Re: Out of memory exception

2021-02-19 Thread Christopher Schultz

Niranjan,

On 2/18/21 13:36, Niranjan Rao wrote:
First apologies for non tomcat question. I have seen that there is 
enough expertise here to provide hints and hints are what I am looking 
for to solve the problem and question is generic enough. I have tried 
researching problem to best of my abilities.


It all happens on Ubuntu 20.04 and JDK 15

We have a java program that regularly throws 
"java.lang.OutOfMemoryError: Java heap space" exception. Puzzling point 
is it happens only on one VM. We have a set of two VMs/boxes spawned 
from same AWS image. Machine class/region is exactly same and since they 
are from same image, they should be mostly identical except stuff like 
host name, ip address etc.


Number of tasks performed by VMs are comparable and not a significant 
difference. Yet, one VM never runs of out of memory and other one does. 
Sometimes it's as soon as half an hour after restarting the process 
while on the other box process is running for days and no issues.


I took memory dumps from both VMs and they look similar. Program is 
started with -Xmx1g flag and we have taken regular memory dumps. In many 
cases eclipse MAT reports total memory usage was less than 100MB when 
program crashed with out of memory exception.



Has anyone seen anything similar to this? Identical bits of code 
behaving differently? What else should I be looking for?


What is the load profile of each application/server? You said you aren't 
running Tomcat, but is load on each of the applications balanced in any 
way similar to how a web-application load-balancer would work? 
Sometimes, the answer is simply that one server is doing more work than 
the other.


We have two application servers which are "identical" except that only 
one of them handles our email queue.


Maybe though the "types" of tasks are the same for each server, one of 
them is getting unlucky and is handling a "big" task that fails each time?


Do you have any logging which would indicate which task, ro what kinds 
of tasks are failing?


Do you have a stack trace of the OOME? Do you have a bunch of them (from 
many separate events)? Do they all look the same?


The AWS images are the same, have you upgraded the OS on either one 
after initial launch, or do you always start fresh with the same image 
and no "apt-get update" on them. Same JVM and everything on each of them?


If you start with -Xmx1G then you should consider also using -Xms1G. IF 
you have a long-running process which you expect may take up 1G of heap 
space, go ahead and allocate it all at once instead of wasting time 
re-sizing the heap a bunch of times on your way up to 1G.


-chris

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Re: Out of memory exception

2021-02-18 Thread Niranjan Rao

On 2/18/21 12:53 PM, Shawn Heisey wrote:

On 2/18/2021 12:11 PM, Niranjan Rao wrote:
Thank you the response. This is not a web application, but a 
standalone java program. Hence I said it's not a tomcat question, but 
a generic JVM question. I have been researching about this a lot and 
based on many mails on this list, lot of people here know about 
internal behavior of JVM and specs lot better than I do.


Apologies for getting that wrong.

Is it a custom app or something that you downloaded and installed?  
Talk to whoever wrote it.  They will hopefully know what information 
is needed to troubleshoot further.


Is Java 15 required for the application to function?  If you can 
successfully use Java 11 or even Java 8, you'll be dealing with a far 
more stable platform.  Major show-stopper bugs in Java are rare, but 
they do happen.  I will warn you that although I do recommend 
downgrading Java for stability purposes, I do not hold out a lot of 
hope that it will solve this problem.


Which garbage collector are you using?  I would recommend one of the 
really stable collectors, like G1.  I wrote this wiki page a long time 
ago that includes garbage collection information for Solr ... I think 
it would apply well to any application where latency is important than 
throughput:


https://cwiki.apache.org/confluence/display/SOLR/ShawnHeisey

Thanks,
Shawn

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I tried talking to the author, myself - but not much luck. Anyways 
talking with self does not help with new ideas much ;)


We added lot of logging and wrote a simple throw away tool to analyze 
the logs. Even though task counts are similar, there were some time out 
errors that could be causing the leaks. Currently a patch is deployed 
and we are waiting to see if it has made any impact.


Interesting point was why is one machine getting brunt of bad things. 
May be we will drop the box and spawn another VM with the assumption 
that host could be heavily loaded or something similar not easily 
visible things going on.


Your blog entry is very informative. Thank you.


Regards,


Niranjan


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Re: Out of memory exception

2021-02-18 Thread Shawn Heisey

On 2/18/2021 12:11 PM, Niranjan Rao wrote:
Thank you the response. This is not a web application, but a standalone 
java program. Hence I said it's not a tomcat question, but a generic JVM 
question. I have been researching about this a lot and based on many 
mails on this list, lot of people here know about internal behavior of 
JVM and specs lot better than I do.


Apologies for getting that wrong.

Is it a custom app or something that you downloaded and installed?  Talk 
to whoever wrote it.  They will hopefully know what information is 
needed to troubleshoot further.


