/2/2013 1:10 PM, PaulZH wrote:
  
 Hi Scot,

 I'm afraid I have not explained the context well enough.

 I want to move triples from one graph to another using the triples view 
 with a batch operation using the basket as explained in the docs (see 
 below).
 For the case I'm working on being able to filter more than one subject 
 would be nice.


 

 *Moving resources using the Triples View* 

 The upper part of the Triples View shows a list of all modules (sub-graphs) 
 of the current model. You can drag and drop triples from the lower part, or 
 for example from the Basket 
 Viewhttp://127.0.0.1:52147/help/topic/org.topbraidcomposer.help/html/Basket_View.htmonto
  the models. With the Basket, the steps are similar to the procedure 
 described in Option 2 below, but drag them over the target graph in the 
 Triples View instead of the target file in the Navigator. You should see 
 something like the screenshot below:

  Alternatively, you can select one or more triples from the lower part 
 and then drag them into the target model. For example, in an ontology about 
 units, assume you have started with one large model (containing all units 
 such as meters and katal) and later you find that you should simplify the 
 model. You could for example create a submodel for all chemistry units, one 
 for physics etc. You would create the domain specific models (here: 
 abbreviated with n2unitsChem for the chemistry ontology) and then import 
 the base ontology (n1units) into it. As the next step, we can move all 
 chemistry related units into the new, empty chemistry ontology. 

 In order to prepare this, we should first identify those resources that 
 shall be moved, and change their namespace. The Batch 
 Operationhttp://127.0.0.1:52147/help/topic/org.topbraidcomposer.help/html/BatchOperations.htmChange
  Namespace can do this for all resources in the basket. After this, 
 the triples related to the chemistry domain can easily identified in the 
 Triples View, as shown below. Select them and then drag them into the 
 target file as shown. 



 On Tuesday, April 2, 2013 12:09:41 PM UTC+2, Scott Henninger wrote: 

  Paul, can your try the following?  

  SELECT *
 WHERE
 { ?s ?p ?o
 } ORDER BY ?s DESC(?p)

  ...which will get you an ascending sort of subjects with a descending 
 sort of predicates.

  It's basically the same as the triples view, including the fact that 
 you get the first 1000 triples, which can be modified in the preferences.

 -- Scott

 On Apr 2, 2013, at 9:22 AM, PaulZH pa...@proxml.be wrote:

  Context: triples view
 Function: Filter by Subject.

 I would like to select multiple values for filtering.



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[topbraid-users] export/merge/convert graphs

[PaulZH]

When asking in TBC an export, more specifically an export/merge/convert 
graphs, I can indicate which graphs, of all the ones I have imported in my 
main file, to include in the export.
Now I want to use SPARQLMotion for doing the same (to do an export/merge), 
but I do not see where and how to influence the graphs that I want to 
include.

Any pointer into the documentation?



Paul



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Re: [topbraid-users] export/merge/convert graphs

[PaulZH]

OK,  I see that I have to set ignoreImports on my main file, which has been 
loaded from the workspace, to true and add all the graphs that I want.
However I would prefer to keep the main file with all the imports, since I 
need all graphs for querying and inferencing and it is only at the end that 
I do not want to export them all.


Paul


On Wednesday, April 10, 2013 3:51:35 PM UTC+2, Scott Henninger wrote:

  Paul; In that case use an 
 sml:ImportRDFFromWorkspace/sml:ImportRDFFromURL/etc. and tie these to a 
 module that saves the resulting triple stream in a file/connector/export 
 module.

 For documentation, the tutorial at 
 http://www.topquadrant.com/products/SPARQLMotion.html goes over this 
 pretty well.

 -- Scott
  On 4/10/2013 9:43 AM, PaulZH wrote:
  
 When asking in TBC an export, more specifically an export/merge/convert 
 graphs, I can indicate which graphs, of all the ones I have imported in my 
 main file, to include in the export.
 Now I want to use SPARQLMotion for doing the same (to do an export/merge), 
 but I do not see where and how to influence the graphs that I want to 
 include.

 Any pointer into the documentation?



 Paul



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[topbraid-users] export (SPARQL CONSTRUCT) results to ...

[PaulZH]

Having done a SPARQL construct,
asking to export the results to file,
I only get the option to serialise to RDF/XML.

Is it possible to get other formats such as turtle?

A related question.
In this export I do get a very long list of namespace declarations, while 
only a few are being used.
Is it possible to influence this list?

xmlns:evnimport=http://evn.topbraidlive.org/uispin/evnimport#;
xmlns:html=http://uispin.org/html#; 
xmlns:teamwork=http://topbraid.org/teamwork#;
xmlns:tbcgeo=http://www.topbraidcomposer.org/owl/2006/07/tbcgeo.owl#;
xmlns:sm2wsdl=http://topbraid.org/sparqlmotion/sm2wsdl.sms#;
xmlns:arg=http://spinrdf.org/arg#;

xmlns:spellCheck=http://evn.topbraidlive.org/static/scripts/spellcheck-report#;
xmlns:sml=http://topbraid.org/sparqlmotionlib#; 
xmlns:sm=http://topbraid.org/sparqlmotion#;
xmlns:geo=http://www.w3.org/2003/01/geo/wgs84_pos#; 
xmlns:charts=http://uispin.org/charts#;
xmlns:skosspin=http://topbraid.org/spin/skosspin#;
xmlns:owlrl=http://topbraid.org/spin/owlrl#; 
xmlns:swon=http://uispin.org/swon#;
xmlns:skosapp=http://topbraid.org/skos/skosapp.ui#;
xmlns:spinmapl=http://topbraid.org/spin/spinmapl#;
xmlns:evnui=http://evn.topbraidlive.org/ui#; 
xmlns:sp=http://spinrdf.org/sp#;
xmlns:owl=http://www.w3.org/2002/07/owl#; 
xmlns:dcam=http://purl.org/dc/dcam/;
xmlns:spl=http://spinrdf.org/spl#; 
xmlns:fn=http://www.w3.org/2005/xpath-functions#;
xmlns:tbl=http://topbraidlive.org/functions#;
xmlns:tagger=http://evn.topbraidlive.org/tagger#; 
xmlns:spinmap=http://spinrdf.org/spinmap#;
xmlns:rdf=http://www.w3.org/1999/02/22-rdf-syntax-ns#; 
xmlns:uix=http://topbraidlive.org/uix#;
xmlns:tablesmap=http://topbraid.org/spin/tablesmap#;
xmlns:afn=http://jena.hpl.hp.com/ARQ/function#; 
xmlns:spin=http://spinrdf.org/spin#;
xmlns:extjs=http://uispin.com/extjs#; 
xmlns:smf=http://topbraid.org/sparqlmotionfunctions#;
xmlns:pf=http://jena.hpl.hp.com/ARQ/property#; 
xmlns:spif=http://spinrdf.org/spif#;
xmlns:dct=http://purl.org/dc/terms/;
xmlns:skostemplate=http://topbraid.org/spin/skostemplates#;
xmlns:xsd=http://www.w3.org/2001/XMLSchema#; 
xmlns:tops=http://www.topbraid.org/tops#;
xmlns:tables=http://topbraid.org/tables#; 
xmlns:skos=http://www.w3.org/2004/02/skos/core#;
xmlns:ui=http://uispin.org/ui#; 
xmlns:dc=http://purl.org/dc/elements/1.1/;
xmlns:spra=http://spinrdf.org/spra#;
xmlns:sparql=http://www.topbraidcomposer.org/owl/2006/09/sparql.owl#;
xmlns:swa=http://topbraid.org/swa#;

xmlns:travel=http://www.topbraidcomposer.org/owl/2006/07/geotravel.owl#;
xmlns:spr=http://spinrdf.org/spr#;
xmlns:evnconstraints=http://topbraid.org/spin/evnconstraints#;
xmlns:jfn=java:com.hp.hpl.jena.sparql.function.library.
xmlns:rdfs=http://www.w3.org/2000/01/rdf-schema#;



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[topbraid-users] owl:disjointWith

[PaulZH]

using property owl:disjointWith
using Add existing ...
Then choosing multiple values from the list (on Mac using the command key).

As result I do get all the chosen values plus owl:Thing, which puzzles me.


Paul

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attachment: Screen Shot 2013-04-02 at 10.04.21.png

[topbraid-users] request

[PaulZH]

Context: triples view
Function: Filter by Subject.

I would like to select multiple values for filtering.



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Re: [topbraid-users] request

[PaulZH]

Hi Scot,

I'm afraid I have not explained the context well enough.

I want to move triples from one graph to another using the triples view 
with a batch operation using the basket as explained in the docs (see 
below).
For the case I'm working on being able to filter more than one subject 
would be nice.



*Moving resources using the Triples View* 

The upper part of the Triples View shows a list of all modules (sub-graphs) 
of the current model. You can drag and drop triples from the lower part, or 
for example from the Basket 
Viewhttp://127.0.0.1:52147/help/topic/org.topbraidcomposer.help/html/Basket_View.htmonto
 the models. With the Basket, the steps are similar to the procedure 
described in Option 2 below, but drag them over the target graph in the 
Triples View instead of the target file in the Navigator. You should see 
something like the screenshot below:

 Alternatively, you can select one or more triples from the lower part and 
then drag them into the target model. For example, in an ontology about 
units, assume you have started with one large model (containing all units 
such as meters and katal) and later you find that you should simplify the 
model. You could for example create a submodel for all chemistry units, one 
for physics etc. You would create the domain specific models (here: 
abbreviated with n2unitsChem for the chemistry ontology) and then import 
the base ontology (n1units) into it. As the next step, we can move all 
chemistry related units into the new, empty chemistry ontology. 

In order to prepare this, we should first identify those resources that 
shall be moved, and change their namespace. The Batch 
Operationhttp://127.0.0.1:52147/help/topic/org.topbraidcomposer.help/html/BatchOperations.htmChange
 Namespace can do this for all resources in the basket. After this, 
the triples related to the chemistry domain can easily identified in the 
Triples View, as shown below. Select them and then drag them into the 
target file as shown. 



On Tuesday, April 2, 2013 12:09:41 PM UTC+2, Scott Henninger wrote:

 Paul, can your try the following?  

 SELECT *
 WHERE
 { ?s ?p ?o
 } ORDER BY ?s DESC(?p)

 ...which will get you an ascending sort of subjects with a descending sort 
 of predicates.

 It's basically the same as the triples view, including the fact that you 
 get the first 1000 triples, which can be modified in the preferences.

 -- Scott

 On Apr 2, 2013, at 9:22 AM, PaulZH pa...@proxml.be javascript: wrote:

 Context: triples view
 Function: Filter by Subject.

 I would like to select multiple values for filtering.



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[topbraid-users] default SWA application in 4.2 beta

[PaulZH]

I'm using the in TBC supplied example geotravel.owl file and I do not get 
all the classes. See attached screen shot.
Is there something additional to be configured?

Paul

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attachment: Screen Shot 2013-03-26 at 08.30.09.png

[topbraid-users] Re: documentation export

[PaulZH]

Solved it meanwhile.

On Thursday, March 21, 2013 9:17:17 AM UTC+1, PaulZH wrote:

 File: all-Classes-frame.html doesn't seem to be generated. 
 Checked in export folder: is indeed not available.

 See screen shot.




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[topbraid-users] help indexing not working in latest version

[PaulZH]

Context: 
Mac OS X 10.8.2 (12C60)
TBCME Version: 4.1.0.v20121228-2356R

When doing the first query in TBCME, the help system goes to indexing but 
stays at 0% complete.


Paul

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[topbraid-users] Import RDF or OWL file from the Web

[PaulZH]

TBC ME 3.6.2 on Mac OSX

Import RDF or OWL file from the web:
source url: http://www.ontotext.com/proton/protonext
target file name: protonext.ttl 

gives 
could not read from http://www.ontotext.com/proton/protonext;.

Opening this file in a browser just works fine:

# Saved by TopBraid on Tue Feb 14 13:40:22 EET 2012
# baseURI: http://www.ontotext.com/proton/protonext
# imports: http://www.ontotext.com/proton/protonsys.ttl
# imports: http://www.ontotext.com/proton/protontop.ttl
# imports: http://www.ontotext.com/proton/protonkm.ttl

In the log
!ENTRY org.topbraid.eclipsex 4 0 2012-11-12 10:50:55.330
!MESSAGE ERROR [ModalContext] (RDFDefaultErrorHandler.java:59) - 
http://www.ontotext.com/proton/protonext(line 1 column 1): Content is not 
allowed in prolog.
 


Paul

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[topbraid-users] N3 to turtles

[PaulZH]

I remember that in one of the previous versions of TBC turtle has been 
favored over the n3 serialisation.
I do not seem able to find the text back explaining the rationale of this 
move.

Anyone having this pointer?


Thanks.

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Re: [topbraid-users] Re: import SPARQL endpoint

[PaulZH]

Hi Gokhan,

2 remarks in this context:
a) in TBC's user interface the field for indicating the default graph is 
indicated as optional
b) Sesame can be used as a triple store not using the fourth slot for 
indicating the graph the triple belongs, e.g. having the null context.

