[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2011-09-19 Thread Ubuntu QA's Bug Bot
** Tags added: testcase

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Title:
  MySQL upstart stop job does not cleanly shutdown mysql

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-12-16 Thread Robert Citek
We got bitten by this bug and are now checking tables on our DBs.
What's interesting is that we made changes to the mysql upstart script
but they do not seem to be taking effect.  In particular:

1) changes to the kill timeout.  Changing the value to 300 had no
effect.  Even after issuing an initctl reload-configuration, upstart
still appeared to kill mysqld after about 5 seconds.  We are still in
the process of confirming.

2) commented out respawn.  This also had no effect on mysqladmin stop,
which would cleanly stop mysql, but almost immediatly, mysqld would
restart.  Here's a sample:

$ (  set -x ; sudo mysqladmin status ; sudo mysqladmin shutdown ; sleep 10 ; 
sudo mysqladmin status )
+ sudo mysqladmin status
Uptime: 92  Threads: 1  Questions: 7882  Slow queries: 1  Opens: 71 Flush 
tables: 1  Open tables: 64  Queries per second avg: 85.673
+ sudo mysqladmin shutdown
+ sleep 10
+ sudo mysqladmin status
Uptime: 11  Threads: 1  Questions: 919  Slow queries: 1  Opens: 49 Flush 
tables: 1  Open tables: 42  Queries per second avg: 83.545

This is on Ubuntu Lucid. 10.04 running mysql-server-5.1
(5.1.41-3ubuntu12.6)

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Title:
  MySQL upstart stop job does not cleanly shutdown mysql

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-12-16 Thread Robert Citek
Had some issues getting changes in mysql's upstart script from taking
effect.  This demonstrates the issue, using the respawn command as the
example, and a solution.

$ grep respawn /etc/init/mysql.conf 
respawn

$ sudo mysqladmin status ; sudo mysqladmin shutdown ; sudo mysqladmin status ; 
sleep 10 ; sudo mysqladmin status
Uptime: 29  Threads: 1  Questions: 100  Slow queries: 0  Opens: 99  Flush 
tables: 1  Open tables: 23  Queries per second avg: 3.448
Uptime: 1  Threads: 1  Questions: 1  Slow queries: 0  Opens: 15  Flush tables: 
1  Open tables: 8  Queries per second avg: 1.0
Uptime: 11  Threads: 1  Questions: 99  Slow queries: 0  Opens: 99  Flush 
tables: 1  Open tables: 23  Queries per second avg: 9.0

$ sudo sed -i.bak -e 's/respawn/# respawn/' /etc/init/mysql.conf

$ grep respawn /etc/init/mysql.conf 
# respawn

$ sudo mysqladmin status ; sudo mysqladmin shutdown ; sudo mysqladmin status ; 
sleep 10 ; sudo mysqladmin status
Uptime: 5  Threads: 1  Questions: 98  Slow queries: 0  Opens: 99  Flush tables: 
1  Open tables: 23  Queries per second avg: 19.600
Uptime: 1  Threads: 1  Questions: 1  Slow queries: 0  Opens: 15  Flush tables: 
1  Open tables: 8  Queries per second avg: 1.0
Uptime: 11  Threads: 1  Questions: 99  Slow queries: 0  Opens: 99  Flush 
tables: 1  Open tables: 23  Queries per second avg: 9.0

$ sudo mysqladmin shutdown ; sudo service mysql stop
mysql stop/waiting

$ sudo service mysql start
mysql start/running, process 10405

$ sudo mysqladmin status ; sudo mysqladmin shutdown ; sudo mysqladmin status ; 
sleep 10 ; sudo mysqladmin status
Uptime: 6  Threads: 1  Questions: 98  Slow queries: 0  Opens: 99  Flush tables: 
1  Open tables: 23  Queries per second avg: 16.333
mysqladmin: connect to server at 'localhost' failed
error: 'Can't connect to local MySQL server through socket 
'/var/run/mysqld/mysqld.sock' (2)'
Check that mysqld is running and that the socket: '/var/run/mysqld/mysqld.sock' 
exists!
mysqladmin: connect to server at 'localhost' failed
error: 'Can't connect to local MySQL server through socket 
'/var/run/mysqld/mysqld.sock' (2)'
Check that mysqld is running and that the socket: '/var/run/mysqld/mysqld.sock' 
exists!