Is Java 15 required for the application to function?  If you can 
successfully use Java 11 or even Java 8, you'll be dealing with a far 
more stable platform.  Major show-stopper bugs in Java are rare, but 
they do happen.  I will warn you that although I do recommend 
downgrading Java for stability purposes, I do not hold out a lot of hope 
that it will solve this problem.


Which garbage collector are you using?  I would recommend one of the 
really stable collectors, like G1.  I wrote this wiki page a long time 
ago that includes garbage collection information for Solr ... I think it 
would apply well to any application where latency is important than 
throughput:


https://cwiki.apache.org/confluence/display/SOLR/ShawnHeisey

Thanks,
Shawn

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Re: Out of memory exception

2021-02-18 Thread Brian Wolfe
You need to monitor the JVM through something like visual VM or JConsole.
Monitor the heap space. Your gonna have to modify your code to help you
understand where the memory leak is occurring. The stack trace should give
you an idea of where in your code it is trying to allocate memory.

On Thu, Feb 18, 2021 at 2:12 PM Niranjan Rao  wrote:

> Hi Shawn
>
> Thank you the response. This is not a web application, but a standalone
> java program. Hence I said it's not a tomcat question, but a generic JVM
> question. I have been researching about this a lot and based on many
> mails on this list, lot of people here know about internal behavior of
> JVM and specs lot better than I do.
>
> Both the boxes are spawned from same AWS image, we build the image.
> There is no other difference. Both receive tasks over MQ.  Tasks could
> be slightly different - like for different users, number of entities
> user holds etc, but they should not be too different or kind of should
> average out in the long run. We have examined the data for the tasks and
> nothing unusual has come out so far.
>
> Regards,
>
> Niranjan
> On 2/18/21 10:59 AM, Shawn Heisey wrote:
>
> Regards,
>
> Niranjan
>
> > On 2/18/2021 11:36 AM, Niranjan Rao wrote:
> >> First apologies for non tomcat question. I have seen that there is
> >> enough expertise here to provide hints and hints are what I am
> >> looking for to solve the problem and question is generic enough. I
> >> have tried researching problem to best of my abilities.
> >
> > I believe you're right to think this isn't a tomcat question. There
> > are a lot of things it could be.  Tomcat is a *possible* source,
> > though I think the chance of that is low.  Without a LOT of info that
> > I would probably be useless at interpreting or asking for, it's
> > impossible to say for sure.
> >
> > With problems like this, it is normally the application running inside
> > Tomcat that has a problem, not Tomcat itself.  You're likely to get a
> > lot more useful information if you go to the people responsible for
> > those applications.
> >
> >> We have a java program that regularly throws
> >> "java.lang.OutOfMemoryError: Java heap space" exception. Puzzling
> >> point is it happens only on one VM. We have a set of two VMs/boxes
> >> spawned from same AWS image. Machine class/region is exactly same and
> >> since they are from same image, they should be mostly identical
> >> except stuff like host name, ip address etc.
> >>
> >> Number of tasks performed by VMs are comparable and not a significant
> >> difference. Yet, one VM never runs of out of memory and other one
> >> does. Sometimes it's as soon as half an hour after restarting the
> >> process while on the other box process is running for days and no
> >> issues.
> >
> > "Comparable" isn't "identical".
> >
> > Are they running the same apps?  Which apps are involved?  Is the one
> > that's throwing OOME handling substantially similar requests when
> > compared to one that doesn't?  Is the request rate nearly the same, or
> > is the problematic one handling a lot more?  Another applicable
> > question, also off topic for this mailing list:  Are the apps in both
> > cases configured identically?
> >
> >> I took memory dumps from both VMs and they look similar. Program is
> >> started with -Xmx1g flag and we have taken regular memory dumps. In
> >> many cases eclipse MAT reports total memory usage was less than 100MB
> >> when program crashed with out of memory exception.
> >
> > That's extremely odd, unless the application requested a REALLY big
> > chunk of memory such that the 100MB existing plus the new allocation
> > would be larger than the max heap size of 1GB.
> >
> > Do you have enough free memory that you could increase the max heap to
> > 2GB or beyond and see what happens?
> >
> >> Has anyone seen anything similar to this? Identical bits of code
> >> behaving differently? What else should I be looking for?
> >
> > Earlier you said "comparable" and now you're saying "identical". So I
> > have to ask ... which is it?  Remember that differences in
> > configurations, types of requests, and request load can lead to very
> > different requirements, even if the apps running inside Tomcat are the
> > same.
> >
> > Most of my experience in the Java world comes from Solr.  Apache Solr
> > is a servlet application, and ships with Jetty.  Tomcat is not usually
> > involved.  I joined this mailing list because I was responsible for
> > Tomcat servers running apps developed in-house, and every once in a
> > while, I needed to ask something tomcat-specific.
> >
> > Thanks,
> > Shawn
> >
> > -
> > To unsubscribe, e-mail: users-unsubscr...@tomcat.apache.org
> > For additional commands, e-mail: users-h...@tomcat.apache.org
> >
>
>
> -
> To unsubscribe, e-mail: users-unsubscr...@tomcat.apache.org
> For additional 

Re: Out of memory exception

2021-02-18 Thread Robert Turner
Have you tried enabling heap dumps on OOM exceptions (
https://docs.oracle.com/javase/8/docs/technotes/guides/troubleshoot/clopts001.html
; HeapDumpOnOutOfMemoryError) and then looking at the heap dump? It should
help you identify where the allocated heap is going to, and give you some
ideas of where to look next.


