Re: [OMPI users] Fwd: Make All error regarding either "Conflicting" or "Previous Declaration" among others

2017-09-27 Thread Aragorn Inocencio 
Good morning Jeff,

Yes, I was also watching that thread for any developments as it's pretty
much the same scenario.

On Sep 27, 2017 11:49 PM, "Jeff Squyres (jsquyres)" 
wrote:

Check out this thread on the users archive:

https://www.mail-archive.com/users@lists.open-mpi.org/msg31602.html

including Marco's reply (Marco is the Cygwin Open MPI package maintainer).


> On Sep 27, 2017, at 1:21 AM, Aragorn Inocencio <
aragorn.inocen...@gmail.com> wrote:
>
> Good afternoon guys,
>
> As instructed I have attached my log files for the configure, make, and
make install functions. Do you think there is hope for me getting this to
run in Windows via cygwin?
>
> On Fri, Sep 22, 2017 at 5:30 AM, Aragorn Inocencio <
aragorn.inocen...@gmail.com> wrote:
> Good morning,
>
> Thanks for the input Jeff; yes I am still doing this in Windows via
cygwin. I currently do not have a Linux machine.
>
> Thanks Gus, I will use those commands to build the logs. I assume I will
have to do a MAKE CLEAN before I try again right? I will try again later
tonight.
>
>
> On Sep 22, 2017 1:40 AM, "Gus Correa"  wrote:
> On 09/21/2017 11:26 AM, Aragorn Inocencio wrote:
> Hi, sorry about the mixup earlier.  But I have recently tried installing
openmpi 3.0.0 using the instructions I found in the Reef3D manual (attached
below), so
>
> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran
--prefix=/usr/local/openmpi
>
> throws no errors, but again when I run the "make all" command next I am
getting quite a few errors, to name a few:
>
>  1. #warning "fd_set and associated macros have been defined in sys/types
>  2. error: redefinition of struct hostent
>  3. A bunch of other errors similar to 2
>  4. A bunch of errors saying, "conflicting types for 'accept' bind,
> connect etc.
>  5. "Expected declaration specifiers or '...' before '("
>  6. previous declaration of various functions
>
>
> then all the way at the end it gives me an Error 1.
>
> I'd like to apologize for my ignorance as I really have no background in
this area; I don't even know how to print all the errors to a txt file.
>
> ** If using sh/bash:
>
> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran
--prefix=/usr/local/openmpi 2>&1 | tee my_configure.log
>
> make 2>&1 | tee my_make.log
>
> make install 2>&1 | tee my_make_install.log
>
> ** If using csh/tcsh:
>
> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran
--prefix=/usr/local/openmpi  |& tee my_configure.log
>
> make |& tee my_make.log
>
> make install |& tee my_make_install.log
>
> I hope this helps,
> Gus Correa
>
> For what it's worth I have attached the config.log file.
>
> ​Inline image 1
>
>
>
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>
>
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>
>
>
>
> --
> Ismael Aragorn D. Inocencio
> Civil Engineer
> ___
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> users@lists.open-mpi.org
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--
Jeff Squyres
jsquy...@cisco.com

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Re: [OMPI users] Fwd: Make All error regarding either "Conflicting" or "Previous Declaration" among others

2017-09-27 Thread Jeff Squyres (jsquyres) 
Check out this thread on the users archive:

https://www.mail-archive.com/users@lists.open-mpi.org/msg31602.html

including Marco's reply (Marco is the Cygwin Open MPI package maintainer).


