[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
Thanks a lot! (My heroes) FYI both Matlab and Google Earth installed zlib with no gzopen64 in March on my Ibex system ... Uh, Could this about a build flag in zlib1.2.3 (-D_LARGEFILE64_SOURCE=1)? (Both Matlab and Google Earth's versions are 1.2.3.3) -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
Copying a good copy from /usr/lib over the one in /usr/local/lib worked for me. I definitely installed a rogue zlib. Thanks everyone -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
I had the same problem running OpenERP seerver 4.3 on ubuntu server 8.04. Error message when starting openerp server was Traceback (most recent call last): File tinyerp-server.py, line 68, in module netsvc.init_logger() File /home/miran/tinyERP-server-4.3/bin/netsvc.py, line 144, in init_logger from tools import config File /home/miran/tinyERP-server-4.3/bin/tools/__init__.py, line 30, in module from convert import * File /home/miran/tinyERP-server-4.3/bin/tools/convert.py, line 43, in module from lxml import etree ImportError: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 After googling a bit I found out that the problem is due to libz library and I located two versions of that library and couple of links: /usr/lib/libz.so.1 /usr/lib/libz.so.1.2.3.3 (good one) /usr/local/lib/libz.so /usr/local/lib/libz.so.1 /usr/local/lib/libz.so.1.2.3 (not containing gzopen64) - which I tested with objdump -T /usr/local/lib/libz.so.1.2.3 | grep gzopen64 so I substituted the one in /usr/local/lib with the one form /usr/lib/ and everything worked... I don't actually know which package brought the faulty libz to the system... Hope this helps... take care Miran -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
I'm using (k)ubuntu 8.04 an I get the same problem in firefox: /usr/lib/firefox-3.0.1/firefox: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 Any ideas? -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
If this error is encountered while trying to run MonoDevelop (1.0 on my machine), all that needs to be done is to replace the file libz.so.1.2.1 (in /home/dimitar/mono-1.9/lib/) with libz.so.1.2.3.3 (from /usr/lib). -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
Sorry about the /home/dimitar/mono-1.9/lib/ path, that's the path on my machine :). By this path I meant the path where you installed Mono to/lib. -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
I have the same king of problem when compiling an app using a library linked to the symbol gzopen. I am using ubuntu 7.10 gutsy and I tried reinstalling zlib1g and zlib1g-dev, libxml2, xsltproc (which is used by the gimp and linked to the former symbol). Here are two compilation linking of two different app : first one is a wxwidgets one (very simple, just a window without buttons, etc.. just to track the error) g++ -o simple `wx-config --libs` ./simple.o main.o /usr/bin/../lib/libxml2.so.2: undefined reference to `gzopen64' collect2: ld a retourné 1 code d'état d'exécution make: *** [all] Erreur 1 Then The Gimp compilation : export LANG=C make /usr/bin/xsltproc: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 strings /usr/lib/libxml2.so.2.6.30 |grep gzopen64 gzopen64 objdump -T /usr/lib/libz.so.1 | grep gzopen64 4040 gDF .text 001b Basegzopen64 ls -l /usr/lib/libxml2* -rw-r--r-- 1 root root 1441704 2007-10-05 04:08 /usr/lib/libxml2.a -rw-r--r-- 1 root root 804 2007-10-05 04:08 /usr/lib/libxml2.la lrwxrwxrwx 1 root root 17 2007-11-04 09:01 /usr/lib/libxml2.so - libxml2.so.2.6.30 lrwxrwxrwx 1 root root 17 2007-11-04 09:01 /usr/lib/libxml2.so.2 - libxml2.so.2.6.30 -rw-r--r-- 1 root root 1166856 2007-10-05 04:08 /usr/lib/libxml2.so.2.6.30 Partial copy-paste, see attachment for the whole thing ls -l /usr/lib/libz* -rw-r--r-- 1 root root 90566 2007-07-29 22:12 /usr/lib/libz.a lrwxrwxrwx 1 root root15 2007-11-04 08:49 /usr/lib/libz.so - libz.so.1.2.3.3 lrwxrwxrwx 1 root root15 2007-11-04 08:47 /usr/lib/libz.so.1 - libz.so.1.2.3.3 -rw-r--r-- 1 root root 80504 2007-07-29 22:12 /usr/lib/libz.so.1.2.3.3 Maybe you know how to handle this ? I have nothing relevant in /usr/local/lib ! ** Attachment added: list http://launchpadlibrarian.net/10268396/list -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