On Thu, Feb 18, 2021 at 2:12 PM Niranjan Rao  wrote:

> Hi Shawn
>
> Thank you the response. This is not a web application, but a standalone
> java program. Hence I said it's not a tomcat question, but a generic JVM
> question. I have been researching about this a lot and based on many
> mails on this list, lot of people here know about internal behavior of
> JVM and specs lot better than I do.
>
> Both the boxes are spawned from same AWS image, we build the image.
> There is no other difference. Both receive tasks over MQ.  Tasks could
> be slightly different - like for different users, number of entities
> user holds etc, but they should not be too different or kind of should
> average out in the long run. We have examined the data for the tasks and
> nothing unusual has come out so far.
>
> Regards,
>
> Niranjan
> On 2/18/21 10:59 AM, Shawn Heisey wrote:
>
> Regards,
>
> Niranjan
>
> > On 2/18/2021 11:36 AM, Niranjan Rao wrote:
> >> First apologies for non tomcat question. I have seen that there is
> >> enough expertise here to provide hints and hints are what I am
> >> looking for to solve the problem and question is generic enough. I
> >> have tried researching problem to best of my abilities.
> >
> > I believe you're right to think this isn't a tomcat question. There
> > are a lot of things it could be.  Tomcat is a *possible* source,
> > though I think the chance of that is low.  Without a LOT of info that
> > I would probably be useless at interpreting or asking for, it's
> > impossible to say for sure.
> >
> > With problems like this, it is normally the application running inside
> > Tomcat that has a problem, not Tomcat itself.  You're likely to get a
> > lot more useful information if you go to the people responsible for
> > those applications.
> >
> >> We have a java program that regularly throws
> >> "java.lang.OutOfMemoryError: Java heap space" exception. Puzzling
> >> point is it happens only on one VM. We have a set of two VMs/boxes
> >> spawned from same AWS image. Machine class/region is exactly same and
> >> since they are from same image, they should be mostly identical
> >> except stuff like host name, ip address etc.
> >>
> >> Number of tasks performed by VMs are comparable and not a significant
> >> difference. Yet, one VM never runs of out of memory and other one
> >> does. Sometimes it's as soon as half an hour after restarting the
> >> process while on the other box process is running for days and no
> >> issues.
> >
> > "Comparable" isn't "identical".
> >
> > Are they running the same apps?  Which apps are involved?  Is the one
> > that's throwing OOME handling substantially similar requests when
> > compared to one that doesn't?  Is the request rate nearly the same, or
> > is the problematic one handling a lot more?  Another applicable
> > question, also off topic for this mailing list:  Are the apps in both
> > cases configured identically?
> >
> >> I took memory dumps from both VMs and they look similar. Program is
> >> started with -Xmx1g flag and we have taken regular memory dumps. In
> >> many cases eclipse MAT reports total memory usage was less than 100MB
> >> when program crashed with out of memory exception.
> >
> > That's extremely odd, unless the application requested a REALLY big
> > chunk of memory such that the 100MB existing plus the new allocation
> > would be larger than the max heap size of 1GB.
> >
> > Do you have enough free memory that you could increase the max heap to
> > 2GB or beyond and see what happens?
> >
> >> Has anyone seen anything similar to this? Identical bits of code
> >> behaving differently? What else should I be looking for?
> >
> > Earlier you said "comparable" and now you're saying "identical". So I
> > have to ask ... which is it?  Remember that differences in
> > configurations, types of requests, and request load can lead to very
> > different requirements, even if the apps running inside Tomcat are the
> > same.
> >
> > Most of my experience in the Java world comes from Solr.  Apache Solr
> > is a servlet application, and ships with Jetty.  Tomcat is not usually
> > involved.  I joined this mailing list because I was responsible for
> > Tomcat servers running apps developed in-house, and every once in a
> > while, I needed to ask something tomcat-specific.
> >
> > Thanks,
> > Shawn
> >
> > -
> > To unsubscribe, e-mail: users-unsubscr...@tomcat.apache.org
> > For additional commands, e-mail: users-h...@tomcat.apache.org
> >
>
>
> -
> To unsubscribe, e-mail: 

Re: Out of memory exception

2021-02-18 Thread Niranjan Rao

Hi Shawn

Thank you the response. This is not a web application, but a standalone 
java program. Hence I said it's not a tomcat question, but a generic JVM 
question. I have been researching about this a lot and based on many 
mails on this list, lot of people here know about internal behavior of 
JVM and specs lot better than I do.