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Title:
  MySQL upstart stop job does not cleanly shutdown mysql

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-12-09 Thread Launchpad Bug Tracker
This bug was fixed in the package mysql-dfsg-5.1 - 5.1.41-3ubuntu12.8

---
mysql-dfsg-5.1 (5.1.41-3ubuntu12.8) lucid-proposed; urgency=low

  * raising kill timeout to 300 to help avoid table corruption (LP: #620441)
 -- Clint Byrum cl...@ubuntu.com   Sat, 20 Nov 2010 12:06:00 -0800

** Changed in: mysql-dfsg-5.1 (Ubuntu Lucid)
   Status: Fix Committed = Fix Released

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-12-06 Thread Martin Pitt
** Tags added: verification-done
** Tags removed: verification-needed

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-12-05 Thread Imre Gergely
I tried it with a simplified test case with just DELETEing a lot of data
from the table with 1.5mil rows.

The DELETE command took like a minute and a half to return. After it returned, 
I immediately did 'stop mysql' and saw the KILL message in the daemon.log after 
~5 seconds.
After I started mysql again, I got the recovery messages in 
/var/log/mysql/error.log like this:

InnoDB: Log scan progressed past the checkpoint lsn 0 241337601
101205 23:35:25  InnoDB: Database was not shut down normally!
InnoDB: Starting crash recovery.
InnoDB: Reading tablespace information from the .ibd files...
InnoDB: Restoring possible half-written data pages from the doublewrite
InnoDB: buffer...

With the mysql package from -proposed (5.1.41-3ubuntu12.8) when I issued
'stop mysql' after DELETE, it was just sitting there, nothing in
daemon.log, and in mysql/error.log I got

101205 23:51:25 [Note] Event Scheduler: Purging the queue. 0 events
101205 23:51:27  InnoDB: Starting shutdown...
101205 23:51:40  InnoDB: Shutdown completed; log sequence number 0 258830313
101205 23:51:40 [Note] /usr/sbin/mysqld: Shutdown complete

so it was waiting for InnoDB to finish whatever it was doing (that took
13 seconds) and then it stopped. After starting mysql up again there was
obviously no recovery needed.

Seems to me the fix is working fine.

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-12-03 Thread Martin Pitt
Accepted mysql-dfsg-5.1 into lucid-proposed, the package will build now
and be available in a few hours. Please test and give feedback here. See
https://wiki.ubuntu.com/Testing/EnableProposed for documentation how to
enable and use -proposed. Thank you in advance!

** Tags added: verification-needed

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-12-03 Thread Launchpad Bug Tracker
** Branch linked: lp:ubuntu/lucid-proposed/mysql-dfsg-5.1

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-12-01 Thread Bryce Harrington
Sponsored upload of SRU patch to lucid-proposed

** Changed in: mysql-dfsg-5.1 (Ubuntu Lucid)
   Status: Triaged = Fix Committed

** Changed in: mysql-dfsg-5.1 (Ubuntu Lucid)
 Assignee: (unassigned) = Clint Byrum (clint-fewbar)

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-11-22 Thread Martin Pitt
SRU ack, please upload.

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-11-21 Thread Clint Byrum
paukaija, thanks for the reminder, I just subscribed ubuntu-sru

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-11-20 Thread Launchpad Bug Tracker
** Branch linked: lp:~clint-fewbar/ubuntu/lucid/mysql-dfsg-5.1/increase-
killtimeout

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-11-20 Thread Clint Byrum
** Description changed:

  Release:  Ubuntu 10.04 LTS
  Package Version: 5.1.41-3ubuntu12.6
  
  Stopping a MySQL server can take some time, especially on a busy
  database. If mysqld gets killed while having open connections, then
  after the next start you will likely have a lot of tables corrupted.
  
