Re: NodeTableTRDF/Read exception
On 28/05/2021 14:59, Mikael Pesonen wrote: I should try some older Jena/Fuseki version? Yes. Also - run on different hardware. - run multiple times - look at the data and see if anything unusual is in it. etc etc On 28/05/2021 16.49, Andy Seaborne wrote: On 28/05/2021 14:03, Mikael Pesonen wrote: No this is the fresh db, started from empty today. And plenty of disk space. So it's repeatble. With no Minimal, Verifiable, Complete Example, it'll have to be an on-site investigation. Try different versions. Andy On 28/05/2021 15.58, Andy Seaborne wrote: Why are you adding data to a broken database? On 28/05/2021 12:02, Mikael Pesonen wrote: Actually now it happened again. Same size, about 80MB of turtle, imported without warnings this time, but reading the graph fails with this exception. 13:59:39 WARN Fuseki :: [44] RC = 500 : NodeTableTRDF/Read org.apache.jena.tdb2.TDBException: NodeTableTRDF/Read at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:103) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache._retrieveNodeByNodeId(NodeTableCache.java:206) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache.getNodeForNodeId(NodeTableCache.java:131) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:113) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:108) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.lambda$convertToQuads$3(TupleLib.java:53) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.IteratorWrapper.next(IteratorWrapper.java:36) ~[fuseki-server.jar:3.17.0] at org.apache.jena.dboe.transaction.txn.IteratorTxnTracker.next(IteratorTxnTracker.java:39) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter.next(Iter.java:1072) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:47) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:31) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterTriplePattern$TripleMapper.hasNextBinding(QueryIterTriplePattern.java:145) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:74) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterBlockTriplesStar.hasNextBinding(QueryIterBlockTriplesStar.java:54) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114)
Re: NodeTableTRDF/Read exception
I should try some older Jena/Fuseki version? On 28/05/2021 16.49, Andy Seaborne wrote: On 28/05/2021 14:03, Mikael Pesonen wrote: No this is the fresh db, started from empty today. And plenty of disk space. So it's repeatble. With no Minimal, Verifiable, Complete Example, it'll have to be an on-site investigation. Try different versions. Andy On 28/05/2021 15.58, Andy Seaborne wrote: Why are you adding data to a broken database? On 28/05/2021 12:02, Mikael Pesonen wrote: Actually now it happened again. Same size, about 80MB of turtle, imported without warnings this time, but reading the graph fails with this exception. 13:59:39 WARN Fuseki :: [44] RC = 500 : NodeTableTRDF/Read org.apache.jena.tdb2.TDBException: NodeTableTRDF/Read at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:103) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache._retrieveNodeByNodeId(NodeTableCache.java:206) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache.getNodeForNodeId(NodeTableCache.java:131) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:113) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:108) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.lambda$convertToQuads$3(TupleLib.java:53) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.IteratorWrapper.next(IteratorWrapper.java:36) ~[fuseki-server.jar:3.17.0] at org.apache.jena.dboe.transaction.txn.IteratorTxnTracker.next(IteratorTxnTracker.java:39) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter.next(Iter.java:1072) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:47) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:31) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterTriplePattern$TripleMapper.hasNextBinding(QueryIterTriplePattern.java:145) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:74) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterBlockTriplesStar.hasNextBinding(QueryIterBlockTriplesStar.java:54) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at
Re: NodeTableTRDF/Read exception
On 28/05/2021 14:03, Mikael Pesonen wrote: No this is the fresh db, started from empty today. And plenty of disk space. So it's repeatble. With no Minimal, Verifiable, Complete Example, it'll have to be an on-site investigation. Try different versions. Andy On 28/05/2021 15.58, Andy Seaborne wrote: Why are you adding data to a broken database? On 28/05/2021 12:02, Mikael Pesonen wrote: Actually now it happened again. Same size, about 80MB of turtle, imported without warnings this time, but reading the graph fails with this exception. 13:59:39 WARN Fuseki :: [44] RC = 500 : NodeTableTRDF/Read org.apache.jena.tdb2.TDBException: NodeTableTRDF/Read at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:103) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache._retrieveNodeByNodeId(NodeTableCache.java:206) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache.getNodeForNodeId(NodeTableCache.java:131) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:113) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:108) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.lambda$convertToQuads$3(TupleLib.java:53) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.IteratorWrapper.next(IteratorWrapper.java:36) ~[fuseki-server.jar:3.17.0] at org.apache.jena.dboe.transaction.txn.IteratorTxnTracker.next(IteratorTxnTracker.java:39) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter.next(Iter.java:1072) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:47) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:31) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterTriplePattern$TripleMapper.hasNextBinding(QueryIterTriplePattern.java:145) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:74) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterBlockTriplesStar.hasNextBinding(QueryIterBlockTriplesStar.java:54) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65)