Both the boxes are spawned from same AWS image, we build the image. 
There is no other difference. Both receive tasks over MQ.  Tasks could 
be slightly different - like for different users, number of entities 
user holds etc, but they should not be too different or kind of should 
average out in the long run. We have examined the data for the tasks and 
nothing unusual has come out so far.


Regards,

Niranjan
On 2/18/21 10:59 AM, Shawn Heisey wrote:

Regards,

Niranjan


On 2/18/2021 11:36 AM, Niranjan Rao wrote:
First apologies for non tomcat question. I have seen that there is 
enough expertise here to provide hints and hints are what I am 
looking for to solve the problem and question is generic enough. I 
have tried researching problem to best of my abilities.


I believe you're right to think this isn't a tomcat question. There 
are a lot of things it could be.  Tomcat is a *possible* source, 
though I think the chance of that is low.  Without a LOT of info that 
I would probably be useless at interpreting or asking for, it's 
impossible to say for sure.


With problems like this, it is normally the application running inside 
Tomcat that has a problem, not Tomcat itself.  You're likely to get a 
lot more useful information if you go to the people responsible for 
those applications.


We have a java program that regularly throws 
"java.lang.OutOfMemoryError: Java heap space" exception. Puzzling 
point is it happens only on one VM. We have a set of two VMs/boxes 
spawned from same AWS image. Machine class/region is exactly same and 
since they are from same image, they should be mostly identical 
except stuff like host name, ip address etc.


Number of tasks performed by VMs are comparable and not a significant 
difference. Yet, one VM never runs of out of memory and other one 
does. Sometimes it's as soon as half an hour after restarting the 
process while on the other box process is running for days and no 
issues.


"Comparable" isn't "identical".

Are they running the same apps?  Which apps are involved?  Is the one 
that's throwing OOME handling substantially similar requests when 
compared to one that doesn't?  Is the request rate nearly the same, or 
is the problematic one handling a lot more?  Another applicable 
question, also off topic for this mailing list:  Are the apps in both 
cases configured identically?


I took memory dumps from both VMs and they look similar. Program is 
started with -Xmx1g flag and we have taken regular memory dumps. In 
many cases eclipse MAT reports total memory usage was less than 100MB 
when program crashed with out of memory exception.


That's extremely odd, unless the application requested a REALLY big 
chunk of memory such that the 100MB existing plus the new allocation 
would be larger than the max heap size of 1GB.


Do you have enough free memory that you could increase the max heap to 
2GB or beyond and see what happens?


Has anyone seen anything similar to this? Identical bits of code 
behaving differently? What else should I be looking for?


Earlier you said "comparable" and now you're saying "identical". So I 
have to ask ... which is it?  Remember that differences in 
configurations, types of requests, and request load can lead to very 
different requirements, even if the apps running inside Tomcat are the 
same.


Most of my experience in the Java world comes from Solr.  Apache Solr 
is a servlet application, and ships with Jetty.  Tomcat is not usually 
involved.  I joined this mailing list because I was responsible for 
Tomcat servers running apps developed in-house, and every once in a 
while, I needed to ask something tomcat-specific.


Thanks,
Shawn

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Re: Out of memory exception

2021-02-18 Thread Shawn Heisey

On 2/18/2021 11:36 AM, Niranjan Rao wrote:
First apologies for non tomcat question. I have seen that there is 
enough expertise here to provide hints and hints are what I am looking 
for to solve the problem and question is generic enough. I have tried 
researching problem to best of my abilities.


I believe you're right to think this isn't a tomcat question.  There are 
a lot of things it could be.  Tomcat is a *possible* source, though I 
think the chance of that is low.  Without a LOT of info that I would 
probably be useless at interpreting or asking for, it's impossible to 
say for sure.


With problems like this, it is normally the application running inside 
Tomcat that has a problem, not Tomcat itself.  You're likely to get a 
lot more useful information if you go to the people responsible for 
those applications.


We have a java program that regularly throws 
"java.lang.OutOfMemoryError: Java heap space" exception. Puzzling point 
is it happens only on one VM. We have a set of two VMs/boxes spawned 
from same AWS image. Machine class/region is exactly same and since they 
are from same image, they should be mostly identical except stuff like 
host name, ip address etc.


Number of tasks performed by VMs are comparable and not a significant 
difference. Yet, one VM never runs of out of memory and other one does. 
Sometimes it's as soon as half an hour after restarting the process 
while on the other box process is running for days and no issues.