> On Sep 27, 2017, at 1:21 AM, Aragorn Inocencio  
> wrote:
> 
> Good afternoon guys,
> 
> As instructed I have attached my log files for the configure, make, and make 
> install functions. Do you think there is hope for me getting this to run in 
> Windows via cygwin?
> 
> On Fri, Sep 22, 2017 at 5:30 AM, Aragorn Inocencio 
>  wrote:
> Good morning,
> 
> Thanks for the input Jeff; yes I am still doing this in Windows via cygwin. I 
> currently do not have a Linux machine.
> 
> Thanks Gus, I will use those commands to build the logs. I assume I will have 
> to do a MAKE CLEAN before I try again right? I will try again later tonight.
> 
> 
> On Sep 22, 2017 1:40 AM, "Gus Correa"  wrote:
> On 09/21/2017 11:26 AM, Aragorn Inocencio wrote:
> Hi, sorry about the mixup earlier.  But I have recently tried installing 
> openmpi 3.0.0 using the instructions I found in the Reef3D manual (attached 
> below), so
> 
> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran 
> --prefix=/usr/local/openmpi
> 
> throws no errors, but again when I run the "make all" command next I am 
> getting quite a few errors, to name a few:
> 
>  1. #warning "fd_set and associated macros have been defined in sys/types
>  2. error: redefinition of struct hostent
>  3. A bunch of other errors similar to 2
>  4. A bunch of errors saying, "conflicting types for 'accept' bind,
> connect etc.
>  5. "Expected declaration specifiers or '...' before '("
>  6. previous declaration of various functions
> 
> 
> then all the way at the end it gives me an Error 1.
> 
> I'd like to apologize for my ignorance as I really have no background in this 
> area; I don't even know how to print all the errors to a txt file.
> 
> ** If using sh/bash:
> 
> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran 
> --prefix=/usr/local/openmpi 2>&1 | tee my_configure.log
> 
> make 2>&1 | tee my_make.log
> 
> make install 2>&1 | tee my_make_install.log
> 
> ** If using csh/tcsh:
> 
> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran 
> --prefix=/usr/local/openmpi  |& tee my_configure.log
> 
> make |& tee my_make.log
> 
> make install |& tee my_make_install.log
> 
> I hope this helps,
> Gus Correa
> 
> For what it's worth I have attached the config.log file.
> 
> ​Inline image 1
> 
> 
> 
> ___
> users mailing list
> users@lists.open-mpi.org
> https://lists.open-mpi.org/mailman/listinfo/users
> 
> 
> ___
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> users@lists.open-mpi.org
> https://lists.open-mpi.org/mailman/listinfo/users
> 
> 
> 
> 
> -- 
> Ismael Aragorn D. Inocencio
> Civil Engineer
> ___
> users mailing list
> users@lists.open-mpi.org
> https://lists.open-mpi.org/mailman/listinfo/users


-- 
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jsquy...@cisco.com

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Re: [OMPI users] Fwd: Make All error regarding either "Conflicting" or "Previous Declaration" among others

2017-09-21 Thread Aragorn Inocencio 
Good morning,

Thanks for the input Jeff; yes I am still doing this in Windows via cygwin.
I currently do not have a Linux machine.

Thanks Gus, I will use those commands to build the logs. I assume I will
have to do a MAKE CLEAN before I try again right? I will try again later
tonight.


On Sep 22, 2017 1:40 AM, "Gus Correa"  wrote:

On 09/21/2017 11:26 AM, Aragorn Inocencio wrote:

> Hi, sorry about the mixup earlier.  But I have recently tried installing
> openmpi 3.0.0 using the instructions I found in the Reef3D manual (attached
> below), so
>
> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran
> --prefix=/usr/local/openmpi
>
> throws no errors, but again when I run the "make all" command next I am
> getting quite a few errors, to name a few:
>
>  1. #warning "fd_set and associated macros have been defined in sys/types
>  2. error: redefinition of struct hostent
>  3. A bunch of other errors similar to 2
>  4. A bunch of errors saying, "conflicting types for 'accept' bind,
> connect etc.
>  5. "Expected declaration specifiers or '...' before '("
>  6. previous declaration of various functions
>
>
> then all the way at the end it gives me an Error 1.
>
> I'd like to apologize for my ignorance as I really have no background in
> this area; I don't even know how to print all the errors to a txt file.
>

