RE: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory
Which version / distribution are you using? Please references this blog that Felix C posted if you’re running on CDH. http://eradiating.wordpress.com/2015/02/22/getting-hivecontext-to-work-in-cdh/ Or you may also need to download the datanucleus*.jar files try to add the option of “--jars” while starting the spark shell. From: Anusha Shamanur [mailto:anushas...@gmail.com] Sent: Wednesday, March 4, 2015 5:07 AM To: Cheng, Hao Subject: Re: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory Hi, I am getting the same error. There is no lib folder in my $SPARK_HOME. But I included these jars while calling spark-shell. Now, I get this: Caused by: org.datanucleus.exceptions.ClassNotResolvedException: Class org.datanucleus.store.rdbms.RDBMSStoreManager was not found in the CLASSPATH. Please check your specification and your CLASSPATH. at org.datanucleus.ClassLoaderResolverImpl.classForName(ClassLoaderResolverImpl.java:218) How do I solve this? On Mon, Mar 2, 2015 at 11:04 PM, Cheng, Hao hao.ch...@intel.commailto:hao.ch...@intel.com wrote: Copy those jars into the $SPARK_HOME/lib/ datanucleus-api-jdo-3.2.6.jar datanucleus-core-3.2.10.jar datanucleus-rdbms-3.2.9.jar see https://github.com/apache/spark/blob/master/bin/compute-classpath.sh#L120 -Original Message- From: fanooos [mailto:dev.fano...@gmail.commailto:dev.fano...@gmail.com] Sent: Tuesday, March 3, 2015 2:50 PM To: user@spark.apache.orgmailto:user@spark.apache.org Subject: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory I have installed a hadoop cluster (version : 2.6.0), apache spark (version : 1.2.1 preBuilt for hadoop 2.4 and later), and hive (version 1.0.0). When I try to start the spark sql thrift server I am getting the following exception. Exception in thread main java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346) at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:235) at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:231) at scala.Option.orElse(Option.scala:257) at org.apache.spark.sql.hive.HiveContext.x$3$lzycompute(HiveContext.scala:231) at org.apache.spark.sql.hive.HiveContext.x$3(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.hiveconf$lzycompute(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.hiveconf(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:292) at org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276) at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:248) at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:91) at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:90) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at org.apache.spark.sql.SQLContext.init(SQLContext.scala:90) at org.apache.spark.sql.hive.HiveContext.init(HiveContext.scala:72) at org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:51) at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:56) at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358) at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75) at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.init(RetryingMetaStoreClient.java:62) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72) at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453) at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2465) at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:340) ... 26 more
Re: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory
I downloaded different versions of the jars and it worked. Thanks! On Tue, Mar 3, 2015 at 4:45 PM, Cheng, Hao hao.ch...@intel.com wrote: Which version / distribution are you using? Please references this blog that Felix C posted if you’re running on CDH. http://eradiating.wordpress.com/2015/02/22/getting-hivecontext-to-work-in-cdh/ Or you may also need to download the datanucleus*.jar files try to add the option of “--jars” while starting the spark shell. *From:* Anusha Shamanur [mailto:anushas...@gmail.com] *Sent:* Wednesday, March 4, 2015 5:07 AM *To:* Cheng, Hao *Subject:* Re: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory Hi, I am getting the same error. There is no lib folder in my $SPARK_HOME. But I included these jars while calling spark-shell. Now, I get this: Caused by: org.datanucleus.exceptions.ClassNotResolvedException: Class org.datanucleus.store.rdbms.RDBMSStoreManager was not found in the CLASSPATH. Please check your specification and your CLASSPATH. at org.datanucleus.ClassLoaderResolverImpl.classForName(ClassLoaderResolverImpl.java:218) How do I solve this? On Mon, Mar 2, 2015 at 11:04 PM, Cheng, Hao hao.ch...@intel.com wrote: Copy those jars into the $SPARK_HOME/lib/ datanucleus-api-jdo-3.2.6.jar datanucleus-core-3.2.10.jar datanucleus-rdbms-3.2.9.jar see https://github.com/apache/spark/blob/master/bin/compute-classpath.sh#L120 -Original Message- From: fanooos [mailto:dev.fano...@gmail.com] Sent: Tuesday, March 3, 2015 2:50 PM To: user@spark.apache.org Subject: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory I have installed a hadoop cluster (version : 2.6.0), apache spark (version : 1.2.1 preBuilt for hadoop 2.4 and later), and hive (version 1.0.0). When I try to start the spark sql thrift server I am getting the following exception. Exception in thread main java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346) at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:235) at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:231) at scala.Option.orElse(Option.scala:257) at org.apache.spark.sql.hive.HiveContext.x$3$lzycompute(HiveContext.scala:231) at org.apache.spark.sql.hive.HiveContext.x$3(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.hiveconf$lzycompute(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.hiveconf(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:292) at org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276) at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:248) at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:91) at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:90) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at org.apache.spark.sql.SQLContext.init(SQLContext.scala:90) at org.apache.spark.sql.hive.HiveContext.init(HiveContext.scala:72) at org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:51) at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:56) at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358) at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75) at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.init(RetryingMetaStoreClient.java:62) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72) at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453
RE: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory
Copy those jars into the $SPARK_HOME/lib/ datanucleus-api-jdo-3.2.6.jar datanucleus-core-3.2.10.jar datanucleus-rdbms-3.2.9.jar see https://github.com/apache/spark/blob/master/bin/compute-classpath.sh#L120 -Original Message- From: fanooos [mailto:dev.fano...@gmail.com] Sent: Tuesday, March 3, 2015 2:50 PM To: user@spark.apache.org Subject: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory I have installed a hadoop cluster (version : 2.6.0), apache spark (version : 1.2.1 preBuilt for hadoop 2.4 and later), and hive (version 1.0.0). When I try to start the spark sql thrift server I am getting the following exception. Exception in thread main java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346) at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:235) at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:231) at scala.Option.orElse(Option.scala:257) at org.apache.spark.sql.hive.HiveContext.x$3$lzycompute(HiveContext.scala:231) at org.apache.spark.sql.hive.HiveContext.x$3(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.hiveconf$lzycompute(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.hiveconf(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:292) at org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276) at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:248) at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:91) at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:90) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at org.apache.spark.sql.SQLContext.init(SQLContext.scala:90) at org.apache.spark.sql.hive.HiveContext.init(HiveContext.scala:72) at org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:51) at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:56) at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358) at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75) at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.init(RetryingMetaStoreClient.java:62) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72) at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453) at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2465) at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:340) ... 26 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1410) ... 31 more Caused by: javax.jdo.JDOFatalUserException: Class org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found. NestedThrowables: java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175) at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808) at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701) at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:310) at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:339)