"Comparable" isn't "identical".

Are they running the same apps?  Which apps are involved?  Is the one 
that's throwing OOME handling substantially similar requests when 
compared to one that doesn't?  Is the request rate nearly the same, or 
is the problematic one handling a lot more?  Another applicable 
question, also off topic for this mailing list:  Are the apps in both 
cases configured identically?


I took memory dumps from both VMs and they look similar. Program is 
started with -Xmx1g flag and we have taken regular memory dumps. In many 
cases eclipse MAT reports total memory usage was less than 100MB when 
program crashed with out of memory exception.


That's extremely odd, unless the application requested a REALLY big 
chunk of memory such that the 100MB existing plus the new allocation 
would be larger than the max heap size of 1GB.


Do you have enough free memory that you could increase the max heap to 
2GB or beyond and see what happens?


Has anyone seen anything similar to this? Identical bits of code 
behaving differently? What else should I be looking for?


Earlier you said "comparable" and now you're saying "identical".  So I 
have to ask ... which is it?  Remember that differences in 
configurations, types of requests, and request load can lead to very 
different requirements, even if the apps running inside Tomcat are the same.


Most of my experience in the Java world comes from Solr.  Apache Solr is 
a servlet application, and ships with Jetty.  Tomcat is not usually 
involved.  I joined this mailing list because I was responsible for 
Tomcat servers running apps developed in-house, and every once in a 
while, I needed to ask something tomcat-specific.


Thanks,
Shawn

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Re: Out of memory exception

2014-01-23 Thread Daniel Mikusa
On Jan 23, 2014, at 7:43 AM, Randeep randeep...@gmail.com wrote:

 Hi,
 
 I'm getting out of memory exception errors.
 
 Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap space
at java.util.Arrays.copyOf(Arrays.java:2882)
at
 java.lang.AbstractStringBuilder.expandCapacity(AbstractStringBuilder.java:100)
at
 java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:572)
at java.lang.StringBuffer.append(StringBuffer.java:320)
at org.json.JSONArray.toString(JSONArray.java:834)
at org.json.JSONObject.valueToString(JSONObject.java:1359)
at org.json.JSONObject.toString(JSONObject.java:1233)
at com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503)
at com.xxx.xxx.servlet.WServlet$1.run(WServlet.java:414)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
 
 Is there anyway to see currently set jvm heap size details? Any linux
 commands.

If you run “ps” and “grep” for something like “java”, “catalina”, etc.. you can 
find your running Tomcat process.  On Linux this should show the full command 
that was run.

Alternatively, you could use “jinfo pid”.  That will dump a bunch of info 
including the VM Flags.

 
 I have tried creating setenv.sh and putting the new parameters in it. but
 echo $JAVA_OPTS was not giving any value.

How did you install Tomcat?  Did you use your distro’s package manager?  Did 
you download from tomcat.apache.org?

How are you starting your server?  Are you using the included start script?  
Are you using an init.d (or other) script you created?  Are you using commons 
daemon?

 So I have put in .bash_profile and run it.

Don’t do that.  Why would you want these in your bash profile?

 Then restarted tomcat6.

What version exactly?  There are quite a few.

 this is the line I added in .bash_profile.
 JAVA_OPTS=-Xms256m -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log”

Again, don’t put this in your profile.

 Also I checked in heap.log where catelina.out can be found. But its not
 created. Then I touched and restarted. But that also didn't work.
 
 What is the right way to do this?

If you downloaded from tomcat.apache.org and installed from the zip, you’d put 
them in bin/setenv.sh and it would work.  If you’re using a packaged version of 
Tomcat from your Linux distro, then it may well be different.  If you gave more 
details, perhaps someone on the list could help.

Dan

 
 -- 
 Randeep
 Mob: +919447831699[kerala]
 Mob: +919880050349[B'lore]
 I blog here:
 http://www.randeeppr.me/
 Follow me Here:
 http://twitter.com/Randeeppr
 Poke me here!
 http://www.facebook.com/Randeeppr
 A little Linux Help
 http://www.linuxhelp.in/
 Work profile:
 http://in.linkedin.com/in/randeeppr


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Re: Out of memory exception

2014-01-23 Thread Christopher Schultz
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Randeep,

On 1/23/14, 7:43 AM, Randeep wrote:
 I'm getting out of memory exception errors.