Ok, with a irc chan and a good user, I found and this is not a bug : ldd /usr/lib/libxml2.so.2 linux-gate.so.1 = (0xe000) libdl.so.2 = /lib/tls/i686/cmov/libdl.so.2 (0xb7ec5000) [b]libz.so.1 = /opt/matlab/bin/glnx86/libz.so.1 (0xb7eb4000)[/b] libm.so.6 = /lib/tls/i686/cmov/libm.so.6 (0xb7e8f000) libc.so.6 = /lib/tls/i686/cmov/libc.so.6 (0xb7d45000) /lib/ld-linux.so.2 (0x8000) As you can see, libz is linked to the matlab one (I recently installed it) and this is the cause to my pb... This is the end of 2 days of heavy searches for this problem ! The solution is to unset LD_LIBRARY_PATH for the matlab path and add it just when launching / linking to matlab libraries -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
ok, thanks for clearing that up. Since this is common to a few gutsy upgrades i suspect .. automatix. I installed it to get some multimedia codecs, before I realized there were less intrusive ways of obtaining the desired results. My /usr/local/src is empty, and I believe I haven't installed anything else from source on this box. Thanks for your follow-up. greetings nicholas -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
/usr/local/lib/libz* seems like products of the installer no, /usr/local is not touched by the installer. either you did install the library there yourself, or it was installed by a third party application. maybe other files / applications may point you to the offending application. -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
I ran into the same problem after pushing cancel in update-manager. Only after removing /usr/local/lib/libz* was I able to dpkg -i packages untill dpkg --configure -a was able to finnish. /usr/local/lib/libz* seems like products of the installer, which breaks later if interrupted. delete tem on exit? -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
closing as invalid ** Changed in: libxml2 (Ubuntu) Status: New = Invalid -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
Fixed ! I removed an old libz from /usr/local/lib and ran ldconfig. After that 'sudo aptitude full-upgrade' is very busy. -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
PerJensen, you are wonderful. Fix worked for me. In my case, it was libz 1.2.3 in /usr/local/lib. Thanks. -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
When updating yesterday using the kubuntu update something bad happened. It was not apparent at first. Was told to reboot, which I did. A new kernel - 2.6.22-13-386 - had been installed and after a while I was dumped into a shell with no X, my nvidia-glx driver was not working. ran aptitude update ran aptitude full-upgrade with the following results: [EMAIL PROTECTED]:~$ sudo aptitude full-upgrade Indlæser pakkelisterne... Færdig Opbygger afhængighedstræ Reading state information... Færdig Læser information om udvidet tilstand klargører pakketilstande... Færdig Opbygger database over mærkater... Færdig Følgende pakker vil blive opgraderet: apport capplets-data compiz-gnome evolution gnome-session libgnome2-common libgnomevfs2-common metacity-common nautilus-data sun-java6-jre The following partially installed packages will be configured: apport-gtk apport-qt apturl compiz deskbar-applet evince evolution-common evolution-data-server evolution-plugins gnome-app-install gnome-control-center gnome-panel gnome-panel-data gnome-user-guide language-selector libcamel1.2-10 libebook1.2-9 libecal1.2-7 libedata-book1.2-2 libedata-cal1.2-6 libedataserverui1.2-8 