** If using sh/bash:

./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran
--prefix=/usr/local/openmpi 2>&1 | tee my_configure.log

make 2>&1 | tee my_make.log

make install 2>&1 | tee my_make_install.log

** If using csh/tcsh:

./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran
--prefix=/usr/local/openmpi  |& tee my_configure.log

make |& tee my_make.log

make install |& tee my_make_install.log

I hope this helps,
Gus Correa

For what it's worth I have attached the config.log file.
>
> ​Inline image 1
>
>
>
> ___
> users mailing list
> users@lists.open-mpi.org
> https://lists.open-mpi.org/mailman/listinfo/users
>
>
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Re: [OMPI users] Fwd: Make All error regarding either "Conflicting" or "Previous Declaration" among others

2017-09-21 Thread Gus Correa 

On 09/21/2017 11:26 AM, Aragorn Inocencio wrote:
Hi, sorry about the mixup earlier.  But I have recently tried installing 
openmpi 3.0.0 using the instructions I found in the Reef3D manual 
(attached below), so


./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran 
--prefix=/usr/local/openmpi


throws no errors, but again when I run the "make all" command next I am 
getting quite a few errors, to name a few:


 1. #warning "fd_set and associated macros have been defined in sys/types
 2. error: redefinition of struct hostent
 3. A bunch of other errors similar to 2
 4. A bunch of errors saying, "conflicting types for 'accept' bind,
connect etc.
 5. "Expected declaration specifiers or '...' before '("
 6. previous declaration of various functions

then all the way at the end it gives me an Error 1.

I'd like to apologize for my ignorance as I really have no background in 
this area; I don't even know how to print all the errors to a txt file.


** If using sh/bash:

./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran 
--prefix=/usr/local/openmpi 2>&1 | tee my_configure.log


make 2>&1 | tee my_make.log

make install 2>&1 | tee my_make_install.log

** If using csh/tcsh:

./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran 
--prefix=/usr/local/openmpi  |& tee my_configure.log


make |& tee my_make.log

make install |& tee my_make_install.log

I hope this helps,
Gus Correa


For what it's worth I have attached the config.log file.

​Inline image 1


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Re: [OMPI users] Fwd: Make All error regarding either "Conflicting" or "Previous Declaration" among others

2017-09-21 Thread Jeff Squyres (jsquyres) 
> On Sep 21, 2017, at 11:26 AM, Aragorn Inocencio  
> wrote:
> 
> Hi, sorry about the mixup earlier.  But I have recently tried installing 
> openmpi 3.0.0 using the instructions I found in the Reef3D manual (attached 
> below), so 
> 
> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran 
> --prefix=/usr/local/openmpi
> 
> throws no errors, but again when I run the "make all" command next I am 
> getting quite a few errors, to name a few:
> 
>   • #warning "fd_set and associated macros have been defined in sys/types
>   • error: redefinition of struct hostent
>   • A bunch of other errors similar to 2
>   • A bunch of errors saying, "conflicting types for 'accept' bind, 
> connect etc.
>   • "Expected declaration specifiers or '...' before '("
>   • previous declaration of various functions
> then all the way at the end it gives me an Error 1.
> 
> I'd like to apologize for my ignorance as I really have no background in this 
> area; I don't even know how to print all the errors to a txt file.  For what 
> it's worth I have attached the config.log file.

No worries; we're here to help.

If you're getting build errors, we'll need to see your build logs.  See 
https://www.open-mpi.org/community/help/ for some help gathering the 
information we'll need.

Is this still on Windows, or is this on Linux?

Open MPI unfortunately no longer supports Windows -- if you're getting build 
errors on Windows, that might be expected (since we haven't tried to build on 
Windows in ... a long time).

-- 
Jeff Squyres
jsquy...@cisco.com

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Re: [OMPI users] Fwd: Make All error regarding either "Conflicting" or "Previous Declaration" among others

2017-09-19 Thread Aragorn Inocencio 
. . .  My sincerest apologies, I have gotten utterly mixed up; this is all
new territory for me.