Re: NodeTableTRDF/Read exception
No this is the fresh db, started from empty today. And plenty of disk space. On 28/05/2021 15.58, Andy Seaborne wrote: Why are you adding data to a broken database? On 28/05/2021 12:02, Mikael Pesonen wrote: Actually now it happened again. Same size, about 80MB of turtle, imported without warnings this time, but reading the graph fails with this exception. 13:59:39 WARN Fuseki :: [44] RC = 500 : NodeTableTRDF/Read org.apache.jena.tdb2.TDBException: NodeTableTRDF/Read at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:103) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache._retrieveNodeByNodeId(NodeTableCache.java:206) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache.getNodeForNodeId(NodeTableCache.java:131) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:113) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:108) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.lambda$convertToQuads$3(TupleLib.java:53) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.IteratorWrapper.next(IteratorWrapper.java:36) ~[fuseki-server.jar:3.17.0] at org.apache.jena.dboe.transaction.txn.IteratorTxnTracker.next(IteratorTxnTracker.java:39) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter.next(Iter.java:1072) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:47) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:31) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterTriplePattern$TripleMapper.hasNextBinding(QueryIterTriplePattern.java:145) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:74) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterBlockTriplesStar.hasNextBinding(QueryIterBlockTriplesStar.java:54) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at
Re: NodeTableTRDF/Read exception
Why are you adding data to a broken database? On 28/05/2021 12:02, Mikael Pesonen wrote: Actually now it happened again. Same size, about 80MB of turtle, imported without warnings this time, but reading the graph fails with this exception. 13:59:39 WARN Fuseki :: [44] RC = 500 : NodeTableTRDF/Read org.apache.jena.tdb2.TDBException: NodeTableTRDF/Read at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:103) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache._retrieveNodeByNodeId(NodeTableCache.java:206) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache.getNodeForNodeId(NodeTableCache.java:131) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:113) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:108) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.lambda$convertToQuads$3(TupleLib.java:53) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.IteratorWrapper.next(IteratorWrapper.java:36) ~[fuseki-server.jar:3.17.0] at org.apache.jena.dboe.transaction.txn.IteratorTxnTracker.next(IteratorTxnTracker.java:39) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter.next(Iter.java:1072) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:47) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:31) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterTriplePattern$TripleMapper.hasNextBinding(QueryIterTriplePattern.java:145) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:74) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterBlockTriplesStar.hasNextBinding(QueryIterBlockTriplesStar.java:54) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0]
Re: NodeTableTRDF/Read exception
Actually now it happened again. Same size, about 80MB of turtle, imported without warnings this time, but reading the graph fails with this exception. 13:59:39 WARN Fuseki :: [44] RC = 500 : NodeTableTRDF/Read org.apache.jena.tdb2.TDBException: NodeTableTRDF/Read at org.apache.jena.tdb2.store.nodetable.NodeTableTRDF.readNodeFromTable(NodeTableTRDF.java:87) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative._retrieveNodeByNodeId(NodeTableNative.java:103) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableNative.getNodeForNodeId(NodeTableNative.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache._retrieveNodeByNodeId(NodeTableCache.java:206) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableCache.getNodeForNodeId(NodeTableCache.java:131) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableWrapper.getNodeForNodeId(NodeTableWrapper.java:52) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.store.nodetable.NodeTableInline.getNodeForNodeId(NodeTableInline.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:113) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.quad(TupleLib.java:108) ~[fuseki-server.jar:3.17.0] at org.apache.jena.tdb2.lib.TupleLib.lambda$convertToQuads$3(TupleLib.java:53) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.IteratorWrapper.next(IteratorWrapper.java:36) ~[fuseki-server.jar:3.17.0] at org.apache.jena.dboe.transaction.txn.IteratorTxnTracker.next(IteratorTxnTracker.java:39) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter$2.next(Iter.java:352) ~[fuseki-server.jar:3.17.0] at org.apache.jena.atlas.iterator.Iter.next(Iter.java:1072) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.util.iterator.WrappedIterator.next(WrappedIterator.java:94) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:47) ~[fuseki-server.jar:3.17.0] at org.apache.jena.mem.TrackingTripleIterator.next(TrackingTripleIterator.java:31) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterTriplePattern$TripleMapper.hasNextBinding(QueryIterTriplePattern.java:145) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:74) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterBlockTriplesStar.hasNextBinding(QueryIterBlockTriplesStar.java:54) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:114) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.makeNextStage(QueryIterRepeatApply.java:101) ~[fuseki-server.jar:3.17.0] at org.apache.jena.sparql.engine.iterator.QueryIterRepeatApply.hasNextBinding(QueryIterRepeatApply.java:65)