Hence
http://localhost:/openrdf-sesame/repositories/OWMS?query=SELECT++*%0AWHERE%0A++%7B+%3Fs+%3Chttp%3A%2F%2Fwww.w3.org%2F1999%2F02%2F22-rdf-syntax-ns%23type%3E+%3Fo+%7D%0ALIMIT+++1%0A
*default-graph-uri=*
as generated by TBC is not working where
http://localhost:/openrdf-sesame/repositories/OWMS?query=SELECT++*%0AWHERE%0A++%7B+%3Fs+%3Chttp%3A%2F%2Fwww.w3.org%2F1999%2F02%2F22-rdf-syntax-ns%23type%3E+%3Fo+%7D%0ALIMIT+++1%0A
does

But I have to agree that the differences between tools in what the default 
graph is and does, make this a rather messy chapter.


Paul


On Monday, August 13, 2012 12:38:17 AM UTC+2, Gokhan Soydan wrote:

 Paul,

 This looks strange although I think at least the default graph URI should 
 have been provided.

 Gokhan

 On Mon, Aug 13, 2012 at 1:37 AM, Gokhan Soydan 
 gso...@topquadrant.comjavascript:
  wrote:

 Paul,

 This looks strange although at least the default graph URI

 Gokhan



 On Thu, Aug 9, 2012 at 1:00 PM, PaulZH pa...@proxml.be javascript:wrote:

 Additional info on this issue.

 When not filling in the optional connection parameters 'Default Graph 
 URI' and 'Named Graph URI' TBC composes following query to the endpoint.
 GET 
 http://localhost:3030/ds/query?query=SELECT++*%0AWHERE%0A++%7B+%3Fs+%3Chttp%3A%2F%2Fwww.w3.org%2F1999%2F02%2F22-rdf-syntax-ns%23type%3E+%3Fo+%7D%0ALIMIT+++1%0A;
 *default-graph-uri=named-graph-uri=*

 In the case of fuseki it generates warnings:
 11:52:47 WARN  Fuseki   :: SPARQL Query: Unrecognize request 
 parameter (ignored): default-graph-uri
 11:52:47 WARN  Fuseki   :: SPARQL Query: Unrecognize request 
 parameter (ignored): named-graph-uri

 But in the case of Sesame I get:
 HTTP/1.1 400 Bad Request
 Content-Length: 31
 Server: Apache-Coyote/1.1
 Content-Type: text/plain;charset=UTF-8
 Content-Language: en-US
 Date: Thu, 09 Aug 2012 09:44:50 GMT
 Connection: close

 Illegal URI for default graph.

 Paul









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Re: [topbraid-users] Re: import SPARQL endpoint

[PaulZH]

Additional info on this issue.

When not filling in the optional connection parameters 'Default Graph URI' 
and 'Named Graph URI' TBC composes following query to the endpoint.
GET 
http://localhost:3030/ds/query?query=SELECT++*%0AWHERE%0A++%7B+%3Fs+%3Chttp%3A%2F%2Fwww.w3.org%2F1999%2F02%2F22-rdf-syntax-ns%23type%3E+%3Fo+%7D%0ALIMIT+++1%0A;
*default-graph-uri=named-graph-uri=*

In the case of fuseki it generates warnings:
11:52:47 WARN  Fuseki   :: SPARQL Query: Unrecognize request 
parameter (ignored): default-graph-uri
11:52:47 WARN  Fuseki   :: SPARQL Query: Unrecognize request 
parameter (ignored): named-graph-uri

But in the case of Sesame I get:
HTTP/1.1 400 Bad Request
Content-Length: 31
Server: Apache-Coyote/1.1
Content-Type: text/plain;charset=UTF-8
Content-Language: en-US
Date: Thu, 09 Aug 2012 09:44:50 GMT
Connection: close

Illegal URI for default graph.

Paul











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[topbraid-users] Re: import SPARQL endpoint

[PaulZH]

Scott,

Unfortunatily indicating the default graph for a Sesame connection gives 
the same error: No graph defined at the endpoint

Paul

On Friday, June 29, 2012 4:02:22 AM UTC+2, Scott Henninger wrote:

 Paul; Try specifying the graph you are trying to query in Sesame in 
 the Default graph area for the connector.  I.e. sml:defaultGraphURI. 
 If you want to get to the default graph for your repository, then it 
 will be whatever URI Sesame knows the default graph as. 

 -- Scott 

 On Jun 28, 6:52 am, PaulZH p...@proxml.be wrote: 
  Scott, 
  
  It is an announced new feature of TBCME 3.6.1, see release notes: 
  
  TopBraid Composer - Maestro Edition 
  - Feature: SPARQL end point connector was brought back with 
 authentication support. 
  
  It's about importing (cf. import menuitem), not about using this from 
 SPARQLMotion. 
  From the Help file. 
  
  Import SPARQL Endpoints 
  
  This feature is available in TopBraid Composer - Maestro Edition
 http://topquadrant.com/products/TB_Composer.html#maestroonly. 
  You can import SPARQL endpoints in TopBraid Composer - Maestro Edition. 
  
  Paul 
  
  
  
  
  
  
  
  On Wednesday, June 27, 2012 9:55:30 PM UTC+2, Scott Henninger wrote: 
  
   Paul; What version of TBC or TBL are you using?  Currently, 
   sml:ImportSPARQLEndpoint is not a supported module (see Help  
   Reference  SPARQLMotion Module Library Reference).  We are looking to 
   create new features for using SPARQL endpoints in a future release of 
   TBC. but for now, it is sufficient to use the SERVICE keyword in an 
   ApplyConstruct, PerformUpdate, or SELECT query modules. 
  
   -- Scott 
  
   On Jun 27, 10:23 am, PaulZH p...@proxml.be wrote: 
Hi, 
  
I connected succesfully to a Fuseki SPARQL endpoint using following 
settings: 
[]rdf:type sml:ImportSPARQLEndpoint ; 
  sml:baseURI http://import.org/fuseki; ; 
  sml:defaultGraphURI  ; 
  sml:imports () ; 
  sml:namedGraphURI  ; 
  sml:url http://localhost:3030/ds/query; ; 
  sml:userName  . 
  
Now I want to do the same for a Sesame endpoint: 
[]rdf:type sml:ImportSPARQLEndpoint ; 
  sml:baseURI http://import.org/sesame; ; 
  sml:defaultGraphURI  ; 
  sml:imports () ; 
  sml:namedGraphURI  ; 
  sml:url 
 http://localhost:/openrdf-sesame/repositories/OWMS; 
   ; 
  sml:userName  . 
  
but I get following error: 
Reason: 
java.io.IOException: java.lang.Exception: No graph defined at the 
   endpoint 
defined by the file L/Test/tosesame.sparqlep 
  
I am able to query this SPARQL endpoint from outside TBC and from 
 within 
TBC using the SERVICE keyword 
SELECT * 
WHERE { 
   SERVICE http://localhost:/openrdf-sesame/repositories/OWMS 
   { ?subject rdfs:subClassOf ?object .} 
  
}

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[topbraid-users] Re: import SPARQL endpoint

[PaulZH]

Scott,

It is an announced new feature of TBCME 3.6.1, see release notes:

TopBraid Composer - Maestro Edition
- Feature: SPARQL end point connector was brought back with authentication 
support.

It's about importing (cf. import menuitem), not about using this from 
SPARQLMotion.
From the Help file.

Import SPARQL Endpoints 

This feature is available in TopBraid Composer - Maestro 
Editionhttp://topquadrant.com/products/TB_Composer.html#maestroonly.
You can import SPARQL endpoints in TopBraid Composer - Maestro Edition.


Paul

On Wednesday, June 27, 2012 9:55:30 PM UTC+2, Scott Henninger wrote:

 Paul; What version of TBC or TBL are you using?  Currently, 
 sml:ImportSPARQLEndpoint is not a supported module (see Help  
 Reference  SPARQLMotion Module Library Reference).  We are looking to 
 create new features for using SPARQL endpoints in a future release of 
 TBC. but for now, it is sufficient to use the SERVICE keyword in an 
 ApplyConstruct, PerformUpdate, or SELECT query modules. 

 -- Scott 

 On Jun 27, 10:23 am, PaulZH p...@proxml.be wrote: 
  Hi, 
  
  I connected succesfully to a Fuseki SPARQL endpoint using following 
  settings: 
  []rdf:type sml:ImportSPARQLEndpoint ; 
sml:baseURI http://import.org/fuseki; ; 
sml:defaultGraphURI  ; 
sml:imports () ; 
sml:namedGraphURI  ; 
sml:url http://localhost:3030/ds/query; ; 
sml:userName  . 
  
  Now I want to do the same for a Sesame endpoint: 
  []rdf:type sml:ImportSPARQLEndpoint ; 
sml:baseURI http://import.org/sesame; ; 
sml:defaultGraphURI  ; 
sml:imports () ; 
sml:namedGraphURI  ; 
sml:url http://localhost:/openrdf-sesame/repositories/OWMS; 
 ; 
sml:userName  . 
  
  but I get following error: 
  Reason: 
  java.io.IOException: java.lang.Exception: No graph defined at the 
 endpoint 
  defined by the file L/Test/tosesame.sparqlep 
  
  I am able to query this SPARQL endpoint from outside TBC and from within 
  TBC using the SERVICE keyword 
  SELECT * 
  WHERE { 
 SERVICE http://localhost:/openrdf-sesame/repositories/OWMS 
 { ?subject rdfs:subClassOf ?object .} 
  
  
  
  
  
  
  
  }

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[topbraid-users] Re: SPARQLMotion: sml:SerializeSPARQLResults

[PaulZH]

Thanks Holger for the clarification.

Indeed, it is paging that I'm after.

Any suggestion for a possible approach in TBCME is welcome.


Paul

On Tuesday, June 26, 2012 3:52:50 PM UTC+2, PaulZH wrote:

 question related to parameter: sml:selectQuery of SPARQLMotion modfule: 
 sml:SerializeSPARQLResults

 Is it possible to set the LIMIT of the SPARQL SELECT from outside?

 SELECT *
 WHERE {
 ?a a vl:School .
 }
 LIMIT ?comingfrompreviousmodules.



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[topbraid-users] import SPARQL endpoint

[PaulZH]

Hi,

I connected succesfully to a Fuseki SPARQL endpoint using following 
settings:
[]rdf:type sml:ImportSPARQLEndpoint ;
  sml:baseURI http://import.org/fuseki; ;
  sml:defaultGraphURI  ;
  sml:imports () ;
  sml:namedGraphURI  ;
  sml:url http://localhost:3030/ds/query; ;
  sml:userName  .

Now I want to do the same for a Sesame endpoint:
[]rdf:type sml:ImportSPARQLEndpoint ;
  sml:baseURI http://import.org/sesame; ;
  sml:defaultGraphURI  ;
  sml:imports () ;
  sml:namedGraphURI  ;
  sml:url http://localhost:/openrdf-sesame/repositories/OWMS; ;
  sml:userName  .

but I get following error:
Reason:
java.io.IOException: java.lang.Exception: No graph defined at the endpoint 
defined by the file L/Test/tosesame.sparqlep

I am able to query this SPARQL endpoint from outside TBC and from within 
TBC using the SERVICE keyword
SELECT *
WHERE {
   SERVICE http://localhost:/openrdf-sesame/repositories/OWMS
   { ?subject rdfs:subClassOf ?object .}
}

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Re: [topbraid-users] Re: encoding issue

[PaulZH]

It wasn't copied to the .ini file, so I copied it myself.
Now it doesn't choke anymore on the encoding issue, but I run now into 
other problems.
TBC hangs at the end of the script. Do some more investigation.


Paul

On Monday, June 25, 2012 11:55:50 PM UTC+2, Gokhan Soydan wrote:

 Paul,

 Could you check if TopBraid Composer.ini file (the one without the .orig) 
 also has the line -Dfile.encoding=UTF-8 ? It should have been automatically 
 copied over from the .orig file, when you restarted TBC. If not, I would 
 suggest putting that line also into the TopBraid Composer.ini file.

 Gokhan


 On Mon, Jun 25, 2012 at 10:16 PM, PaulZH p...@proxml.be wrote:

 Hi Gokhan,

 Tried this, but with no succes.

 My TopBraid Composer.ini.orig within the Package contents on Mac 
 (Contents-MacOS)
 ends now with -Dfile.encoding=UTF-8.

 Paul



 On Monday, June 25, 2012 5:51:33 PM UTC+2, PaulZH wrote:

 I have as a result of an XSLT transformation XML which is well-formed.
  
 lt;http://www.vlaanderen.be/**school/S013938gthttp://www.vlaanderen.be/school/S013938gt;
  
 lt;http://purl.org/dc/terms/**titlegthttp://purl.org/dc/terms/titlegt; 
 Vrije Kleuterschool - *Mozaïek*.

 However when I pass this xml as parameter sml:content to an instance of 
 sml:PostRequest the receiving server is complaining
 The request sent by the client was syntactically incorrect (Invalid 
 UTF-8 start byte 0x95 (at char #1829, byte #-1)).
 and indeed when I capture the http transmission I see
 lt;http://www.vlaanderen.be/**school/S013938gthttp://www.vlaanderen.be/school/S013938gt;
  
 lt;http://purl.org/dc/terms/**titlegthttp://purl.org/dc/terms/titlegt; 
 Vrije Kleuterschool - Moza••ek.


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[topbraid-users] Re: window cannot be closed?

[PaulZH]

Culprit was using an older version of Java. 
The strange (non-responsive) window behaviour appeared not only in TBC but 
also in other Java based software.

Paul

On Monday, June 25, 2012 7:35:14 PM UTC+2, PaulZH wrote:

 Doesn't happen all the time.
 I'll investigate more what the precise conditions are.