:(

 Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap
 space at java.util.Arrays.copyOf(Arrays.java:2882) at 
 java.lang.AbstractStringBuilder.expandCapacity(AbstractStringBuilder.java:100)

 
at
 java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:572)

 
at java.lang.StringBuffer.append(StringBuffer.java:320)
 at org.json.JSONArray.toString(JSONArray.java:834) at
 org.json.JSONObject.valueToString(JSONObject.java:1359) at
 org.json.JSONObject.toString(JSONObject.java:1233) at
 com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503) at
 com.xxx.xxx.servlet.WServlet$1.run(WServlet.java:414) at
 java.util.TimerThread.mainLoop(Timer.java:512) at
 java.util.TimerThread.run(Timer.java:462)

If you are trying to serialize huge JSON objects, this is going to
happen. I'm not sure if JSON is as smart as the Java Serialization
engine, but if you have a circular-reference in your object graph, I'd
be willing to bet that the JSON serializer will run forever and
exhaust your heap.

It's also possible that you simply have a tiny heap and need more,
especially if you aren't currently setting any heap parameters.

 Is there anyway to see currently set jvm heap size details? Any
 linux commands.

You can attach any profiler to your app. Good luck catching this in
the act, though, in production.

You can also use jmap -heap which comes with the JDK. Just point it
at a process and you'll get a heap summary from a running JVM. Make
sure your JVM and jmap version match.

 I have tried creating setenv.sh and putting the new parameters in
 it. but echo $JAVA_OPTS was not giving any value.

setenv.sh is run during Tomcat startup. Running echo $JAVA_OPTS from
the command-line isn't going to reveal anything. What you want to do
is modify setenv.sh, re-launch Tomcat, and then look at the process
command line... something like this:

$ ps aux | grep Bootstrap

This should give you the whole command-line for Tomcat, and you can
verify that your heap options have been set.

 So I have put in .bash_profile and run it. Then restarted tomcat6.

Don't do that: it will only work if you login using bash, and it won't
work for other users you may have to restart Tomcat.

 this is the line I added in .bash_profile. JAVA_OPTS=-Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log

You'll need to export JAVA_OPTS, otherwise it won't do anything for you.

- -chris
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Version: GnuPG v1
Comment: GPGTools - http://gpgtools.org
Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/

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Re: Out of memory exception

2014-01-23 Thread Randeep
Hi all,
Thanks a lot for valuable points. Here the information you guys asked and
the changes I made.

OS : CentOS release 5.4 (Final)
httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+ apache-tomcat-6.0.37

I installed httpd using yum.
Downloaded tomcat from Apache as compressed archive(tar.gz)

I'm using following startup script.
[root@server ~]# cat /etc/init.d/tomcat6
#!/bin/bash
# description: Tomcat Start Stop Restart
# processname: tomcat
# chkconfig: 234 20 80
JAVA_HOME=/usr/java/default
export JAVA_HOME
PATH=$JAVA_HOME/bin:$PATH
export PATH
CATALINA_HOME=/usr/share/apache-tomcat-6.0.37
case $1 in
start)
sh $CATALINA_HOME/bin/startup.sh
;;
stop)
sh $CATALINA_HOME/bin/shutdown.sh
;;
restart)
sh $CATALINA_HOME/bin/shutdown.sh
sh $CATALINA_HOME/bin/startup.sh
;;
esac
exit 0

As you said, I removed the JAVA_OPTS declaration from .bash_profile and I
have created setenv.sh and set JAVA_OPTS in it.
[root@server bin]# pwd
/usr/share/apache-tomcat-6.0.37/bin

[root@server bin]# cat setenv.sh
export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log'

Now it shows in grep.
[root@server bin]# ps aux | grep Bootstrap
root  1100 33.7  5.4 707052 95240 pts/0Sl   11:29   0:06
/usr/java/default/bin/java
-Djava.util.logging.config.file=/usr/share/apache-tomcat-6.0.37/conf/logging.properties
-Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Xms256m
-Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log
-Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed -classpath
/usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar
-Dcatalina.base=/usr/share/apache-tomcat-6.0.37
-Dcatalina.home=/usr/share/apache-tomcat-6.0.37
-Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp
org.apache.catalina.startup.Bootstrap start
root  1158  0.0  0.0   3932   692 pts/0R+   11:29   0:00 grep
Bootstrap
[root@server bin]#

But nothing came in heap.log. So I better monitor this and if I get the OOM
again I have to increase Max limit!


On Thu, Jan 23, 2014 at 8:50 PM, Christopher Schultz 
ch...@christopherschultz.net wrote:

 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA256

 Randeep,

 On 1/23/14, 7:43 AM, Randeep wrote:
  I'm getting out of memory exception errors.

 :(

  Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap
  space at java.util.Arrays.copyOf(Arrays.java:2882) at
 
 java.lang.AbstractStringBuilder.expandCapacity(AbstractStringBuilder.java:100)
 
 
 at
  java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:572)
 
 
 at java.lang.StringBuffer.append(StringBuffer.java:320)
  at org.json.JSONArray.toString(JSONArray.java:834) at
  org.json.JSONObject.valueToString(JSONObject.java:1359) at
  org.json.JSONObject.toString(JSONObject.java:1233) at
  com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503) at
  com.xxx.xxx.servlet.WServlet$1.run(WServlet.java:414) at
  java.util.TimerThread.mainLoop(Timer.java:512) at
  java.util.TimerThread.run(Timer.java:462)

 If you are trying to serialize huge JSON objects, this is going to
 happen. I'm not sure if JSON is as smart as the Java Serialization
 engine, but if you have a circular-reference in your object graph, I'd
 be willing to bet that the JSON serializer will run forever and
 exhaust your heap.