  The new upstart mechanism for starting/stopping mysql unfortunately behaves 
as follows on a service mysql stop:
  1. First it will send a TERM signal to mysqld which is perfectly fine as 
mysqld will do the same as if you would issue a mysqladmin shutdown command
  2. If after 5 seconds the process is still not terminated, a KILL signal will 
be send. This is really a very big issue since on busy servers lots of myisam 
tables will be corrupted afterwards
  
  Expected behaviour:
  Send the term signal and wait for a certain amount of time (at least 1 
minute). If still not stopped, then simply give an error about this to the user
+ 
+ == SRU REPORT ==
+ 
+ === IMPACT ===
+ 
+ This has very little impact on a normal running system. It may cause
+ shutdown to take up to 5 minutes, but that is an acceptable trade off as
+ recovering a system with crashed tables can take much, much longer.
+ 
+ === DEV FIX ===
+ 
+ Raising kill timeout to 300 seconds seems a good trade off between
+ shutdown potentially taking forever, and trying not to corrupt tables.
+ 
+ === PATCH ===
+ 
+ See merge proposal
+ 
+ === TEST CASE: ===
+ 
+ This is a race condition, so it is hard to reproduce reliably. However,
+ if you:
+ 
+ 1. create a very large innodb table
+ 2. import a lot of data (inserting more MB of data than your drives can write 
in 5 seconds should work) 
+ 3. run a very long select on the data in one thread (SELECT * FROM table 
WHERE column like '%X%';)
+ 4. DELETE that data in another thread
+ 5. issue 'stop mysql' immediately after the delete returns.
+ 6. check to see that mysqld was sent SIGKILL in /var/log/daemon.log
+ 7. start mysql -- at this point InnoDB recovery will need to be run
+ 
+ Once the fix is applied, the SIGKILL should never be sent.
+ 
+ === REGRESSION POTENTIAL ===
+ 
+ The only regression potential is mentioned in the IMPACT section, that
+ the shutdown of a server or the mysql service may take up to 5 minutes.

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-11-20 Thread papukaija
Should ubuntu-sru be subscribed to this bug report?

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-19 Thread Launchpad Bug Tracker
** Branch linked: lp:ubuntu/mysql-5.1

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-15 Thread Mathias Gug
** Changed in: mysql-dfsg-5.1 (Ubuntu Maverick)
 Assignee: (unassigned) = Clint Byrum (clint-fewbar)

** Changed in: mysql-dfsg-5.1 (Ubuntu Maverick)
   Status: Confirmed = In Progress

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-15 Thread Mathias Gug
This bug should probably be backported to lucid as well. Accepting lucid
nomination.

To move the SRU forward, the next step is to prepare a SRU report as
outlined in https://wiki.ubuntu.com/StableReleaseUpdates#Procedure.

** Changed in: mysql-dfsg-5.1 (Ubuntu Maverick)
   Status: In Progress = Fix Released

** Also affects: mysql-dfsg-5.1 (Ubuntu Lucid)
   Importance: Undecided
   Status: New

** Changed in: mysql-dfsg-5.1 (Ubuntu Lucid)
   Importance: Undecided = High

** Changed in: mysql-dfsg-5.1 (Ubuntu Lucid)
   Status: New = Incomplete

** Changed in: mysql-dfsg-5.1 (Ubuntu Lucid)
   Status: Incomplete = Confirmed

** Changed in: mysql-dfsg-5.1 (Ubuntu Lucid)
   Status: Confirmed = Triaged

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-14 Thread Clint Byrum
This is awaiting sponsorship, please see the merge proposal.