 Paul

 On Monday, June 25, 2012 5:38:19 PM UTC+2, PaulZH wrote:

 Did forget to mention that clicking on OK does not have any effect.

 On Monday, June 25, 2012 5:36:22 PM UTC+2, PaulZH wrote:

 Context:
 TBCME Version: 3.6.1.v20120622-1546R
 on Mac OS X Lion 10.7.4 (11E53)

 Pane: Error Log with Message Overview
 Double click on a message.
 The Event Details Window opens.

 I cannot figure out how to close this window again.



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Re: [topbraid-users] Re: encoding issue

[PaulZH]

The hanging was also caused by the older Java version.

On Tuesday, June 26, 2012 9:31:00 AM UTC+2, PaulZH wrote:

 It wasn't copied to the .ini file, so I copied it myself.
 Now it doesn't choke anymore on the encoding issue, but I run now into 
 other problems.
 TBC hangs at the end of the script. Do some more investigation.


 Paul

 On Monday, June 25, 2012 11:55:50 PM UTC+2, Gokhan Soydan wrote:

 Paul,

 Could you check if TopBraid Composer.ini file (the one without the .orig) 
 also has the line -Dfile.encoding=UTF-8 ? It should have been automatically 
 copied over from the .orig file, when you restarted TBC. If not, I would 
 suggest putting that line also into the TopBraid Composer.ini file.

 Gokhan


 On Mon, Jun 25, 2012 at 10:16 PM, PaulZH p...@proxml.be wrote:

 Hi Gokhan,

 Tried this, but with no succes.

 My TopBraid Composer.ini.orig within the Package contents on Mac 
 (Contents-MacOS)
 ends now with -Dfile.encoding=UTF-8.

 Paul



 On Monday, June 25, 2012 5:51:33 PM UTC+2, PaulZH wrote:

 I have as a result of an XSLT transformation XML which is well-formed.
  
 lt;http://www.vlaanderen.be/**school/S013938gthttp://www.vlaanderen.be/school/S013938gt;
  
 lt;http://purl.org/dc/terms/**titlegthttp://purl.org/dc/terms/titlegt;
  
 Vrije Kleuterschool - *Mozaïek*.

 However when I pass this xml as parameter sml:content to an instance of 
 sml:PostRequest the receiving server is complaining
 The request sent by the client was syntactically incorrect (Invalid 
 UTF-8 start byte 0x95 (at char #1829, byte #-1)).
 and indeed when I capture the http transmission I see
 lt;http://www.vlaanderen.be/**school/S013938gthttp://www.vlaanderen.be/school/S013938gt;
  
 lt;http://purl.org/dc/terms/**titlegthttp://purl.org/dc/terms/titlegt;
  
 Vrije Kleuterschool - Moza••ek.


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[topbraid-users] SPARQLMotion: sml:SerializeSPARQLResults

[PaulZH]

question related to parameter: sml:selectQuery of SPARQLMotion modfule: 
sml:SerializeSPARQLResults

Is it possible to set the LIMIT of the SPARQL SELECT from outside?

SELECT *
WHERE {
?a a vl:School .
}
LIMIT ?comingfrompreviousmodules.

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[topbraid-users] Re: SPARQLMotion: sml:SerializeSPARQLResults

[PaulZH]

I know, but I wondered if that integer could be passed on from another 
module.
But, deducting from your answer, it's just plain SPARQL.

Paul

On Tuesday, June 26, 2012 4:14:38 PM UTC+2, Scott Henninger wrote:

 Paul; Please check the SPARQL syntax on this one.  Only integers are 
 allowed for LIMIT. 

 -- Scott 

 On Jun 26, 9:52 am, PaulZH p...@proxml.be wrote: 
  question related to parameter: sml:selectQuery of SPARQLMotion modfule: 
  sml:SerializeSPARQLResults 
  
  Is it possible to set the LIMIT of the SPARQL SELECT from outside? 
  
  SELECT * 
  WHERE { 
  ?a a vl:School .} 
  
  LIMIT ?comingfrompreviousmodules.

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[topbraid-users] encoding issue

[PaulZH]

I have as a result of an XSLT transformation XML which is well-formed.
 lt;http://www.vlaanderen.be/school/S013938gt; 
lt;http://purl.org/dc/terms/titlegt; Vrije Kleuterschool - *Mozaïek*.

However when I pass this xml as parameter sml:content to an instance of 
sml:PostRequest the receiving server is complaining
The request sent by the client was syntactically incorrect (Invalid UTF-8 
start byte 0x95 (at char #1829, byte #-1)).
and indeed when I capture the http transmission I see
lt;http://www.vlaanderen.be/school/S013938gt; 
lt;http://purl.org/dc/terms/titlegt; Vrije Kleuterschool - Moza••ek.


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attachment: Screen Shot 2012-06-25 at 17.50.48.png

[topbraid-users] Re: window cannot be closed?

[PaulZH]

Doesn't happen all the time.
I'll investigate more what the precise conditions are.

Paul

On Monday, June 25, 2012 5:38:19 PM UTC+2, PaulZH wrote:

 Did forget to mention that clicking on OK does not have any effect.

 On Monday, June 25, 2012 5:36:22 PM UTC+2, PaulZH wrote:

 Context:
 TBCME Version: 3.6.1.v20120622-1546R
 on Mac OS X Lion 10.7.4 (11E53)

 Pane: Error Log with Message Overview
 Double click on a message.
 The Event Details Window opens.

 I cannot figure out how to close this window again.



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[topbraid-users] Re: encoding issue

[PaulZH]

Hi Gokhan,

Tried this, but with no succes.

My TopBraid Composer.ini.orig within the Package contents on Mac 
(Contents-MacOS)
ends now with -Dfile.encoding=UTF-8.

Paul


On Monday, June 25, 2012 5:51:33 PM UTC+2, PaulZH wrote:

 I have as a result of an XSLT transformation XML which is well-formed.
  lt;http://www.vlaanderen.be/school/S013938gt; lt;
 http://purl.org/dc/terms/titlegt; Vrije Kleuterschool - *Mozaïek*.

 However when I pass this xml as parameter sml:content to an instance of 
 sml:PostRequest the receiving server is complaining
 The request sent by the client was syntactically incorrect (Invalid UTF-8 
 start byte 0x95 (at char #1829, byte #-1)).
 and indeed when I capture the http transmission I see
 lt;http://www.vlaanderen.be/school/S013938gt; lt;
 http://purl.org/dc/terms/titlegt; Vrije Kleuterschool - Moza••ek.




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[topbraid-users] Re: difference in OWLIM inference results between used in SPARQLMotion versus from within TBC

[PaulZH]

Having a class hiërarchy
 owl:Thing
 dcterms:Agent
  overheid: Agent
overheid:Organisatie
overheid:Overheidsorganisatie
   overheid:Gemeente

 a) using a SPARQLMotion script
 1) import RDF from workspace
 2) applyOWLIM



For every :x rdf:type overheid:Gemeente OWLIM generates as expected:
:x rdf:type overheid:Overheidsorganisatie
:x rdf:type overheid:Organisatie 
:x rdf:type overheid:Agent
:x rdf:type dcterms:Agent
:x rdf:type owl:Thing
:x rdf:type rdfs:Resource

b) using TBC
run Inferences with engine OWLIM
none of those rdf:type statements are generated

What needs to be done to get the same results in TBC?

Paul

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[topbraid-users] difference in OWLIM inferences from SPARQLMotion versus from within TBC

[PaulZH]

Having a class hiërarchy
 owl:Thing
 dcterms:Agent
  overheid: Agent
overheid:Organisatie
overheid:Overheidsorganisatie
   overheid:Gemeente

a) using a SPARQLMotion script
 1) import RDF from workspace
 2) applyOWLIM

For every :x rdf:type overheid:Gemeente OWLIM generates as expected:
:x rdf:type overheid:Overheidsorganisatie
:x rdf:type overheid:Organisatie=20
:x rdf:type overheid:Agent
:x rdf:type dcterms:Agent
:x rdf:type owl:Thing
:x rdf:type rdfs:Resource

b) using TBC
run Inferences with engine OWLIM
none of those rdf:type statements are generated

What needs to be done to get the same results in TBC?

Paul

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[topbraid-users] Re: importing special characters

[PaulZH]

Aziza,

Your file is encoded in UTF-16(LE).

When using in TBC Import Tab Delimited Spreadsheet File, you get a
screen where you can use the second field 'Spreadsheet file text
encoding' to indicate UTF-16.

I suppose this will work.


Paul

On Jun 8, 8:22 pm, Scott Henninger shennin...@topquadrant.com wrote:
 As a quick check, make sure the text file is encoded in UTF-8.

 -- Scott

 On Jun 4, 9:14 pm, actress aziza.mamadolim...@gmail.com wrote:







  Hi,
  I wanted to import txt file with some arabic literals inside into TBC.
  (NOTE: arabic writing has been copied and pasted from some
  source(google translator).
  Initially .txt file was in .xlsx format.
  Then I saved it in tab delimited txt format.
  But when i imported it into TBC all arabic writing became marked
  with .
  I tried to use Unicode CSV tab in Excel to create .txt file. But also
  useless.
  Would appreciate your help very much indeed.

  Thanks

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[topbraid-users] Re: Post Request in SPARQLMotion

[PaulZH]

Good enough for me.

Paul

On Jun 8, 12:49 am, Holger Knublauch hol...@topquadrant.com wrote:
 On 6/7/2012 22:12, PaulZH wrote:

  When is release 3.6.1 to be expected?

 Looks like we will do a beta of 3.6.1 early next week and this would
 give you a good opportunity to test the change for your environment.
 Final release then a week or two later.

 Holger

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[topbraid-users] Re: import of special characters

[PaulZH]

Topbraid people have been busy at semtechbizz in San Fran and may have
overlooked it.
If your data are not sensitive, I can have a look at it.
As european I'm familiar with encoding issues.

On Jun 8, 9:42 am, actress aziza.mamadolim...@gmail.com wrote:
 Sorry , May I ask why my question remains without answer?

 On 8 июн, 09:48, actress aziza.mamadolim...@gmail.com wrote:







  Hi,
  How to import to TBC a text file containing arabic writings?

  Thanks

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[topbraid-users] Re: Post Request in SPARQLMotion

[PaulZH]

Hi Holger and Scott,

As you suggested I monitored what's sent over and this is what I did
found out:

User-Agent: TopBraidComposerME/3.6.0
Content-Type: application/x-www-form-urlencoded -- I need
application/xml
Host: xxx
Content-Length: 50

And the POST body is, as could be expected in the shape of form key/
value pairs.

contentType=application%2Fxmlcontent=%7B%3Fxml%7D

Any suggestion to get the correct Content-Type?

Based on the documentation
By default, the request will not include any variable bindings. In
order to pass in any other parameters, you need to subclass the
sml:PostRequest class and declare the additional arguments as
spin:constraints.
I subclassed the sml:PostRequest and added sml:content and
sml:contentType as spin:constraints but then they show up twice in the
debugger and the result is the same.

Paul

On Jun 7, 1:15 am, Holger Knublauch hol...@topquadrant.com wrote:
 On 6/7/2012 0:11, PaulZH wrote:







  I want to achieve from within TBCME the similar as using curl:

  curl $URL --data-binary @$f -H 'Content-type:application/xml'
  where $f refers to XML files.

  I have following situation in my SPARQLMotion script as seen in the
  debugger

  Argument sml:content (xsd:string) : (S)add..!-- more XML--  ../
  add
  Argument sml:contentType (xsd:string): (S) application/xml
  Argument sml:outputVariable (xsd:string): (S) response
  Argument sml:url (xsd:string) (S)http://www.etc...

  Using these arguments the external Tomcat server running Solr throws
  following error:
  HTTP Status 400 - missing content stream.

  What am I overlooking?

 Hi Paul,

 looks good to me, and I am not aware of open bugs for sml:PostRequest.
 You could probably check what's going out with a network monitor such as
 Http Debugger to see what request actually goes out. The error could for
 example be on the receiving end?

 Thanks,
 Holger

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[topbraid-users] Re: connection to remote sesame

[PaulZH]

Will send you the specifics in a seperate mail.

Paul

On Jun 6, 7:13 pm, Scott Henninger shennin...@topquadrant.com wrote:
 Paul; Please note the support Tiers we have defied for data back-ends
 in the Supported Repository Database Configurations section 
 ofhttp://www.topquadrant.com/products/supportedPlatforms3.6.html.  We
 work closely with the Tier-1 data stores to ensure proper performance
 and feature sets.  We will prioritize reports on these data back-ends
 that are failing to meet performance and other expectations of our
 customers.  The other back-ends are supported on an as-is basis.

 For Sesame/TBC, if you can give us specific parameters on when and how
 performance fails to meet expectations, we will prioritize the report
 for this fall when we do some maintenance work focusing on TBC.

 -- Scott

 On Jun 6, 12:41 am, PaulZH p...@proxml.be wrote:







  Was too quick.

  I made first the ttl file within TBC, then exported it via TBC to the
  remote sesame.

  Doing now a simple query from within TBC to the remote sesame takes
  forever.

  The same query works fluently:
  - in TBC on the original local ttl file
  - in the Sesame workbench
  - just HTTP posting it to the remote Sesame.

  Paul

  On May 31, 4:45 pm, PaulZH p...@proxml.be wrote:

   Hi Holger,

If you have time, an option worth trying would be to do the import of
the ttl file from TBC or SPARQLMotion, and not via Sesame directly.

   If importing via TBC, the performance seems to be OK.