libexchange-storage1.2-3 libgconf2.0-cil libgnome-vfs2.0-cil libgnome-window-settings1 libgnome2-0 libgnome2.0-cil libgnomevfs2-0 libgnomevfs2-bin libgnomevfs2-extra libgtkhtml2.0-cil libmetacity0 libnautilus-extension1 libpanel-applet2-0 libtotem-plparser7 metacity nautilus python-gnome2-extras sun-java6-bin sun-java6-jdk sun-java6-plugin synaptic totem totem-mozilla totem-xine ubuntu-desktop ubuntu-docs update-manager 10 pakker opgraderet, 0 nyinstalleret, 0 til afinstallering og 0 ikke opgraderet. Skal hente 0B/12,2MB arkiver. Efter udpakning vil 2011kB blive frigjort. Vil du fortsætte) [Y/n?] Skriver information om udvidet tilstand... Færdig Prækonfigurerer pakker ... (Læser database... 292051 filer og mapper aktuelt installeret.) Gør klar til at erstatte sun-java6-jre 6-03-0ubuntu1 (med .../sun-java6-jre_6-03-0ubuntu2_all.deb)... sun-dlj-v1-1 license has already been accepted Udpakker erstatning sun-java6-jre... update-mime-database: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 dpkg: advarsel - gammelt post-removal-script returnerede afslutningsstatus 127 dpkg - forsøger i stedet script fra ny pakke... update-mime-database: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 ... and much more of the same, many complaints about /usr/lib/libxml2.so.2: undefined symbol: gzopen64 The gzopen64() is apparently there: [EMAIL PROTECTED]:~$ strings /usr/lib/libxml2.so.2.6.30 |grep gzopen64 gzopen64 Using objdump I get: [EMAIL PROTECTED]:~$ objdump -T /usr/lib/libz.so.1 | grep gzopen64 4040 gDF .text 001b Basegzopen64 Listings of /usr/lib: [EMAIL PROTECTED]:~$ ls -l /usr/lib/libxml2* lrwxrwxrwx 1 root root 17 2007-10-09 16:39 /usr/lib/libxml2.so.2 - libxml2.so.2.6.30 -rw-r--r-- 1 root root 1166856 2007-10-05 10:08 /usr/lib/libxml2.so.2.6.30 [EMAIL PROTECTED]:~$ ls -l /usr/lib/libz* -rw-r--r-- 1 root root 90566 2007-07-30 04:12 /usr/lib/libz.a lrwxrwxrwx 1 root root 18 2007-08-31 14:17 /usr/lib/libzephyr.so.3 - libzephyr.so.3.0.0 -rw-r--r-- 1 root root 40152 2007-08-02 16:23 /usr/lib/libzephyr.so.3.0.0 lrwxrwxrwx 1 root root 15 2007-08-26 22:56 /usr/lib/libz.so - libz.so.1.2.3.3 lrwxrwxrwx 1 root root 15 2007-08-26 22:56 /usr/lib/libz.so.1 - libz.so.1.2.3.3 -rw-r--r-- 1 root root 80504 2007-07-30 04:12 /usr/lib/libz.so.1.2.3.3 lrwxrwxrwx 1 root root 23 2007-08-26 23:32 /usr/lib/libzvbi-chains.so.0 - libzvbi-chains.so.0.0.0 -rw-r--r-- 1 root root 50236 2007-05-01 09:50 /usr/lib/libzvbi-chains.so.0.0.0 lrwxrwxrwx 1 root root 17 2007-08-26 23:32 /usr/lib/libzvbi.so.0 - libzvbi.so.0.10.0 -rw-r--r-- 1 root root 431036 2007-05-01 09:50 /usr/lib/libzvbi.so.0.10.0 Am not running on kernel 2.6.22.12 with crippled firefox and openoffice and presumably many other applications. Feel free to ask for more information. -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
Following is the libxml2 problem I mentioned earlier. Same as the one Peter got. dpkg --configure libgnomevfs2-common Setting up libgnomevfs2-common (1:2.20.0-0ubuntu3) ... gconftool-2: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 dpkg: error processing libgnomevfs2-common (--configure): subprocess post-installation script returned error exit status 127 Errors were encountered while processing: libgnomevfs2-common -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 151045] Re: symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64
Also causing problems with SPE (Stani's Python Editor). result of python /usr/share/spe/_spe/SPE.py --debug ~/Desktop/spe-debug.txt is attached. ** Attachment added: SPE launch debug output http://launchpadlibrarian.net/9912195/spe-debug.txt -- symbol lookup error: /usr/lib/libxml2.so.2: undefined symbol: gzopen64 https://bugs.launchpad.net/bugs/151045 You received this bug notification because you are a member of Ubuntu Bugs, which is the bug contact for Ubuntu. -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