** Tags added: patch

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-09 Thread Thierry Carrez
+1

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-08 Thread Launchpad Bug Tracker
** Branch linked: lp:~clint-fewbar/ubuntu/maverick/mysql-5.1/increase-
killtimeout

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-08 Thread Clint Byrum
Ultimately, I believe what Johan stated previously is correct. If your
mysql daemon is not stopping when you tell it to shutdown, then you
should be concerned.

I've pushed a branch up now that raises kill timeout to 300 seconds.

5 minutes should be long enough for most databases to finish flushing.
Any longer and the system reboot/halt will be delayed unacceptably. I'm
thinking about what happens when a UPS dies and the sysadmin tries to
shut down the server. kill -9 is still less violent than a total system
power off!.

I'm also starting a discussion with our documentation team about
recommending InnoDB as the safer table type, and I've opened a new bug
report to suggest that InnoDB be the default table_type:

https://bugs.launchpad.net/ubuntu/+source/mysql-5.1/+bug/633364

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-08 Thread Clint Byrum
** Changed in: mysql-dfsg-5.1 (Ubuntu Maverick)
   Status: Triaged = Confirmed

** Changed in: mysql-dfsg-5.1 (Ubuntu Maverick)
 Assignee: Clint Byrum (clint-fewbar) = (unassigned)

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-02 Thread Thierry Carrez
** Tags added: server-mrs

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-02 Thread Scott James Remnant
** Changed in: upstart
   Status: New = Invalid

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-09-02 Thread Clint Byrum
In doing research for this fix, I'm having trouble finding a set of best
practices for upstart jobs in Ubuntu. If anyone has a link or list of
them, please do post here, as I am a bit confused about how to interact
with the user. console output seems a hacky way (user may not have
console if ssh'ing in for instance). So, logger? Something else?

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-26 Thread Thierry Carrez
** Changed in: mysql-dfsg-5.1 (Ubuntu)
 Assignee: (unassigned) = Clint Byrum (clint-fewbar)

** Also affects: mysql-dfsg-5.1 (Ubuntu Maverick)
   Importance: High
 Assignee: Clint Byrum (clint-fewbar)
   Status: Triaged

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-26 Thread papukaija
** Tags added: lucid

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-24 Thread Scott James Remnant
You can use a pre-stop script/exec to send the proper command to stop
mysql and to wait for it to shut down.

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-24 Thread Clint Byrum
Scott, thanks for the suggestion, I hadn't thought of anything like
that.

Can we abort the stop from pre-stop somehow? Otherwise I'm afraid users
will either be left waiting forever, or still sending SIGKILL.

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Re: [Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-24 Thread Scott James Remnant
On Tue, 2010-08-24 at 16:23 +, Clint Byrum wrote:

 Can we abort the stop from pre-stop somehow? Otherwise I'm afraid users
 will either be left waiting forever, or still sending SIGKILL.
 
You can call start from the pre-stop script, which will return the job
to a running state.

That being said, Upstart will happily wait forever for pre-stop before
sending SIGKILL - so if the database takes a long time to stop, that's
ok

Scott
-- 
Have you ever, ever felt like this?
Had strange things happen?  Are you going round the twist?

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Re: [Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-24 Thread Clint Byrum

On Aug 24, 2010, at 9:50 AM, Scott James Remnant wrote:

 On Tue, 2010-08-24 at 16:23 +, Clint Byrum wrote:
 
 Can we abort the stop from pre-stop somehow? Otherwise I'm afraid users
 will either be left waiting forever, or still sending SIGKILL.
 
 You can call start from the pre-stop script, which will return the job
 to a running state.
 

This sounds like a solution then... in pseudo code

while true
  send shutdown to mysql
  wait 5 seconds
  if mysql still running
if runlevel not in (0,1,6)
  # manual stop, not reboot/halt
  if 30 seconds has passed
report to user that mysql will probably die and restart
start again # will respawn mysqld when it does die
else
  log warning about waiting forever to reboot/halt..
  else
break # service is dead

 That being said, Upstart will happily wait forever for pre-stop before
 sending SIGKILL - so if the database takes a long time to stop, that's
 ok

It would be ok, but I'm not sure I like it.