   The
difference would be that it will then use Jena bnode identifiers and
these may be easier to round-trip.

   This seems to be the case. Will do further testing.

   Sorry we are a bit short on time with
SemTech preparations right now so may not be able to look into this
issue ourselves for a while.

   Understood, no problem.
   However the client would like to keep, if possible, the initial
   workflow, so it would be nice if you could find some time to look at
   it when SemTech is over.

   Paul

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[topbraid-users] Re: advice concerning TBC in combination with a remote triple store setup

[PaulZH]

Yes, I'm aware of that, but in this case it is just for 2 people
needing to cleanup some triples coming from other datasources.
Furthermore this is for a cultural heritage project where the budgets
are tight.

Paul

On Jun 6, 6:59 pm, Scott Henninger shennin...@topquadrant.com wrote:
 Yes, the alternative setup is TopBraid Live.  This is designed from
 the ground-up as a multi-user server platform.  Composer does not
 support support multi-user operations through remote back-ends
 explicitly.  Although this can be configured to work, we not not put
 any effort into testing such configuration.

 Please contact sa...@topquadrant.com for a quote on purchasing a TBL
 server.  They can talk about pricing options, which are quite
 flexible.

 -- Scott

 On Jun 6, 12:46 am, PaulZH p...@proxml.be wrote:







  What we like to have is having a few TBC clients that connect to a
  remote triple store.

  We have been testing this with a remote Sesame connection, but for the
  moment there are some issues with it (see other posts).

  Do you see alternatives to this setup?

  Preferably one that fits in the tight budgets of cultural heritage
  institutions.

  Paul

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[topbraid-users] Re: Post Request in SPARQLMotion

[PaulZH]

When is release 3.6.1 to be expected?


Paul

On Jun 7, 12:36 pm, Holger Knublauch hol...@topquadrant.com wrote:
 On 6/7/2012 17:29, PaulZH wrote:









  Hi Holger and Scott,

  As you suggested I monitored what's sent over and this is what I did
  found out:

  User-Agent: TopBraidComposerME/3.6.0
  Content-Type: application/x-www-form-urlencoded-- I need
  application/xml
  Host: xxx
  Content-Length: 50

  And the POST body is, as could be expected in the shape of form key/
  value pairs.

  contentType=application%2Fxmlcontent=%7B%3Fxml%7D

  Any suggestion to get the correct Content-Type?

  Based on the documentation
  By default, the request will not include any variable bindings. In
  order to pass in any other parameters, you need to subclass the
  sml:PostRequest class and declare the additional arguments as
  spin:constraints.
  I subclassed the sml:PostRequest and added sml:content and
  sml:contentType as spin:constraints but then they show up twice in the
  debugger and the result is the same.

 Yes, I looked into this and found out that the module accidentally turns
 contentType and content into name-value pairs, and if any such parameter
 is present then the Java class wraps the whole request into a
 application/x-www-form-urlencoded request. I have added code that
 suppresses sml:contentType and sml:content to be treated as (redundant)
 parameters and now it produces a post with the specified content-type
 (unless you have defined any other parameters explicitly). This fix will
 go into 3.6.1. Please contact me if you are blocked by this limitation
 until then.

 Thanks
 Holger

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[topbraid-users] Re: connection to remote sesame

[PaulZH]

Was too quick.

I made first the ttl file within TBC, then exported it via TBC to the
remote sesame.

Doing now a simple query from within TBC to the remote sesame takes
forever.

The same query works fluently:
- in TBC on the original local ttl file
- in the Sesame workbench
- just HTTP posting it to the remote Sesame.


Paul

On May 31, 4:45 pm, PaulZH p...@proxml.be wrote:
 Hi Holger,



  If you have time, an option worth trying would be to do the import of
  the ttl file from TBC or SPARQLMotion, and not via Sesame directly.

 If importing via TBC, the performance seems to be OK.

 The
  difference would be that it will then use Jena bnode identifiers and
  these may be easier to round-trip.

 This seems to be the case. Will do further testing.

 Sorry we are a bit short on time with
  SemTech preparations right now so may not be able to look into this
  issue ourselves for a while.

 Understood, no problem.
 However the client would like to keep, if possible, the initial
 workflow, so it would be nice if you could find some time to look at
 it when SemTech is over.

 Paul

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[topbraid-users] Post Request in SPARQLMotion

[PaulZH]

I want to achieve from within TBCME the similar as using curl:

curl $URL --data-binary @$f -H 'Content-type:application/xml'
where $f refers to XML files.

I have following situation in my SPARQLMotion script as seen in the
debugger

Argument sml:content (xsd:string) : (S) add..!-- more XML-- ../
add
Argument sml:contentType (xsd:string): (S) application/xml
Argument sml:outputVariable (xsd:string): (S) response
Argument sml:url (xsd:string) (S) http://www.etc...

Using these arguments the external Tomcat server running Solr throws
following error:
HTTP Status 400 - missing content stream.

What am I overlooking?

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[topbraid-users] Re: connection to remote sesame

[PaulZH]

Hi Holger,


 If you have time, an option worth trying would be to do the import of
 the ttl file from TBC or SPARQLMotion, and not via Sesame directly.

If importing via TBC, the performance seems to be OK.

The
 difference would be that it will then use Jena bnode identifiers and
 these may be easier to round-trip.

This seems to be the case. Will do further testing.

Sorry we are a bit short on time with
 SemTech preparations right now so may not be able to look into this
 issue ourselves for a while.


Understood, no problem.
However the client would like to keep, if possible, the initial
workflow, so it would be nice if you could find some time to look at
it when SemTech is over.

Paul

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[topbraid-users] Re: connection to remote sesame

[PaulZH]

Hi Holger,


On May 30, 7:24 am, Holger Knublauch hol...@topquadrant.com wrote:
 Hi Paul,

 do you know when the slowness started for you?

From the first moment already.
Is not surprising since the workflow is as follows.

Read in csv in Google Refine, clean, reconcile and export to RDF ttl.
Then import the ttl file into Sesame via the Sesame Workbench.
Connect to Sesame from TBC to do some additional editing and
constraint checking.

Could it in fact be
 related to bnodes?

Yes, that's a valid hypothesis.

If so, could you try with a model that does not use
 bnodes?

Yes, will do early next week.

Also what is the physical storage model that you interface via
Sesame (maybe the bnode handling is different on each platform)?

It is in this case a native Java store with RDF Schema.

 In
 general bnodes are rather fragile when it comes to databases.

Within the Sesame environment itself there doesn't seem to be any
issue.

Paul


 Thanks
 Holger

 On 5/29/2012 23:04, PaulZH wrote:







  Context:
  Sesame 2.6.5
  TBCME Version: 3.6.0.v20120419-1246R
  on Mac Mac OS X Lion 10.7.4 (11E53)
  with Java version 1.7.0_04
  Java(TM) SE Runtime Environment (build 1.7.0_04-b21)
  Java HotSpot(TM) 64-Bit Server VM (build 23.0-b21, mixed mode)

  All actions (writing, querying) to a remote sesame happen very slow.

  - Writing a few new triples takes 10 minutes.
  - Following query
  SELECT *
  WHERE {
       ?a a vl:School.
       ?a vcard:adr ?address.
       ?address vcard:locality ?locality.
       FILTER (?locality = Mortsel)
  }
  which is carried out in less than a second within the sesame
  workbench, takes 10 minutes in TBCME.

  One thing I notice is that errors are thrown related to blank nodes:
  null
  Warning
  Tue May 29 14:37:09 CEST 2012
  Failed to convert node: @node16tvbnmeqx27438

  java.lang.IllegalArgumentException: Not a valid (absolute) URI:
  @node16tvbnmeqx27438
     at org.openrdf.model.impl.URIImpl.setURIString(URIImpl.java:68)
     at org.openrdf.model.impl.URIImpl.init(URIImpl.java:57)
     at
  org.openrdf.model.impl.ValueFactoryImpl.createURI(ValueFactoryImpl.java:
  38)
     at org.topbraid.sesame2.mapping.Jena2Sesame.getURI(Jena2Sesame.java:
  76)
     at org.topbraid.sesame2.mapping.Jena2Sesame.getValue(Jena2Sesame.java:
  87)
     at
  org.topbraid.sesame2.graph.RepositoryGraph.graphBaseFind(RepositoryGraph.java:
  82)
     at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240)
     at
  org.topbraid.core.graph.DelegatingGraph.delegateFind(DelegatingGraph.java:
  243)
     at org.topbraid.core.graph.CachingGraph.addToCache(CachingGraph.java:
  145)
     at
  org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:
  178)
     at
  org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:
  168)
     at org.topbraid.core.graph.DelegatingGraph.find(DelegatingGraph.java:
  113)
     at org.topbraid.core.graph.BufferingGraph.find(BufferingGraph.java:
  380)
     at org.topbraid.core.graph.BufferingGraph.find(BufferingGraph.java:
  402)
     at
  com.hp.hpl.jena.graph.compose.MultiUnion.multiGraphFind(MultiUnion.java:
  187)
     at
  com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:
  166)
     at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240)
     at com.hp.hpl.jena.graph.impl.GraphBase.graphBaseFind(GraphBase.java:
  260)
     at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:257)
     at
  com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:
  378)
     at
  com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:
  383)
     at
  com.hp.hpl.jena.rdf.model.impl.ResourceImpl.listProperties(ResourceImpl.java:
  157)
     at
  org.topbraidcomposer.ui.ToolTipTexts.getToolTipText(ToolTipTexts.java:
  38)
     at org.topbraidcomposer.widgets.row.editors.AbstractEditorText
  $10.handle(AbstractEditorText.java:487)
     at
  org.topbraidcomposer.ui.text.StyledTextNavigator.updateRange(StyledTextNavigator.java:
  325)
     at
  org.topbraidcomposer.widgets.row.editors.AbstractEditorText.updateToolTipText(AbstractEditorText.java:
  484)
     at org.topbraidcomposer.widgets.row.editors.AbstractEditorText
  $3.mouseMove(AbstractEditorText.java:139)
     at
  org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:
  211)
     at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
     at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4125)
     at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1457)
     at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1480)
     at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1465)
     at org.eclipse.swt.widgets.Widget.notifyListeners(Widget.java:1270)
     at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:
  3971)
     at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3610)
     at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java

[topbraid-users] connection to remote sesame

[PaulZH]

Context:
Sesame 2.6.5
TBCME Version: 3.6.0.v20120419-1246R
on Mac Mac OS X Lion 10.7.4 (11E53)
with Java version 1.7.0_04
Java(TM) SE Runtime Environment (build 1.7.0_04-b21)
Java HotSpot(TM) 64-Bit Server VM (build 23.0-b21, mixed mode)

All actions (writing, querying) to a remote sesame happen very slow.

- Writing a few new triples takes 10 minutes.
- Following query
SELECT *
WHERE {
?a a vl:School.
?a vcard:adr ?address.
?address vcard:locality ?locality.
FILTER (?locality = Mortsel)
}
which is carried out in less than a second within the sesame
workbench, takes 10 minutes in TBCME.

One thing I notice is that errors are thrown related to blank nodes:
null
Warning
Tue May 29 14:37:09 CEST 2012
Failed to convert node: @node16tvbnmeqx27438

java.lang.IllegalArgumentException: Not a valid (absolute) URI:
@node16tvbnmeqx27438
at org.openrdf.model.impl.URIImpl.setURIString(URIImpl.java:68)
at org.openrdf.model.impl.URIImpl.init(URIImpl.java:57)
at
org.openrdf.model.impl.ValueFactoryImpl.createURI(ValueFactoryImpl.java:
38)
at org.topbraid.sesame2.mapping.Jena2Sesame.getURI(Jena2Sesame.java:
76)
at org.topbraid.sesame2.mapping.Jena2Sesame.getValue(Jena2Sesame.java:
87)
at
org.topbraid.sesame2.graph.RepositoryGraph.graphBaseFind(RepositoryGraph.java:
82)
at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240)
at
org.topbraid.core.graph.DelegatingGraph.delegateFind(DelegatingGraph.java:
243)
at org.topbraid.core.graph.CachingGraph.addToCache(CachingGraph.java:
145)
at
org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:
178)
at
org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:
168)
at org.topbraid.core.graph.DelegatingGraph.find(DelegatingGraph.java:
113)
at org.topbraid.core.graph.BufferingGraph.find(BufferingGraph.java:
380)
at org.topbraid.core.graph.BufferingGraph.find(BufferingGraph.java:
402)
at
com.hp.hpl.jena.graph.compose.MultiUnion.multiGraphFind(MultiUnion.java:
187)
at
com.hp.hpl.jena.graph.compose.MultiUnion.graphBaseFind(MultiUnion.java:
166)
at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240)
at com.hp.hpl.jena.graph.impl.GraphBase.graphBaseFind(GraphBase.java:
260)
at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:257)
at
com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:
378)
at
com.hp.hpl.jena.rdf.model.impl.ModelCom.listStatements(ModelCom.java:
383)
at
com.hp.hpl.jena.rdf.model.impl.ResourceImpl.listProperties(ResourceImpl.java:
157)
at
org.topbraidcomposer.ui.ToolTipTexts.getToolTipText(ToolTipTexts.java:
38)
at org.topbraidcomposer.widgets.row.editors.AbstractEditorText
$10.handle(AbstractEditorText.java:487)
at
org.topbraidcomposer.ui.text.StyledTextNavigator.updateRange(StyledTextNavigator.java:
325)
at
org.topbraidcomposer.widgets.row.editors.AbstractEditorText.updateToolTipText(AbstractEditorText.java:
484)
at org.topbraidcomposer.widgets.row.editors.AbstractEditorText
$3.mouseMove(AbstractEditorText.java:139)
at
org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:
211)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4125)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1457)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1480)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1465)
at org.eclipse.swt.widgets.Widget.notifyListeners(Widget.java:1270)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:
3971)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3610)
at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:
2696)
at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:2660)
at org.eclipse.ui.internal.Workbench.access$4(Workbench.java:2494)
at org.eclipse.ui.internal.Workbench$7.run(Workbench.java:674)
at
org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:
332)
at
org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:
667)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:
149)
at
org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:
123)
at
org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:
196)
at
org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:
110)
at
org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:
79)
at
org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:
344)
at

[topbraid-users] Re: TBC connected to sesame becoming unresponsive while editing anonymous nodes

[PaulZH]

Gokhan,

Yes, indeed, this is precisely the behavior I encountered.

