[QE-users] reflection-absorption IR spectra

2021-01-07 Thread Michal Krompiec
Hello,

In Reflection-Absorption IR (IR at grazing incidence), only modes that
induce a nonzero dipole in the direction normal to the surface contribute
to the spectrum. Is it possible to simulate this in QE?
In other words: how do I calculate the IR spectrum of flexural phonons of a
2D system?

Best regards,

Michal Krompiec, Merck KGaA
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Re: [QE-users] convergence problem for a molecule

2021-01-07 Thread Dr. K. C. Bhamu
Dear Dr. Giuseppe
You suggestion worked for me.
 "occupations='smearing', smearing='gaussian', degauss=0.01,"
The structure even converged when I excluded the vdw_corr tag.

Thank you very much
Bhamu



On Tue, Jan 5, 2021 at 11:48 PM Giuseppe Mattioli <
giuseppe.matti...@ism.cnr.it> wrote:

>
> Dear K C Bhamu
> When you simulate molecules having a large amount of rotational
> degrees of freedom, I recommend to use first a tight-binding or
> empirical tool to explore configurations, to avoid high-energy
> structures. The following one is excellent, very easy to use and very
> fast to run.
>
> https://xtb-docs.readthedocs.io/en/latest/contents.html
>
> This said, your starting configuration was trapped in an unfortunate
> structure where two sp2 C atoms (numbers 33 and 35) were twisted
> instead of being planar. You probably removed two H atoms from sp3
> atoms without relaxing them. The following structure, simply optimized
> with a force-field, should not give problems (but I have not run the
> calculation...).
>
> 45
>  Energy:  52.7144978
> H  8.48608   10.45663   13.88529
> C 10.12285   10.35161   10.80715
> H  9.750819.36965   10.43974
> C 11.49997   10.08512   11.39597
> H 12.307569.85722   10.70499
> C 11.75878   10.11652   12.72470
> C 10.64679   10.32692   13.74405
> H 10.743179.58583   14.56637
> H 10.73789   11.33550   14.19281
> C  9.24848   10.13193   13.14479
> H  9.072919.05796   12.91129
> C  9.14194   10.92818   11.85742
> H  8.10293   10.88215   11.46867
> H  9.38712   11.98966   12.08748
> C  8.94637   11.522018.84268
> C 10.25893   11.302879.59702
> H  9.13189   12.174917.96386
> H  8.19218   12.022979.48301
> H  8.54193   10.551558.48460
> H 10.65844   12.286369.92936
> H 10.98302   10.862138.87653
> C 13.174409.88279   13.22285
> H 13.118889.04537   13.95078
> H 13.837079.54798   12.39520
> C 15.69736   11.92481   15.44478
> H 16.74498   11.70891   15.74860
> H 15.07047   11.97162   16.36387
> C 15.58617   13.25420   14.70482
> H 16.14427   13.14997   13.74597
> C 14.09237   13.52300   14.41126
> H 14.03472   14.35009   13.67327
> H 13.54419   13.83190   15.32752
> C 13.36446   12.32498   13.84523
> C 13.87547   11.06693   13.87464
> C 15.21374   10.78810   14.53332
> H 15.142949.87981   15.16991
> H 15.94984   10.58575   13.72543
> C 16.23591   15.73576   14.79615
> C 16.23058   14.39236   15.52642
> H 16.75074   16.49369   15.42343
> H 15.20340   16.09456   14.60831
> H 16.77780   15.64679   13.83071
> H 15.70219   14.50766   16.49821
> H 17.28870   14.12285   15.73764
> H 12.40535   12.52093   13.38556
>
> Finally,
>
> >   occupations='smearing',
> >   smearing='mv',
> >   degauss=0.005d0,
>
> This is just a fine way for me to calculate a bunch of unoccupied
> molecular orbitals, but there is no need to use 'mv', which is for
> metals and less stable than 'gaussian', suitable for an "insulator"
> such as your molecule. I would use instead
>
>  occupations='smearing', smearing='gaussian', degauss=0.01,
>
> HTH
> Giuseppe
>
>
> Quoting "Dr. K. C. Bhamu" :
>
> > Dear QE Users
> > I wish you all a very happy new year 2021!
> >
> > I am running a molecule  with QE_6.6  but facing a convergence problem.
> > I tried with and without 'local-TF' and both the options are not working.
> >
> > Could someone please have a look and suggest to me any solution?
> >
> >
> > 
> >  calculation = 'relax'
> > restart_mode = 'from_scratch'
> >   outdir = './tmp'
> >   pseudo_dir = '/home/kcbhamu/PPs'
> >   prefix = 'pwscf'
> > ! disk_io = 'none'
> >verbosity = 'default'
> >etot_conv_thr = 0.0001
> >forc_conv_thr = 0.001
> >nstep = 400
> >  tstress = .true.
> >  tprnfor = .true.
> >  /
> >
> > 
> >   ibrav=1,
> >   celldm(1)=47.2431531141d0,
> >   nat=45,
> >   ntyp=2,
> >   ecutwfc=65,
> >   ecutrho=650,
> >   occupations='smearing',
> >   smearing='mv',
> >   degauss=0.005d0,
> >  vdw_corr = 'DFT-D3'
> >  assume_isolated='mt'
> > /
> >
> > 
> > electron_maxstep=999
> >   conv_thr=1d-06,
> >   