 It's also possible that you simply have a tiny heap and need more,
 especially if you aren't currently setting any heap parameters.

  Is there anyway to see currently set jvm heap size details? Any
  linux commands.

 You can attach any profiler to your app. Good luck catching this in
 the act, though, in production.

 You can also use jmap -heap which comes with the JDK. Just point it
 at a process and you'll get a heap summary from a running JVM. Make
 sure your JVM and jmap version match.

  I have tried creating setenv.sh and putting the new parameters in
  it. but echo $JAVA_OPTS was not giving any value.

 setenv.sh is run during Tomcat startup. Running echo $JAVA_OPTS from
 the command-line isn't going to reveal anything. What you want to do
 is modify setenv.sh, re-launch Tomcat, and then look at the process
 command line... something like this:

 $ ps aux | grep Bootstrap

 This should give you the whole command-line for Tomcat, and you can
 verify that your heap options have been set.

  So I have put in .bash_profile and run it. Then restarted tomcat6.

 Don't do that: it will only work if you login using bash, and it won't
 work for other users you may have to restart Tomcat.

  this is the line I added in .bash_profile. JAVA_OPTS=-Xms256m
  -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log

 You'll need to export JAVA_OPTS, otherwise it won't do anything for you.

 - -chris
 -BEGIN PGP SIGNATURE-
 Version: GnuPG v1
 Comment: GPGTools - http://gpgtools.org
 Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/

 iQIcBAEBCAAGBQJS4TM+AAoJEBzwKT+lPKRYfB4QAMP4/MORiK92nK4kJ+KD9alc
 2QYcriasb8QkPPgvYHGhGaxeLIprb1TE6tZdMSp08bHadDr+HpSbxi5xq9C6A1RJ
 

Re: Out of memory exception

2014-01-23 Thread André Warnier

Randeep wrote:

Hi all,
Thanks a lot for valuable points. Here the information you guys asked and
the changes I made.

OS : CentOS release 5.4 (Final)
httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+ apache-tomcat-6.0.37

I installed httpd using yum.
Downloaded tomcat from Apache as compressed archive(tar.gz)

I'm using following startup script.
[root@server ~]# cat /etc/init.d/tomcat6
#!/bin/bash
# description: Tomcat Start Stop Restart
# processname: tomcat
# chkconfig: 234 20 80
JAVA_HOME=/usr/java/default
export JAVA_HOME
PATH=$JAVA_HOME/bin:$PATH
export PATH
CATALINA_HOME=/usr/share/apache-tomcat-6.0.37
case $1 in
start)
sh $CATALINA_HOME/bin/startup.sh
;;
stop)
sh $CATALINA_HOME/bin/shutdown.sh
;;
restart)
sh $CATALINA_HOME/bin/shutdown.sh
sh $CATALINA_HOME/bin/startup.sh
;;
esac
exit 0

As you said, I removed the JAVA_OPTS declaration from .bash_profile and I
have created setenv.sh and set JAVA_OPTS in it.
[root@server bin]# pwd
/usr/share/apache-tomcat-6.0.37/bin

[root@server bin]# cat setenv.sh
export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log'

Now it shows in grep.
[root@server bin]# ps aux | grep Bootstrap
root  1100 33.7  5.4 707052 95240 pts/0Sl   11:29   0:06
/usr/java/default/bin/java
-Djava.util.logging.config.file=/usr/share/apache-tomcat-6.0.37/conf/logging.properties
-Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Xms256m
-Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log
-Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed -classpath
/usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar
-Dcatalina.base=/usr/share/apache-tomcat-6.0.37
-Dcatalina.home=/usr/share/apache-tomcat-6.0.37
-Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp
org.apache.catalina.startup.Bootstrap start
root  1158  0.0  0.0   3932   692 pts/0R+   11:29   0:00 grep
Bootstrap
[root@server bin]#

But nothing came in heap.log. So I better monitor this and if I get the OOM
again I have to increase Max limit!


Maybe you should provide a full path for the -Xloggc option ?




On Thu, Jan 23, 2014 at 8:50 PM, Christopher Schultz 
ch...@christopherschultz.net wrote:


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Randeep,

On 1/23/14, 7:43 AM, Randeep wrote:

I'm getting out of memory exception errors.