Paul

On Mar 1, 1:53 am, Gokhan Soydan gsoy...@topquadrant.com wrote:
 Paul,

 I did further testing. TBC 3.5.4 works fine using Sesame 2.5 with
 regards to editing the anonymous nodes.

 However, when I hover around the anonymous nodes in the form, TBC
 becomes unresponsive for a while, and then produces several warning like
 Failed to convert node: @node This happens both in TBC 3.5.4
 and 3.6.0B. Was it this issue that you experienced?

 This might be a TBC-related warning, so I will look into it.

 Thanks,
 Gokhan

 On 2/28/2012 3:22 AM, PaulZH wrote:

  Hi Gokhan,

  It was with TBC 3.5.4 and Sesame 2.5.
  It is good to know that using the upcoming TBC version with Sesame 2.6
  works within acceptable timespans.

  Thanks for checking this out.

  Paul

  On Feb 28, 10:04 am, Gokhan Soydangsoy...@topquadrant.com  wrote:
  Paul,

  Sorry it took me a while to work on the file that you sent. I tried it
  in Sesame 2.6.2 (in a memory-store type repository) with TBC-ME 3.6.0B.
  It took me at most 5 - 10 seconds to edit eu:language or eu:noteLiteral
  literals inside the anonymous nodes.

  What version of Sesame did you use? I know that TBC 3.5.4 cannot run
  with Sesame version 2.6 or above.

  Gokhan

  On 2/23/2012 1:27 PM, Gokhan Soydan wrote:

  Paul,
  As of TBC 3.6.0B, we support Sesame 2.6 and above as well. Maybe you
  can try TBC 3.6.0B and see if it is more responsive with anonymous
  nodes there.
  In the meanwhile, you can send the file to us, and we can test it as
  well.
  Thanks,
  Gokhan
  On 2/23/2012 8:00 AM, PaulZH wrote:
  Context: Windows 7 32-bit
  TBCME 3.5.4
  Having a skos with some extensions thesaurus with 2.657.262 triples.
  Loaded these in Sesame.
  TBC connected to Sesame.
  Opening the file takes 50 seconds, which is much better than trying to
  open the file directly in TBC (more than 25 minutes).
  Everything works fluently except for editing anonymous nodes.
  E.g. every skos:Concept has a skos:scopeNote for every language used
  in the european union (25 scopeNotes per concept).
  Every scopeNote is anonymous with 2 properties: eu:language and
  eu:noteLiteral.
  When editing a skos Concept and changing something related to these
  anonymous nodes makes the system unresponsive for about a minute.
  This is not the case when editing other properties.
  Anything that can be done?
  If needed, I can send the file.

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[topbraid-users] TBCME 3.6 create connection for RDBMS source (using D2RQ)

[PaulZH]

Context: Mac OS 10.7.3
TBCME 3.6 beta
Trying to connect to a local mysql database.

Whatever I try I do not get passed this screen (TBCME 3.6 create
connection for RDBMS source (using D2RQ)).

First I get Load either a database or an existing model.

Once this choice been made by checking one of the radio buttons, I get
Models cannot be loaded from the database or the existing model.

And the 'next' and 'finsih' buttons stay greyed out.

What am I missing?

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[topbraid-users] Print icon within Diagram View on Mac

[PaulZH]

Context: Mac OS 10.7.3
TBCME 3.6 beta

Print icon within Diagram View (on Class) doesn't respond.

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[topbraid-users] Re: encoding again

[PaulZH]

Hi Bob,

Thanks for confirming this.
Since we are moving from a batch publishing framework to a dynamic one
using Netkernel, it is not of that importance anymore.


Paul

On Feb 22, 12:20 am, Bob DuCharme bducha...@topquadrant.com wrote:
 Hi Paul,

 First, I was glad to finally meet you in person at Berlin semtech, and I
 enjoyed your talk there.

 We have been looking into this issue. We've identified it as a bug in the
 sml:ExportToTextFile module and entered it into our Bug Tracker system. We
 are planning on fixing it but currently have no estimated date for
 completing the fix. For now, as you saw, you can count on
 sml:ExportToXMLFile to pass along the content in the UTF-8 encoding,
 although as you also saw it's not as quick as sml:ExportToTextFile because
 it validates the XML before writing it to disk.

 Bob DuCharme
 TopQuadrant

 On Mon, Feb 20, 2012 at 7:57 AM, PaulZH p...@proxml.be wrote:
  Context: TBCME Version: 3.5.4.v20120206-0955R
  MS-Windows 7

  I recently changed following SPARLMOTION script

  1) read RDF/XML (UTF-8) from file system
  2) XSLT Transform 1 to XML
  3) XSLT Transform 2 to XHTML
  4) save to file system as XML (sml:ExportToXMLFile) as {label}.html

  to

  4) save to file system as text (sml:ExportToTextFile)  as {label}.html

  This has been done due to performance reasons.
  See
 http://groups.google.com/group/topbraid-users/browse_thread/thread/9a...

  However although:
  - the XSLT contains xsl:output indent=yes encoding=UTF-8
  method=xhtml/
  - the generated XHTML contains meta http-equiv=Content-Type
  content=application/xhtml+xml; charset=utf-8/
  - the folder in which the output is generated has in the eclipse
  properties view, text file encoding UTF-8
  - the eclipse preference for html files has been set to UTF-8

  the generated HTML file is NOT UTF-8 and generates well-formdness
  errors.
   IOException-Got a character coding exception.
   To ignore these errors or to replace invalid characters
   please change in preferences the Encoding errors handling
   from REPORT to IGNORE or REPLACE.
  UTF8 - java.nio.charset.MalformedInputException [Input length = 1]

  Additional input:
  - Running the stylesheets outside TBCME generate the output as aimed.
  - replacing
      step 3 with  XSLT Transform 2 to XML (not XHTML)
      step 4 with  save to file system as text (sml:ExportToTextFile)
  as {label}.xml doesn't give the encoding issue.
  - changing in  Firefox the encoding from UTF-8 to Western (ISO-8859-1)
  gives the correct characters.

  Any idea how to get the correct encoding?

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  Vocabulary Network (EVN), TopBraid Composer,
  TopBraid Live, TopBraid Ensemble, SPARQLMotion and SPIN.
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 http://groups.google.com/group/topbraid-users?hl=en

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[topbraid-users] TBCME 3.6 beta Import Tab-Delimited Spreadsheet File

[PaulZH]

Context: Mac OS 10.7.3
TBCME 3.6 beta

Import Tab-Delimited Spreadsheet File gives:
Unhandled event loop exception
java.lang.StackOverflowError

Paul

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[topbraid-users] SPIN constraint checking changed between version 3.3 and 3.5 ?

[PaulZH]

I had for a TBCME 3.3 installation written some SPIN Constraints.

If I run these constraints (refresh and show problems) with version
3.3,  I get 1 warning.
If I click and open the related resource, the display constraint
violation warning icon indicates indeed the issue.

When I run the same constraints file with TBCME 3.5 I get 4247
warnings.
If I click a related resource of a warning, the display constraint
violation warning icon is still grayed out.
Hence I cannot make sense out of the warnings.

I checked the same in version 3.6 beta getting also the 4247 warnings.

Anything changed between versions or any other input to pinpoint the
reason of the different behavior?


Paul

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[topbraid-users] Re: SPIN constraint checking changed between version 3.3 and 3.5 ?

[PaulZH]

Hi Scott,

Thanks for this input.
I think your diagnosis is correct.
Have just run the inluded SKOS constraints with later versions and
they work as expected.

However I'm not sure how to do the migration from my existing
situation to the wished one.

I have for the moment in 3.3 a file 'constraints.n3' containing my
spin constraints which imports:
- OWRT.s2r (the content of a Sesame triple store)
- spin.ttl

I cannot delete the owl:imports spin.ttl otherwise I'm loosing my
constraints.

I created a new file
which spin:imports 'constraints.n3' and owl:imports 'OWRT.s2r' but
that doesn't make a difference.


Paul


On Feb 13, 3:49 pm, Scott Henninger shennin...@topquadrant.com
wrote:
 Paul; There have been some changes in SPIN since TBS 3.3.  You can see
 the change logs athttp://www.topquadrant.com/docs/versions/changes-3.4.0.txt
 andhttp://www.topquadrant.com/products/release_notes/v3_5.html

 The core problem seems to be that SPIN rules are being applied against
 SPIN deefinitions.  If you're using the OWL axioms with CWA (closed-
 world assumptions), I'd suggest using the Ontology Profile (go to
 Ontology Home and select Profile sub-tab) to specify that library.
 Otherwise you may try importing your rules via spin:imports, which
 will import the file just as in owl:imports, but will not run rules
 against those imported triples.

 If neither of those work, then we'd need a bit more on what the rules
 are and some examples of the warnings (screen shots?) so we can get a
 better idea of what may be happening.

 -- Scott

 On Feb 13, 7:12 am, PaulZH p...@proxml.be wrote:

  I had for a TBCME 3.3 installation written some SPIN Constraints.

  If I run these constraints (refresh and show problems) with version
  3.3,  I get 1 warning.
  If I click and open the related resource, the display constraint
  violation warning icon indicates indeed the issue.

  When I run the same constraints file with TBCME 3.5 I get 4247
  warnings.
  If I click a related resource of a warning, the display constraint
  violation warning icon is still grayed out.
  Hence I cannot make sense out of the warnings.

  I checked the same in version 3.6 beta getting also the 4247 warnings.

  Anything changed between versions or any other input to pinpoint the
  reason of the different behavior?

  Paul

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[topbraid-users] SPARQL 1.1 SUBSTR function syntax

[PaulZH]

TBCME 3.5.2

Following query
CONSTRUCT {  dcterms:date ?date.}
WHERE {
  BIND (xsd:string(now()) AS ?now)
  BIND (SUBSTR(?now,1,10) AS ?date)
}

gives error
Encountered (( at line 4, column 15. Was expecting regex.

The query works in Sesame and SPARQLer (ARQ).

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[topbraid-users] Re: SPARQL 1.1 SUBSTR function syntax

[PaulZH]

Thanks, Bob.

On Jan 10, 3:22 pm, Bob DuCharme bducha...@topquadrant.com wrote:
 Hi Paul,

 It works with ARQ 2.8.8, but not with ARQ 2.8.7, so it looks like it's one
 of the more recent SPARQL 1.1 functions to be supported there. Until
 TopBraid includes 2.8.8, fn:substring() works in your example.

 Bob

 On Tue, Jan 10, 2012 at 5:22 AM, PaulZH p...@proxml.be wrote:
  TBCME 3.5.2

  Following query
  CONSTRUCT {  dcterms:date ?date.}
  WHERE {
   BIND (xsd:string(now()) AS ?now)
   BIND (SUBSTR(?now,1,10) AS ?date)
  }

  gives error
  Encountered (( at line 4, column 15. Was expecting regex.

  The query works in Sesame and SPARQLer (ARQ).

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[topbraid-users] string interpreted as pointer

[PaulZH]

I have an instance of type :Town with skos:prefLabel Leuven.

I have a owl:DatatypeProperty named :city with rdfs:range xsd:string
(used as property within class :Address).

If I use for this property :city the string value Leuven, I get some
unexpected behavior.
Hovering over the string Leuven I get 'Type Town' and I can control
click the value to jump to the instance.



Paul

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[topbraid-users] Re: string interpreted as pointer

[PaulZH]

It is of course a feature when it concerns owl:ObjectProperties

 Is there a problem with this?
Apparently it is for users, evaluating the environment, confusing that
a pure string is also indicated as an instance of type :Town and
behaves as a pointer.


Paul



On Jan 9, 10:52 am, Holger Knublauch hol...@topquadrant.com wrote:
 Yes that's a feature.

 Holger

 On Jan 9, 2012, at 6:50 PM, PaulZH wrote:

  I have an instance of type :Town with skos:prefLabel Leuven.

  I have a owl:DatatypeProperty named :city with rdfs:range xsd:string
  (used as property within class :Address).

  If I use for this property :city the string value Leuven, I get some
  unexpected behavior.
  Hovering over the string Leuven I get 'Type Town' and I can control
  click the value to jump to the instance.

  Paul

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[topbraid-users] Re: how to model a property accepting multiple datatypes

[PaulZH]

Indeed Holger this is cleaner.

