Re: [OMPI users] [EXTERNAL] Linker errors in Fedora 34 Docker container

2021-05-26 Thread John Haiducek via users 
On Wed, May 26, 2021, 12:01 Pritchard Jr., Howard  wrote:

>
>
> For the record were you using a docker container unmodified from docker
> hub?
>

I used the fedora:34 container from Docker Hub. It wasn't modified much; I
added a few packages like gcc and cmake that were required to build openmpi
and the rest of my project. I've attached a minimal Dockerfile that
reproduces the problem (the attached Dockerfile produces a longer list of
linker errors than what I posted earlier, but I suspect the root cause of
the failure is the same).

>


Dockerfile.openmpi-fedora
Description: Binary data

Re: [OMPI users] [EXTERNAL] Linker errors in Fedora 34 Docker container

2021-05-26 Thread Pritchard Jr., Howard via users 
Hi John,

Good to know.  For the record were you using a docker container unmodified from 
docker hub?

Howard

From: John Haiducek 
Date: Wednesday, May 26, 2021 at 9:35 AM
To: "Pritchard Jr., Howard" 
Cc: "users@lists.open-mpi.org" 
Subject: Re: [EXTERNAL] [OMPI users] Linker errors in Fedora 34 Docker container

That was it, thank you! After installing findutils it builds successfully.

John


On May 26, 2021, at 10:49 AM, Pritchard Jr., Howard 
mailto:howa...@lanl.gov>> wrote:

Hi John,

I don’t like this in the make output:

../../libtool: line 5705: find: command not found

Maybe you need to install findutils or relevant fedora rpm in your container?

Howard


From: John Haiducek mailto:jhaid...@gmail.com>>
Date: Wednesday, May 26, 2021 at 7:29 AM
To: "Pritchard Jr., Howard" mailto:howa...@lanl.gov>>, 
"users@lists.open-mpi.org" 
mailto:users@lists.open-mpi.org>>
Subject: Re: [EXTERNAL] [OMPI users] Linker errors in Fedora 34 Docker container





On May 25, 2021, at 6:53 PM, Pritchard Jr., Howard 
mailto:howa...@lanl.gov>> wrote:

In your build area, do you see any .lo files in opal/util/coeval?

That directory doesn’t exist in my build area. In opal/util/keyval I have 
keyval_lex.lo.




Which compiler are you using?

gcc 11.1.1



 Also, are you building from the tarballs at 
https://www.open-mpi.org/software/ompi/v4.1/ ?

Yes; specifically I’m using the tarball from 
https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.1.tar.bz2

John

Re: [OMPI users] [EXTERNAL] Linker errors in Fedora 34 Docker container

2021-05-26 Thread John Haiducek via users 
That was it, thank you! After installing findutils it builds successfully.

John

> On May 26, 2021, at 10:49 AM, Pritchard Jr., Howard  wrote:
> 
> Hi John,
>  
> I don’t like this in the make output:
>  
> ../../libtool: line 5705: find: command not found
>  
> Maybe you need to install findutils or relevant fedora rpm in your container?
>  
> Howard
>  
>  
> From: John Haiducek 
> Date: Wednesday, May 26, 2021 at 7:29 AM
> To: "Pritchard Jr., Howard" , "users@lists.open-mpi.org" 
> 
> Subject: Re: [EXTERNAL] [OMPI users] Linker errors in Fedora 34 Docker 
> container
>  
>  
> 
> 
>> On May 25, 2021, at 6:53 PM, Pritchard Jr., Howard > > wrote:
>>  
>> In your build area, do you see any .lo files in opal/util/coeval?
>  
> That directory doesn’t exist in my build area. In opal/util/keyval I have 
> keyval_lex.lo.
> 
> 
>>  
>> Which compiler are you using?
>  
> gcc 11.1.1
> 
> 
>>  Also, are you building from the tarballs at 
>> https://www.open-mpi.org/software/ompi/v4.1/ 
>>  ?
>  
> Yes; specifically I’m using the tarball from 
> https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.1.tar.bz2 
> 
>  
> John

Re: [OMPI users] [EXTERNAL] Linker errors in Fedora 34 Docker container

2021-05-26 Thread Pritchard Jr., Howard via users 
Hi John,

I don’t like this in the make output:


../../libtool: line 5705: find: command not found

Maybe you need to install findutils or relevant fedora rpm in your container?

Howard


From: John Haiducek 
Date: Wednesday, May 26, 2021 at 7:29 AM
To: "Pritchard Jr., Howard" , "users@lists.open-mpi.org" 

Subject: Re: [EXTERNAL] [OMPI users] Linker errors in Fedora 34 Docker container




On May 25, 2021, at 6:53 PM, Pritchard Jr., Howard 
mailto:howa...@lanl.gov>> wrote:

In your build area, do you see any .lo files in opal/util/coeval?

That directory doesn’t exist in my build area. In opal/util/keyval I have 
keyval_lex.lo.



Which compiler are you using?

gcc 11.1.1


 Also, are you building from the tarballs at 
https://www.open-mpi.org/software/ompi/v4.1/ ?

Yes; specifically I’m using the tarball from 
https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.1.tar.bz2

John

Re: [OMPI users] [EXTERNAL] Linker errors in Fedora 34 Docker container

2021-05-26 Thread John Haiducek via users 


> On May 25, 2021, at 6:53 PM, Pritchard Jr., Howard  > wrote:
>  
> In your build area, do you see any .lo files in opal/util/coeval?

That directory doesn’t exist in my build area. In opal/util/keyval I have 
keyval_lex.lo.

>  
> Which compiler are you using?

gcc 11.1.1

>  Also, are you building from the tarballs at 
> https://www.open-mpi.org/software/ompi/v4.1/ 
>  ?

Yes; specifically I’m using the tarball from 
https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.1.tar.bz2 


John

Re: [OMPI users] Linker errors in Fedora 34 Docker container

2021-05-26 Thread John Haiducek via users 
On May 25, 2021, at 8:33 PM, Jeff Squyres (jsquyres)  wrote:

Can you supply all the information requested here:


    https://www.open-mpi.org/community/help/Sure:OpenMPI version: 4.1.1Full output from ./configure and ‘make all' are attached. I did not run ‘make install’ since ‘make all’ failed.John

config.out.bz2
Description: BZip2 compressed data


make.out.bz2
Description: BZip2 compressed data