Would there be an indication anywhere for users that they're waiting on
mysql to die?

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-24 Thread Johan Kiviniemi
 Would there be an indication anywhere for users that they're waiting
on mysql to die?

The ‘stop’ command having not returned yet, and ‘status jobname’ saying
‘stopping’.

If a bug in a service causes a stop request not to stop it, the service
should be fixed.

As for the pseudocode, I don’t think respawning is expected behavior
when the user has requested a job to stop.

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Re: [Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-24 Thread Clint Byrum

On Aug 24, 2010, at 1:22 PM, Johan Kiviniemi wrote:

 Would there be an indication anywhere for users that they're waiting
 on mysql to die?
 
 The ‘stop’ command having not returned yet, and ‘status jobname’ saying
 ‘stopping’.
 
 If a bug in a service causes a stop request not to stop it, the service
 should be fixed.
 

I had made some assumptions about the shutdown process until now based
on my past experience, but it is detailed here:

http://dev.mysql.com/doc/refman/5.1/en/server-shutdown.html

So the only thing that *should* cause a really long shutdown time is a
giant transaction rollback.

 As for the pseudocode, I don’t think respawning is expected behavior
 when the user has requested a job to stop.

Agreed... I'm still worried about restarts during upgrades spinning
forever though. I guess as long as the script tells the user Waiting
for mysql to shutdown.. ## threads still running.. every 30 seconds
that would probably be enough.

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-19 Thread Scott Moser
Thank you for your complete bug report.

It would seem this can be fixed in the upstart job with a line like 'kill 
timeout 300'.  From man 5 init:
  | kill timeout INTERVAL
  |   Specifies  the  interval  between sending the job's main process
  |the SIGTERM and SIGKILL signals when stopping the running job.


** Changed in: mysql-dfsg-5.1 (Ubuntu)
   Importance: Undecided = High

** Changed in: mysql-dfsg-5.1 (Ubuntu)
   Status: New = Triaged

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-19 Thread Clint Byrum
Scott, I've experienced problems with SIGKILL's corrupting mysql
databases before, so the workaround given might be a little misleading.
MySQL can actually be stuck waiting on a single query to finish before
it can shut down, and some queries might take *hours*.

That said, its a known tradeoff if you're using MyISAM that you may
corrupt tables. The workaround is to do as suggested above, and also
move to transactional storage such as InnoDB. With InnoDB the database
integrity will survive a SIGKILL (though the next startup may take
several hours in recovery if the system has large transaction logs).

5 minutes seems an appropriate length of time to wait. However, is there
any way to cancel it?

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[Bug 620441] Re: MySQL upstart stop job does not cleanly shutdown mysql

2010-08-19 Thread Folke Lemaitre
Actually the SIGKILL is really always a no go unless a sysadmin decides
to do this manually. An upstart script should never do this
automatically (not even as a feature ;-) ) I can guarantee that in more
than 90% of the cases after a SIGKILL you will have corrupted tables.
With the default config of auto recover myisam tables and smaller sites
having small databases, this is not such an issue (altough eventually
you will have dataloss), but in larger setups with tables containing
millions of records this is really a nightmare. In large scale setups
where transactions are not necessary, it doesn't make sense to use
INNODB instead and indeed, with innodb you would have the exact same
issue.

Ideally, the upstart mechanism should have support for kill timeout 0
meaning a KILL will never be send for that specific job. If the user
still wants to kill, ideally he should be able to do stop --force
mysql.

Since upstart does not support this mechanism, I suggest to indeed add
kill timeout 900.

With the init.d system the mysql stop was handled a lot better. It
simply sent the TERM signal and waited for 20 seconds. If after 20
seconds MySQL was still running, the stop returned with an error saying
so and an exit code != 0

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