But there is also the user's perspective who doesn't always want
separate properties for several potential datatypes, certainly when
the datatypes are very close to each other such as xsd:date,
xsd:gYearMonth, xsd:Year.
In a real project in the Cultural Heritage domain where the properties
startDate and endDate of a Period/TimeFrame are not always precisely
known, the explicit change request came in to adapt the existing
metadata management system to allow this.
Looking to replace this system now, the potential alternatives should
not have the same issue.

But using SPIN constraints can help us along.
ASK WHERE {
?this :startDate ?date .
FILTER (!regex(?date, ^\\d{4}(-\\d{2}(-\\d{2})?)?$)) .
}

Another small usability issue in this area:
If I enter as value:
1986^^xsd:gYear
It is not possible to change the datatype later on to xsd:gYearMonth
(understandable because the existing value pattern doesn't fit).
But it would be easier to allow the switch and to indicate directly
the error so the user can correct it.
Now he is forced to delete the existing value and to restart or am I
missing something?


Paul


On Jan 5, 3:01 am, Holger Knublauch hol...@topquadrant.com wrote:
 I don't think we support that, and I would generally discourage such things 
 from an ontology point of view. The problem is not just that UIs will find it 
 hard to provide meaningful widgets - in your example we couldn't even display 
 a date picker. The other problem is that any query on that data will have to 
 walk through both cases, making it useless for SPARQL etc. Databases will 
 also find it hard to optimize the literals if they can't find a suitable 
 default ordering on them (to optimize FILTER and ORDER BY).

 Why don't you define two properties with individual ranges? To work with such 
 data you could then use constructs such as

 span{= COALESCE(spl:object(?subject, :published_in_date), 
 spl:object(?subject, :published_in_duration) }/span

 You could also turn the COALESCE above into a SPIN function so that it will 
 get either the first or the second property, which ever is available.

 Thanks
 Holger

 On Jan 5, 2012, at 6:17 AM, PaulZH wrote:

  How can I limit a property e.g. :published_in to or a xsd:date or a
  xsd:duration and that the corresponding field in the form accepts
  both?

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[topbraid-users] Enumerated Datatypes and forms

[PaulZH]

I created a enumerated datatype.

:target
  a   owl:DatatypeProperty ;
  rdfs:domain :External_Link ;
  rdfs:range
  [ a   rdfs:Datatype ;
owl:oneOf (KIK^^xsd:string VIOE^^xsd:string)
  ] ;
  skos:prefLabel target^^xsd:string .

When using that property then in a form, I get
Failed to add empty row
java.lang.NullPointerException

Paul

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[topbraid-users] Re: SPARQLMotion sml:ExportToXMLFile takes a lot of time

[PaulZH]

Thanks Scott,

This made my day.

On Dec 17, 7:31 pm, Scott Henninger shennin...@topquadrant.com
wrote:
 Paul; The sml:ExportToXMLFile does XML validation before writing.  Can
 you try just exporting the text file?

 -- Scott

 On Dec 17, 9:50 am, PaulZH p...@proxml.be wrote:







  I have a script in which I (sml:IterateOverSelect) iterate over
  instances.
  At the end of the iteration I do a conversion from RDF/XML to HTML
  using XSLT and save this file to the filesystem.
  The strange thing is that this saving to the filesystem takes about 2
  minutes.

  Some info from the console:
  18:28:16.642:   - Import sesame remote repository
  18:28:16.647:   - Apply OWLIM
  18:30:05.584:   - Iterate over Instances
  18:30:05.595:     - Import HTML XSLT
  18:30:05.707:     - Apply 2 Instances
  18:30:05.726:     - Apply for n3
  18:30:05.733:     - Export 2 local n3
  18:30:06.198:     - Filter n3 by construct
  18:30:06.205:     - Apply for RDF
  18:30:06.209:     - Export 2 local RDF
  18:30:06.229:     - Import RDF File
  18:30:06.259:     - Import Grit XSLT
  18:30:06.296:     - Convert Instance By Grit XSLT
  18:30:06.390:     - Convert Instance By HTML XSLT
  18:30:06.499:     - Export to HTML
  --- START SECOND ITERATION --
  18:32:40.052:     - Import HTML XSLT
  18:32:40.077:     - Apply 2 Instances
  18:32:40.086:     - Apply for n3
  18:32:40.090:     - Export 2 local n3
  18:32:40.093:     - Filter n3 by construct
  18:32:40.098:     - Apply for RDF
  18:32:40.102:     - Export 2 local RDF
  18:32:40.107:     - Import RDF File
  18:32:40.113:     - Import Grit XSLT
  18:32:40.135:     - Convert Instance By Grit XSLT
  18:32:40.196:     - Convert Instance By HTML XSLT
  18:32:40.304:     - Export to HTML
  18:34:43.369: Finished executing SPARQLMotion script.

  On the file system itself the html file appears 2 minutes after the
  rdf from which it is derived.
  Size of the generated html is 12 to 13 Kb.

  The definition of this module is:
  :ExportToHTML
        a       sml:ExportToXMLFile ;
        rdfs:label Export to HTML^^xsd:string ;
        sm:nodeX -65 ;
        sm:nodeY 1809 ;
        sml:replace true^^xsd:boolean ;
        sml:targetFilePath out/{?prefix}/{?label}.html^^xsd:string ;
        sml:xml {?html}^^rdf:XMLLiteral .

  Any suggestion why this takes so long and how to remedy this?

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[topbraid-users] Re: connecting with openrdf sesame 2.6

[PaulZH]

Gokhan,

This is great news.
Thanks for notifying me.

Paul

On Dec 16, 11:36 pm, Gokhan Soydan gsoy...@topquadrant.com wrote:
 Paul,

 We have just added Sesame 2.6.2 adapter to TopBraid Composer. We checked
 that it work both with Sesame 2.6.2 and earlier version Sesame
 repository data.

 This is scheduled to be available in TBC 3.6.0 release build (not beta).

 Gokhan

 On 11/15/2011 4:52 PM, Gokhan Soydan wrote:

  Paul,

  As Holger stated, we will internally discuss later how the we would
  have or not have support for Sesame 2.6 in the next TBC release. Most
  likely we won't support pre-2.6 and 2.6 connectors simultaneously, but
  support at least one of them.

  Gokhan

  On 11/11/2011 1:48 AM, PaulZH wrote:
  Some additional context.
  Since new versions of OWLIM come with the latest sesame built-in the
  problem isn't limited to sesame alone.

  Paul

  On Nov 11, 10:39 am, PaulZHp...@proxml.be  wrote:
  Isn't it possible to foresee two connectors:
  - pre-2.6
  - 2.6

  This should avoid the need for all users to upgrade.

  Paul

  On Nov 11, 2:37 am, Peter Ansellansell.pe...@gmail.com  wrote:

  The change was made to fix a known replicable bug, so it will be
  necessary to support binary format version 4 in the long term. The
  database upgrade may be smooth, as the fix was made to the format, and
  not to the underlying database structure as far as I can tell.
  The main new feature of Sesame 2.6.0 was SPARQL 1.1 Federated Query,
  so it may also depend on whether people want that feature. They may
  also want the new SPARQLRepository interface that was ported down from
  Alibaba into Sesame Core to support federated querying.
  In addition, I doubt that fixes for SPARQL 1.1 bugs will be backported
  to the Sesame 2.5 series, but it is possible.
 http://www.openrdf.org/issues/browse/SES-741
 http://www.openrdf.org/issues/browse/SES-832
  Cheers,
  Peter
  On 11 November 2011 11:06, Holger
  Knublauchhol...@topquadrant.com  wrote:
  Thanks for the info. I guess we need further internal discussions
  as to whether we want (and can afford) to upgrade to Sesame 2.6
  before we can promise any change for 3.6. For example it would
  force all existing users to upgrade their databases.
  Holger
  On Nov 11, 2011, at 8:52 AM, Peter Ansell wrote:
  There was a post like this on the Sesame mailing list recently [1].
  The Sesame Binary RDF format changed between 2.5 and 2.6 [2].
  HTH,
  Peter
 http://sourceforge.net/mailarchive/forum.php?thread_name=4EA7086D.804...

 http://www.openrdf.org/issues/browse/SES-852
  On 11 November 2011 07:29, Bob
  Ducharmebducha...@topquadrant.com  wrote:
  Paul,
  One of our engineers has confirmed that TopBraid 3.5.2 works
  properly with
  Sesame 2.5.1, and he got the same error that you did when he
  tried it with
  Sesame 2.6. I have entered a bug report to ensure that TopBraid
  3.6 works
  properly with Sesame 2.6.
  Bob
  -Original Message-
  From: topbraid-users@googlegroups.com
  [mailto:topbraid-users@googlegroups.com] On Behalf Of PaulZH
  Sent: Thursday, November 10, 2011 8:27 AM
  To: TopBraid Suite Users
  Subject: [topbraid-users] connecting with openrdf sesame 2.6
  Dear,
  When trying to open a Sesame2 Repository Connection with a sesame
  updated to version 2.6 I get:
  Reason:
  org.openrdf.repository.RepositoryException: Malformed query result
  from server
          at
  org.openrdf.http.client.HTTPClient.getTupleQueryResult(HTTPClient.java:

  971)
          at
  org.openrdf.http.client.HTTPClient.getRepositoryList(HTTPClient.java:

  371)
          at
  org.openrdf.http.client.HTTPClient.getRepositoryList(HTTPClient.java:

  353)
          at
  org.topbraid.sesame2.SesameUtil.getRepositoryNames(SesameUtil.java:
  85)
          at
  org.topbraidcomposer.sesame2.remote.AbstractSesameRemoteWizardPage.handleFet

  ch(AbstractSesameRemoteWizardPage.java:
  146)
          at
  org.topbraidcomposer.sesame2.remote.AbstractSesameRemoteWizardPage.access

  $0(AbstractSesameRemoteWizardPage.java:142)
          at
  org.topbraidcomposer.sesame2.remote.AbstractSesameRemoteWizardPage
  $1.widgetSelected(AbstractSesameRemoteWizardPage.java:100)
          at
  org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:

  234)
          at
  org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
          at
  org.eclipse.swt.widgets.Display.sendEvent(Display.java:3776)
          at
  org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1367)
          at
  org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1390)
          at
  org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1375)
          at
  org.eclipse.swt.widgets.Widget.notifyListeners(Widget.java:1187)
          at
  org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:
  3622)
          at
  org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3277)
          at
  org.eclipse.jface.window.Window.runEventLoop(Window.java:825

[topbraid-users] Re: Sesame queries

[PaulZH]

Hi Bob,

What I was asking is the other way around.
Keep the same query as in Sesame and configure the TBC - Sesame
connection so I can get the same result. I have the impression that if
you make a connection to a Sesame store you get a connection to the
default graph (triples with no context) or to the triples of the graph
indicated during setup but never to the whole repository.

Your suggestion
SELECT (count(?a) as ?total)
WHERE
{
  { ?a a skos:Concept. }
  UNION
  { GRAPH http://www.erfgoedbank.be/termsuggesties {?a a
skos:Concept. }}

}

gives in TBC the same result as
SELECT (count(?a) as ?total)
WHERE {
{?a a skos:Concept.}


I have some further data with a slightly bigger database after a demo:
In Sesame
SELECT (count(?a) as ?total)
WHERE {?a a
skos:Concept}
17

SELECT (count(?a) as ?total)
FROM http://www.erfgoedbank.be/termsuggesties
WHERE {?a a
skos:Concept}
9

SELECT (count(?a) as ?total)
FROM NAMED http://www.erfgoedbank.be/termsuggesties
WHERE {
GRAPH http://www.erfgoedbank.be/termsuggesties
{?a a
skos:Concept.}}
9

IN TBC connected to the same Sesame store with no graph indicated
SELECT (count(?a) as ?total)
WHERE {?a a
skos:Concept}
9

SELECT (count(?a) as ?total)
FROM http://www.erfgoedbank.be/termsuggesties
WHERE {?a a
skos:Concept}
Could not execute query java.lang.Nullpointer.exception

SELECT (count(?a) as ?total)
FROM NAMED http://www.erfgoedbank.be/termsuggesties
WHERE {
GRAPH http://www.erfgoedbank.be/termsuggesties
{?a a
skos:Concept.}}
0

I'm slightly puzzled.


Paul



On Dec 14, 7:35 pm, Bob Ducharme bducha...@topquadrant.com wrote:
 Paul,

 I may be misunderstanding your question, but I think that the best way from
 TBC to count the concepts in the http://www.erfgoedbank.be/termsuggesties
 graph and the ones that are not in an explicit graph together would be to
 just say this explicitly in the query with a UNION, like this:

 SELECT (count(?a) as ?total)
 WHERE
 {
   { ?a a skos:Concept. }
   UNION
   { GRAPH http://www.erfgoedbank.be/termsuggesties {?a a skos:Concept. }}

 }

 Bob

 -Original Message-
 From: topbraid-users@googlegroups.com

 [mailto:topbraid-users@googlegroups.com] On Behalf Of PaulZH
 Sent: Wednesday, December 14, 2011 11:17 AM
 To: TopBraid Suite Users
 Subject: [topbraid-users] Sesame queries

 I have a trial Sesame triple store.

 If I query this store in Sesame
 SELECT (count(?a) as ?total)
 WHERE
 {?a a skos:Concept.}

 I get 12.

 SELECT (count(?a) as ?total)
 WHERE {GRAPH http://www.erfgoedbank.be/termsuggesties
 {?a a skos:Concept.}}

 I get 7.

 Now moving to TBC and connecting to this same triple store, I leave
 the graph name (optional) parameter blank.