On Tue, Sep 19, 2017 at 10:47 PM, r...@open-mpi.org  wrote:

> Err...you might want to ask the MPICH folks. This is the Open MPI mailing
> list :-)
>
> On Sep 19, 2017, at 7:38 AM, Aragorn Inocencio <
> aragorn.inocen...@gmail.com> wrote:
>
> Good evening,
>
> Thank you for taking the time to develop and assist in the use of this
> tool.
>
> I am trying to install the latest mpich-3.2 version to run Reef3D and my
> current setup is as follows (sorry I don't know which data is relevant so
> I'm including as much as possible):
>
>
>- Windows 7 Professional SP 1
>- Installed cygwin using the instructions from the Reef3D manual
>- C compiler previously installed on my laptop is Dev C++ 5.8.2, with
>the Compiler Options saying "Compiler set to configure" "TDM-GCC 4.8.1
>64-bit Release"
>- echo $shell throws me "/bin/bash"
>
> So I have successfully done the configure step (step d) in the readme, but
> running the make command gives me various errors such as:
>
>- error: redefinition of ‘struct hostent’
>- arning: #warning "fd_set and associated macros have been defined in
>sys/types.  This can cause runtime problems with W32 sockets" [-Wcpp]
>- /usr/include/w32api/winsock2.h:976:34: error: conflicting types for
>‘connect’
>
> etc. The main logs are attached for reference as instructed in the readme;
> however I could not find mpich-3.2/src/pm/hydra/to
> ols/topo/hwloc/hwloc/config.log in the designated folder.  The mv.txt is
> the output for when running the make V=1 command, so I didn't overwrite the
> previous m.txt
>
> Much appreciated.
> --
> Ismael Aragorn D. Inocencio
> Civil Engineer
>
>
>
> --
> Ismael Aragorn D. Inocencio
> Civil Engineer
> _
> __
> users mailing list
> users@lists.open-mpi.org
> https://lists.open-mpi.org/mailman/listinfo/users
>
>
>
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>



-- 
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Civil Engineer
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Re: [OMPI users] Fwd: Make All error regarding either "Conflicting" or "Previous Declaration" among others

2017-09-19 Thread r...@open-mpi.org 
Err...you might want to ask the MPICH folks. This is the Open MPI mailing list 
:-)

> On Sep 19, 2017, at 7:38 AM, Aragorn Inocencio  
> wrote:
> 
> Good evening,
> 
> Thank you for taking the time to develop and assist in the use of this tool.
> 
> I am trying to install the latest mpich-3.2 version to run Reef3D and my 
> current setup is as follows (sorry I don't know which data is relevant so I'm 
> including as much as possible):
> 
> Windows 7 Professional SP 1
> Installed cygwin using the instructions from the Reef3D manual
> C compiler previously installed on my laptop is Dev C++ 5.8.2, with the 
> Compiler Options saying "Compiler set to configure" "TDM-GCC 4.8.1 64-bit 
> Release"
> echo $shell throws me "/bin/bash"
> So I have successfully done the configure step (step d) in the readme, but 
> running the make command gives me various errors such as: 
> error: redefinition of ‘struct hostent’
> arning: #warning "fd_set and associated macros have been defined in 
> sys/types.  This can cause runtime problems with W32 sockets" [-Wcpp]
> /usr/include/w32api/winsock2.h:976:34: error: conflicting types for ‘connect’
> etc. The main logs are attached for reference as instructed in the readme; 
> however I could not find 
> mpich-3.2/src/pm/hydra/tools/topo/hwloc/hwloc/config.log in the designated 
> folder.  The mv.txt is the output for when running the make V=1 command, so I 
> didn't overwrite the previous m.txt
> 
> Much appreciated.
> -- 
> Ismael Aragorn D. Inocencio
> Civil Engineer
> 
> 
> 
> -- 
> Ismael Aragorn D. Inocencio
> Civil Engineer
>  logs.zip>___
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