Re: [QE-users] Error in routine cft_1z (3) stopped in DFTI_NUMBER_OF_TRANSFORMS

2021-01-07 Thread Paolo Giannozzi
On Wed, Jan 6, 2021 at 7:46 PM Daniel Marchand 
wrote:

> I'm trying again, it's not very clear to me why my files are being
> rejected.
>

if (epfl ) problems_with_attachments=.true.

I don't know why you get that error: it should not happen, but it must be
related to the rather extreme kind of parallelization you are using. You
are parallelizing over plane waves and FFTs on 27 processors, for a small
unit cell with many k-points. The code will be much faster with k-point
parallelization only.

Paolo


>
> -
> Daniel Marchand daniel.march...@gmail.com
> Ph.D candidate EDMX EPFL
>
> On Wed, Jan 6, 2021 at 1:34 PM Daniel Marchand 
> wrote:
>
>> Sorry, it looks like my attachment was flagged. I am trying again now
>> with individual files.
>>
>> Daniel
>>
>>
>> -
>> Daniel Marchand daniel.march...@gmail.com
>> Ph.D candidate EDMX EPFL
>>
>>
>> On Wed, Jan 6, 2021 at 1:32 PM Daniel Marchand 
>> wrote:
>>
>>> Sorry, it looks like my attachment was flagged. I am trying again now
>>> with individual files.
>>>
>>> Daniel
>>>
>>>
>>> -
>>> Daniel Marchand daniel.march...@gmail.com
>>> Ph.D candidate EDMX EPFL
>>>
>>> On Tue, Jan 5, 2021 at 2:28 PM Daniel Marchand <
>>> daniel.march...@gmail.com> wrote:
>>>
 Hi QE people,

 I'm hitting an unusual error, which I have never seen before and can't
 find any trace of in the mailing archive list. I'm not quite sure what I'm
 doing wrong. The settings I'm using seem reasonable, and for most of my
 calculations, they are fine. Yet, for a certain minority of my
 calculations, I get a complete failure with the error message in the title.
 If anyone has any insights, it would be much appreciated. I have copied the
 inputs/outputs of the calculation.

 Best,

 Daniel




 -
 Daniel Marchand daniel.march...@gmail.com
 Ph.D candidate EDMX EPFL

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-- 
Paolo Giannozzi, Dip. Scienze Matematiche Informatiche e Fisiche,
Univ. Udine, via delle Scienze 208, 33100 Udine, Italy
Phone +39-0432-558216, fax +39-0432-558222
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