 If I query from within TBC
 SELECT (count(?a) as ?total)
 WHERE
 {?a a skos:Concept.}

 I get 5, which can be explained as the Concepts without an explicit
 context (graph).

 Connecting to this same triple store, with graph name (optional)
 parameter http://www.erfgoedbank.be/termsuggesties

 SELECT (count(?a) as ?total)
 WHERE {
 {?a a skos:Concept.}

 I get 7 as expected.

 My question is if I can connect to this Sesame store in such a way
 that I get 12 when using
 SELECT (count(?a) as ?total)
 WHERE
 {?a a skos:Concept.}

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 athttp://groups.google.com/group/topbraid-users?hl=en

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[topbraid-users] Sesame queries

[PaulZH]

I have a trial Sesame triple store.

If I query this store in Sesame
SELECT (count(?a) as ?total)
WHERE
{?a a skos:Concept.}

I get 12.

SELECT (count(?a) as ?total)
WHERE {GRAPH http://www.erfgoedbank.be/termsuggesties
{?a a skos:Concept.}}

I get 7.

Now moving to TBC and connecting to this same triple store, I leave
the graph name (optional) parameter blank.

If I query from within TBC
SELECT (count(?a) as ?total)
WHERE
{?a a skos:Concept.}

I get 5, which can be explained as the Concepts without an explicit
context (graph).

Connecting to this same triple store, with graph name (optional)
parameter http://www.erfgoedbank.be/termsuggesties

SELECT (count(?a) as ?total)
WHERE {
{?a a skos:Concept.}

I get 7 as expected.

My question is if I can connect to this Sesame store in such a way
that I get 12 when using
SELECT (count(?a) as ?total)
WHERE
{?a a skos:Concept.}


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[topbraid-users] Re: minor problem with images

[PaulZH]

Thanks Scott,

It was indeed as simple as that.

Paul

On Dec 9, 6:01 pm, Scott Henninger shennin...@topquadrant.com wrote:
 Paul; Given that Composer cannot find the file and it is available via
 a browser, the most likely issue is internal proxy settings.  To set
 these, see Preferences  General  Network Connections.

 -- Scott

 On Dec 9, 9:40 am, PaulZH p...@proxml.be wrote:

  Version: TBCME 3.5.2.v20110828-2200R on Mac OSX 10.7.2
  using the example kennedys.rdf
  the kennedys:photo field gives after clicking the +
  cannot open image: java.io.FileNotFoundException 
  :http://www.topbraidcomposer.org/demos/kennedys/images/204px-John_F._K...
  while this same url resolves seamlessly in a web browser.

  Paul

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[topbraid-users] advice concerning memory configuration

[PaulZH]

Context Mac Mac OS X 10.7.2 (11C74) 4 GB memory
TBCME 3.3

During the running of a Sparqlmotion script that iterates over all
instances in a knowledge base to export all related triples as html,
rdf, n3 I get after a few hours

TBCME not responding
2.048 Threads
1,38 GB Real Memory
28,65 GB Virtual Memory

This is the ini file on Mac
-startup
../../../plugins/
org.eclipse.equinox.launcher_1.0.201.R35x_v20090715.jar
--launcher.library
../../../plugins/
org.eclipse.equinox.launcher.cocoa.macosx.x86_64_1.0.1.R35x_v20090707
-showsplash
org.topbraidcomposer.maestro.splash
-vmargs
-Xms512m
-Xmx1024m
-XX:MaxPermSize=256m
-XX:PermSize=64m
-XstartOnFirstThread
-Dorg.eclipse.swt.internal.carbon.smallFonts

Any suggestion to better tune this?

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[topbraid-users] minor problem with images

[PaulZH]

Version: TBCME 3.5.2.v20110828-2200R on Mac OSX 10.7.2
using the example kennedys.rdf
the kennedys:photo field gives after clicking the +
cannot open image: java.io.FileNotFoundException :
http://www.topbraidcomposer.org/demos/kennedys/images/204px-John_F._Kennedy,_White_House_color_photo_portrait.jpg
while this same url resolves seamlessly in a web browser.


Paul

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[topbraid-users] Re: connecting with openrdf sesame 2.6

[PaulZH]

Isn't it possible to foresee two connectors:
- pre-2.6
- 2.6

This should avoid the need for all users to upgrade.

Paul

On Nov 11, 2:37 am, Peter Ansell ansell.pe...@gmail.com wrote:
 The change was made to fix a known replicable bug, so it will be
 necessary to support binary format version 4 in the long term. The
 database upgrade may be smooth, as the fix was made to the format, and
 not to the underlying database structure as far as I can tell.

 The main new feature of Sesame 2.6.0 was SPARQL 1.1 Federated Query,
 so it may also depend on whether people want that feature. They may
 also want the new SPARQLRepository interface that was ported down from
 Alibaba into Sesame Core to support federated querying.

 In addition, I doubt that fixes for SPARQL 1.1 bugs will be backported
 to the Sesame 2.5 series, but it is possible.

 http://www.openrdf.org/issues/browse/SES-741

 http://www.openrdf.org/issues/browse/SES-832

 Cheers,

 Peter

 On 11 November 2011 11:06, Holger Knublauch hol...@topquadrant.com wrote:

  Thanks for the info. I guess we need further internal discussions as to 
  whether we want (and can afford) to upgrade to Sesame 2.6 before we can 
  promise any change for 3.6. For example it would force all existing users 
  to upgrade their databases.

  Holger

  On Nov 11, 2011, at 8:52 AM, Peter Ansell wrote:

  There was a post like this on the Sesame mailing list recently [1].
  The Sesame Binary RDF format changed between 2.5 and 2.6 [2].

  HTH,

  Peter

 http://sourceforge.net/mailarchive/forum.php?thread_name=4EA7086D.804...

 http://www.openrdf.org/issues/browse/SES-852

  On 11 November 2011 07:29, Bob Ducharme bducha...@topquadrant.com wrote:
  Paul,

  One of our engineers has confirmed that TopBraid 3.5.2 works properly with
  Sesame 2.5.1, and he got the same error that you did when he tried it with
  Sesame 2.6. I have entered a bug report to ensure that TopBraid 3.6 works
  properly with Sesame 2.6.

  Bob

  -Original Message-
  From: topbraid-users@googlegroups.com
  [mailto:topbraid-users@googlegroups.com] On Behalf Of PaulZH
  Sent: Thursday, November 10, 2011 8:27 AM
  To: TopBraid Suite Users
  Subject: [topbraid-users] connecting with openrdf sesame 2.6

  Dear,

  When trying to open a Sesame2 Repository Connection with a sesame
  updated to version 2.6 I get:

  Reason:
  org.openrdf.repository.RepositoryException: Malformed query result
  from server
         at
  org.openrdf.http.client.HTTPClient.getTupleQueryResult(HTTPClient.java:
  971)
         at
  org.openrdf.http.client.HTTPClient.getRepositoryList(HTTPClient.java:
  371)
         at
  org.openrdf.http.client.HTTPClient.getRepositoryList(HTTPClient.java:
  353)
         at
  org.topbraid.sesame2.SesameUtil.getRepositoryNames(SesameUtil.java:
  85)
         at
  org.topbraidcomposer.sesame2.remote.AbstractSesameRemoteWizardPage.handleFet
  ch(AbstractSesameRemoteWizardPage.java:
  146)
         at
  org.topbraidcomposer.sesame2.remote.AbstractSesameRemoteWizardPage.access
  $0(AbstractSesameRemoteWizardPage.java:142)
         at
  org.topbraidcomposer.sesame2.remote.AbstractSesameRemoteWizardPage
  $1.widgetSelected(AbstractSesameRemoteWizardPage.java:100)
         at
  org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:
  234)
         at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
         at org.eclipse.swt.widgets.Display.sendEvent(Display.java:3776)
         at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1367)
         at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1390)
         at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1375)
         at org.eclipse.swt.widgets.Widget.notifyListeners(Widget.java:1187)
         at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:
  3622)
         at
  org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3277)
         at org.eclipse.jface.window.Window.runEventLoop(Window.java:825)
         at org.eclipse.jface.window.Window.open(Window.java:801)
         at
  org.eclipse.ui.internal.actions.NewWizardShortcutAction.run(NewWizardShortcu
  tAction.java:
  135)
         at org.eclipse.jface.action.Action.runWithEvent(Action.java:498)
         at
  org.eclipse.jface.action.ActionContributionItem.handleWidgetSelection(Action
  ContributionItem.java:
  584)
         at org.eclipse.jface.action.ActionContributionItem.access
  $2(ActionContributionItem.java:501)
         at org.eclipse.jface.action.ActionContributionItem
  $5.handleEvent(ActionContributionItem.java:411)
         at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
         at org.eclipse.swt.widgets.Display.sendEvent(Display.java:3776)
         at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1367)
         at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1390)
         at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1375

[topbraid-users] Re: connecting with openrdf sesame 2.6

[PaulZH]

Some additional context.
Since new versions of OWLIM come with the latest sesame built-in the
problem isn't limited to sesame alone.

Paul

On Nov 11, 10:39 am, PaulZH p...@proxml.be wrote:
 Isn't it possible to foresee two connectors:
 - pre-2.6
 - 2.6

 This should avoid the need for all users to upgrade.

 Paul

 On Nov 11, 2:37 am, Peter Ansell ansell.pe...@gmail.com wrote:

  The change was made to fix a known replicable bug, so it will be
  necessary to support binary format version 4 in the long term. The
  database upgrade may be smooth, as the fix was made to the format, and
  not to the underlying database structure as far as I can tell.

  The main new feature of Sesame 2.6.0 was SPARQL 1.1 Federated Query,
  so it may also depend on whether people want that feature. They may
  also want the new SPARQLRepository interface that was ported down from
  Alibaba into Sesame Core to support federated querying.

  In addition, I doubt that fixes for SPARQL 1.1 bugs will be backported
  to the Sesame 2.5 series, but it is possible.

 http://www.openrdf.org/issues/browse/SES-741

 http://www.openrdf.org/issues/browse/SES-832

  Cheers,

  Peter

  On 11 November 2011 11:06, Holger Knublauch hol...@topquadrant.com wrote:

   Thanks for the info. I guess we need further internal discussions as to 
   whether we want (and can afford) to upgrade to Sesame 2.6 before we can 
   promise any change for 3.6. For example it would force all existing users 
   to upgrade their databases.

   Holger

   On Nov 11, 2011, at 8:52 AM, Peter Ansell wrote:

   There was a post like this on the Sesame mailing list recently [1].
   The Sesame Binary RDF format changed between 2.5 and 2.6 [2].

   HTH,

   Peter

  http://sourceforge.net/mailarchive/forum.php?thread_name=4EA7086D.804...

  http://www.openrdf.org/issues/browse/SES-852

   On 11 November 2011 07:29, Bob Ducharme bducha...@topquadrant.com 
   wrote:
   Paul,

   One of our engineers has confirmed that TopBraid 3.5.2 works properly 
   with
   Sesame 2.5.1, and he got the same error that you did when he tried it 
   with
   Sesame 2.6. I have entered a bug report to ensure that TopBraid 3.6 
   works
   properly with Sesame 2.6.

   Bob

   -Original Message-
   From: topbraid-users@googlegroups.com
   [mailto:topbraid-users@googlegroups.com] On Behalf Of PaulZH
   Sent: Thursday, November 10, 2011 8:27 AM
   To: TopBraid Suite Users
   Subject: [topbraid-users] connecting with openrdf sesame 2.6

   Dear,

   When trying to open a Sesame2 Repository Connection with a sesame
   updated to version 2.6 I get:

   Reason:
   org.openrdf.repository.RepositoryException: Malformed query result
   from server
          at
   org.openrdf.http.client.HTTPClient.getTupleQueryResult(HTTPClient.java:
   971)
          at
   org.openrdf.http.client.HTTPClient.getRepositoryList(HTTPClient.java:
   371)
          at
   org.openrdf.http.client.HTTPClient.getRepositoryList(HTTPClient.java:
   353)
          at
   org.topbraid.sesame2.SesameUtil.getRepositoryNames(SesameUtil.java:
   85)
          at
   org.topbraidcomposer.sesame2.remote.AbstractSesameRemoteWizardPage.handleFet
   ch(AbstractSesameRemoteWizardPage.java:
   146)
          at
   org.topbraidcomposer.sesame2.remote.AbstractSesameRemoteWizardPage.access
   $0(AbstractSesameRemoteWizardPage.java:142)
          at
   org.topbraidcomposer.sesame2.remote.AbstractSesameRemoteWizardPage
   $1.widgetSelected(AbstractSesameRemoteWizardPage.java:100)
          at
   org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:
   234)
          at 
   org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
          at org.eclipse.swt.widgets.Display.sendEvent(Display.java:3776)
          at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1367)
          at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1390)
          at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1375)
          at 
   org.eclipse.swt.widgets.Widget.notifyListeners(Widget.java:1187)
          at 
   org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:
   3622)
          at
   org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3277)
          at org.eclipse.jface.window.Window.runEventLoop(Window.java:825)
          at org.eclipse.jface.window.Window.open(Window.java:801)
          at
   org.eclipse.ui.internal.actions.NewWizardShortcutAction.run(NewWizardShortcu
   tAction.java:
   135)
          at org.eclipse.jface.action.Action.runWithEvent(Action.java:498)
          at
   org.eclipse.jface.action.ActionContributionItem.handleWidgetSelection(Action
   ContributionItem.java:
   584)
          at org.eclipse.jface.action.ActionContributionItem.access
   $2(ActionContributionItem.java:501)
          at org.eclipse.jface.action.ActionContributionItem
   $5.handleEvent(ActionContributionItem.java:411)
          at 
   org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84

[topbraid-users] error in Topbraid EVN

[PaulZH]

EVN Home - Choose Vocab - View Change History - submit any -
getting results

In window Find Changes Result
Clicking on an entry (row) in the Matching Changes table.
The Details of Change table appears but with no added or deleted
triples and following error appearing in TBCME  (Version:
3.5.2.v20110828-2200R)

An internal error has been reported by the UISPIN engine of TopBraid
Live.  Please contact your administrator with a copy of the error
message below.

java.lang.UnsupportedOperationException: test3^^http://www.w3.org/
2001/XMLSchema#string is not a blank node
at com.hp.hpl.jena.graph.Node.getBlankNodeId(Node.java:137)
at com.hp.hpl.jena.graph.Node.getBlankNodeLabel(Node.java:144)
at
org.topbraid.sesame2.mapping.Jena2Sesame.getBNodeLabel(Jena2Sesame.java:
35)
at org.topbraid.sesame2.mapping.Jena2Sesame.getBNode(Jena2Sesame.java:
29)
at
org.topbraid.sesame2.mapping.Jena2Sesame.getResource(Jena2Sesame.java:
69)
at
org.topbraid.sesame2.graph.RepositoryGraph.graphBaseFind(RepositoryGraph.java:
80)
at com.hp.hpl.jena.graph.impl.GraphBase.find(GraphBase.java:240)
at
org.topbraid.core.graph.DelegatingGraph.delegateFind(DelegatingGraph.java:
235)
at org.topbraid.core.graph.CachingGraph.addToCache(CachingGraph.java:
138)
at
org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:
180)
at
org.topbraid.core.graph.AbstractCachingGraph.find(AbstractCachingGraph.java:
170)
at com.hp.hpl.jena.sparql.engine.iterator.QueryIterTriplePattern
$TripleMapper.init(QueryIterTriplePattern.java:67)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterTriplePattern.nextStage(QueryIterTriplePattern.java:
41)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:
91)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:
52)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
66)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:
84)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:
52)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
66)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:
84)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:
52)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
66)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterBlockTriples.hasNextBinding(QueryIterBlockTriples.java:
53)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
66)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterProcessBinding.hasNextBinding(QueryIterProcessBinding.java:
48)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
66)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIterConvert.hasNextBinding(QueryIterConvert.java:
49)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
66)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIteratorWrapper.java:
28)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
66)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIteratorWrapper.java:
28)
at
com.hp.hpl.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
66)
at
com.hp.hpl.jena.sparql.engine.ResultSetStream.hasNext(ResultSetStream.java:
57)
at
org.topbraid.spin.swp.internal.sprn.SPRNTable.init(SPRNTable.java:
27)
at
org.topbraid.spin.swp.internal.sprn.SPRNTables.register(SPRNTables.java:
51)
at org.topbraid.spin.swp.engine.SWPEngine.addSPRTable(SWPEngine.java:
256)
at
org.topbraid.spin.swp.engine.SWPEngine.addQueryResult(SWPEngine.java:
356)
at
org.topbraid.spin.swp.engine.SWPEngine.evaluateQueryArguments(SWPEngine.java:
501)
at
org.topbraid.spin.swp.engine.SWPEngine.evaluateArguments(SWPEngine.java:
448)
at org.topbraid.spin.swp.engine.SWPEngine.createNodes(SWPEngine.java:
294)
at
org.topbraid.spin.swp.engine.SWPEngine.createNodesFromPrototype(SWPEngine.java:
392)
at org.topbraid.spin.swp.engine.SWPEngine.createNodes(SWPEngine.java:
309)
at org.topbraid.spin.swp.engine.SWPEngine.createNodes(SWPEngine.java:
283)
at org.topbraid.spin.swp.engine.SWPEngine.run(SWPEngine.java:731)
at org.topbraid.spin.swp.engine.XMLEngine.run(XMLEngine.java:78)
at

[topbraid-users] Re: SPARQL query: Export results to file

[PaulZH]

Hi Scott,

I managed to bring the inference time back to about 1 minute by using
the TopSPIN engine in single pass mode.
It would be even better if I could indicate GUI-wise subsets of rules
to run (hint, hint, feature request).

Paul

On Nov 3, 3:59 am, Scott Henninger shennin...@topquadrant.com wrote:
 Paul; Bob pointed out that I mis-spoke on this part:

  If you want the data output in
  SPARQL result form, then there isn't a direct way to do this.

 In fact there is a direct way to do this using a
 sml:SerializeSPARQLResults module followed by a sml:ExportToTextFile
 module. That seems important.  Thanks Bob!

 Holger's advice on query efficiency can address the issue of scripts
 running longer seems to be useful as well, although the phrase
 ...using inferencing which takes a lot of time... when talking about
 OWL is fairly tautological.

 Paul, between the two of these, would that get you to a more
 comfortable point?

 -- Scott

 On Oct 31, 6:15 pm, Holger Knublauch hol...@topquadrant.com wrote:

  On Oct 31, 2011, at 10:59 PM, PaulZH wrote:

   TBCME 3.5.2.v20110828-2200R on Mac OSX 10.7.2

   I do a SPARQL query using inferencing which takes a lot of time.
   I do get the wished result in the results pane of the SPARQL View.
   When I ask then to Export the results to file ... the query restarts,
   taking the same long time as previously, to finally get at the save
   as ... widget.

   Is there no way to serialize the result one does already have to the
   file system?

  No currently this isn't possible in TBC. The issue is that the 
  implementation of this serialization starts with a Jena ResultSet, and 
  those ResultSets are already consumed to exhaustion when printed on the 
  screen, so I need to let it start from the beginning again. Another problem 
  is that the SPARQL view in TBC may not display all results, depending on 
  the preferences.

  The best thing you can do right now is to check whether you can optimize 
  performance of your queries. A common mistake is that SPARQL queries are 
  executed from the inside to the outside, e.g. UNION, GRAPH, sub-queries etc 
  are executed first, without taking the variable bindings of the surrounding 
  blocks into account. This may cause significantly different performance 
  numbers. See

          
  http://www.mail-archive.com/jena-us...@incubator.apache.org/msg01778.html

  Holger

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[topbraid-users] SPARQL query: Export results to file

[PaulZH]

TBCME 3.5.2.v20110828-2200R on Mac OSX 10.7.2

I do a SPARQL query using inferencing which takes a lot of time.
I do get the wished result in the results pane of the SPARQL View.
When I ask then to Export the results to file ... the query restarts,
taking the same long time as previously, to finally get at the save
as ... widget.

Is there no way to serialize the result one does already have to the
file system?


Paul

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[topbraid-users] setup teamwork changes repository

[PaulZH]

Context.
Working on a POC:
- where a few clients using TBCME heavily to talk to a OWLIM-SE within
the OpenRDF Sesame Framework (up and running)
- where web clients do very occasionaly SPARQL updates to the same
OWLIM-SE  (up and running)

It would be nice to have some global change tracking in place.

I do find documentation on setting up the teamwork changes repository
within the context of EVN and using EVN, but I wondered if this could
also be used in a scenario not using EVN or Live as described above.

If yes, is this documented somewhere?


Regards,


Paul

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[topbraid-users] Re: Explore/import this namespace

[PaulZH]

Scott,

Apologies for not having been more precise.

The context is TBCME 3.5.2.v20110828-2200R on Mac OS X Lion 10.7.1
(11B26).
Being in the Form pane of a resource.

Having a property dct:coverage with value http://sws.geonames.org/
3128760/.
At the end of the field there is a button to get to the available
actions of which ''explore/import this namespace is one.
Choosing this leads to the Java error.

I do'nt have difficulties at all when trying to retrieve these data
with other tools:
e.g.
curl -H Accept:application/rdf+xml --location http://sws.geonames.org/3128760/
gives me the rdf;
using the REST Client for Firefox gives me the rdf;
clicking the link in the forum, as you did, returns the HTML
rendition.

Paul

On Sep 9, 4:28 pm, Scott Henninger shennin...@topquadrant.com wrote:
 Specifically, if I click on the link in your post on theGoogle forum
 Web page, I always get a Error: the free servers are currently
 overloaded with requests. message.

 -- Scott

 On Sep 9, 9:27 am, Scott Henninger shennin...@topquadrant.com wrote:

  Hello Paul; What exactly are you doing when you say Asking then to
  explore/import this namespace. Asking what? How?  Somewhere in
  TopBraid Composer or TopBraid Live I expect?

  When I try that address, I get a server too busy error about half of
  the time.

  -- Scott

  On Sep 9, 7:55 am, PaulZH p...@proxml.be wrote:

   Having in the form interface http://sws.geonames.org/1726705/ as
   value.

   Asking then to explore/import this namespace.

   Operation failed.

   Reason:
   java.io.IOException: Failed to load:http://sws.geonames.org/1726705/
           at
   org.topbraid.core.registry.URLGraphSource.openInputStream(URLGraphSource.java:
   55)
           at 
   org.topbraid.core.registry.GraphSource.loadModel(GraphSource.java:
   155)
           at
   org.topbraid.core.registry.GraphSource.loadPhysicalSource(GraphSource.java:
   132)
           at 
   org.topbraid.core.registry.GraphSource.loadGraph(GraphSource.java:
   90)
           at org.topbraid.core.io.IO.load(IO.java:265)
           at org.topbraid.core.io.IO.load(IO.java:568)
           at org.topbraid.core.io.IO.load(IO.java:205)
           at org.topbraidcomposer.navigation.imports.ImportsView
   $1.run(ImportsView.java:107)
           at 
   org.topbraidcomposer.core.util.ThreadUtil$1$1.run(ThreadUtil.java:
   64)
           at java.lang.Thread.run(Thread.java:680)
   Caused by: java.net.ProtocolException: Server redirected too many
   times (20)
           at
   sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection
   1446)
           at org.topbraid.core.io.TBIOUtil.openURL(TBIOUtil.java:108)
           at
   org.topbraid.core.registry.URLGraphSource.openInputStream(URLGraphSource.java:
   52)
           ... 9 more

   Getting this error due to too many redirects ?

   Is there a way to influence this?
   With other http clients I'm able to retrieve the rdf 
   athttp://sws.geonames.org/1726705/

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[topbraid-users] Re: Edit Links to DBPedia ...

[PaulZH]

Hi Holger,

I discovered what causes the behaviour.
It has to do with the characters after the # or / in the URI.

If my URI is http://www.rubenianum.be/person/2195 (only digits) -
error
If I change the URI into http://www.rubenianum.be/person/A2195 - it
works.


Paul

On Sep 5, 2:43 am, Holger Knublauch hol...@topquadrant.com wrote:
 Hi Paul,

 do you have a full Java stack trace for details? I have tried the following 
 (with 3.5.1 which should be identical to 3.5.2 in this respect): I opened the 
 kennedys ontology, then added an rdfs:label to Alfred Tucker, then went to 
 Resource  Link to DBPedia resource... where I clicked on the resource and 
 then the arrow down. This displays his dbpedia page, and now I know that 
 Alfred Tucker was the Bishop of Uganda until 1911 :)

 Thanks for clarification,
 Holger

 On Sep 5, 2011, at 1:21 AM, PaulZH wrote:

  Software: TBCME Version: 3.5.2.v20110828-2200R
  OS: Mac OSX Lion 10.7.1

  When trying to find a resource on DBPedia I get:
  Error:
  Java.lang.StringIndexOutOfBoundsException: String index out of range:0

  The resource has the property rdfs:label filled in.

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[topbraid-users] Edit Links to DBPedia ...

[PaulZH]

Software: TBCME Version: 3.5.2.v20110828-2200R
OS: Mac OSX Lion 10.7.1

When trying to find a resource on DBPedia I get:
Error:
Java.lang.StringIndexOutOfBoundsException: String index out of range:0

The resource has the property rdfs:label filled in.

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[topbraid-users] Re: 'add existing' window in the TBC forms interface

[PaulZH]

Indeed. Thanks.

I knew it was something obvious but couldn't remember/find what it
was.

Anyhow, by getting it in time for the demo it went very well.
Probably to be continued.

Paul

On Sep 1, 1:03 am, Holger Knublauch hol...@topquadrant.com wrote:
 Hi Paul,

 this seems to work for me, assuming the human-readable labels option is 
 activated in the tool bar. See screenshot (I added that particular rdfs:label 
 beforehand; the classes on the left don't define an rdfs:label (time to 
 delete the geotravel example after so many years)).

  Screen shot 2011-09-01 at 9.01.06 AM.png
 54KViewDownload



 Regards,
 Holger

 On Sep 1, 2011, at 5:03 AM, PaulZH wrote:

  Is there a way to get in the right panel of this window the rdfs:label
  instead of the name?

  Now I get a very long list of non human-readable names e.g.
  place:crab.nisid.71002 making it impossible to find the needed one.

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[topbraid-users] RDFex

[PaulZH]

Hi,

I get an error message when trying to access 
http://rdfex.org/foaf/Person,firstName

In the same blog entry 
http://composing-the-semantic-web.blogspot.com/2009/10/rdfex-partial-ontology-imports.html
is stated
The upcoming release of the TopBraid platform 3.2 also has native
support for those rdfex imports, so that the system can do this
extraction from local copies instead of having to go to the web. 

I have been searching the documentation but I was not able to find any
info on it.

Paul

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