:(


Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap
space at java.util.Arrays.copyOf(Arrays.java:2882) at


java.lang.AbstractStringBuilder.expandCapacity(AbstractStringBuilder.java:100)



at

java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:572)



at java.lang.StringBuffer.append(StringBuffer.java:320)

at org.json.JSONArray.toString(JSONArray.java:834) at
org.json.JSONObject.valueToString(JSONObject.java:1359) at
org.json.JSONObject.toString(JSONObject.java:1233) at
com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503) at
com.xxx.xxx.servlet.WServlet$1.run(WServlet.java:414) at
java.util.TimerThread.mainLoop(Timer.java:512) at
java.util.TimerThread.run(Timer.java:462)

If you are trying to serialize huge JSON objects, this is going to
happen. I'm not sure if JSON is as smart as the Java Serialization
engine, but if you have a circular-reference in your object graph, I'd
be willing to bet that the JSON serializer will run forever and
exhaust your heap.

It's also possible that you simply have a tiny heap and need more,
especially if you aren't currently setting any heap parameters.


Is there anyway to see currently set jvm heap size details? Any
linux commands.

You can attach any profiler to your app. Good luck catching this in
the act, though, in production.

You can also use jmap -heap which comes with the JDK. Just point it
at a process and you'll get a heap summary from a running JVM. Make
sure your JVM and jmap version match.


I have tried creating setenv.sh and putting the new parameters in
it. but echo $JAVA_OPTS was not giving any value.

setenv.sh is run during Tomcat startup. Running echo $JAVA_OPTS from
the command-line isn't going to reveal anything. What you want to do
is modify setenv.sh, re-launch Tomcat, and then look at the process
command line... something like this:

$ ps aux | grep Bootstrap

This should give you the whole command-line for Tomcat, and you can
verify that your heap options have been set.


So I have put in .bash_profile and run it. Then restarted tomcat6.

Don't do that: it will only work if you login using bash, and it won't
work for other users you may have to restart Tomcat.


this is the line I added in .bash_profile. JAVA_OPTS=-Xms256m
-Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log

You'll need to export JAVA_OPTS, otherwise it won't do anything for you.

- -chris
-BEGIN PGP SIGNATURE-
Version: GnuPG v1
Comment: GPGTools - http://gpgtools.org
Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/

iQIcBAEBCAAGBQJS4TM+AAoJEBzwKT+lPKRYfB4QAMP4/MORiK92nK4kJ+KD9alc
2QYcriasb8QkPPgvYHGhGaxeLIprb1TE6tZdMSp08bHadDr+HpSbxi5xq9C6A1RJ

Re: Out of memory exception

2014-01-23 Thread Daniel Mikusa
On Jan 23, 2014, at 11:38 AM, Randeep randeep...@gmail.com wrote:

 Hi all,
 Thanks a lot for valuable points. Here the information you guys asked and
 the changes I made.
 
 OS : CentOS release 5.4 (Final)
 httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+ apache-tomcat-6.0.37
 
 I installed httpd using yum.
 Downloaded tomcat from Apache as compressed archive(tar.gz)
 
 I'm using following startup script.
 [root@server ~]# cat /etc/init.d/tomcat6
 #!/bin/bash
 # description: Tomcat Start Stop Restart
 # processname: tomcat
 # chkconfig: 234 20 80
 JAVA_HOME=/usr/java/default
 export JAVA_HOME
 PATH=$JAVA_HOME/bin:$PATH
 export PATH
 CATALINA_HOME=/usr/share/apache-tomcat-6.0.37
 case $1 in
 start)
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 stop)
 sh $CATALINA_HOME/bin/shutdown.sh
 ;;
 restart)
 sh $CATALINA_HOME/bin/shutdown.sh
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 esac
 exit 0
 
 As you said, I removed the JAVA_OPTS declaration from .bash_profile and I
 have created setenv.sh and set JAVA_OPTS in it.
 [root@server bin]# pwd
 /usr/share/apache-tomcat-6.0.37/bin
 
 [root@server bin]# cat setenv.sh
 export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k

 -verbose:gc -Xloggc:heap.log’

Based on the name of the file you’re listing, it makes me think you’re 
confusing what this option does.  It’s a garbage collection log.  While that 
shows some info about the heap, it’s mainly targeted towards knowing what’s 
happening with GC in your process. 

I can’t help but think you might be looking for 
-XX:+HeapDumpOnOutOfMemoryError, which generates a heap dump when you get an 
OOME.

 
 Now it shows in grep.
 [root@server bin]# ps aux | grep Bootstrap
 root  1100 33.7  5.4 707052 95240 pts/0Sl   11:29   0:06
 /usr/java/default/bin/java
 -Djava.util.logging.config.file=/usr/share/apache-tomcat-6.0.37/conf/logging.properties
 -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log
 -Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed -classpath
 /usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar
 -Dcatalina.base=/usr/share/apache-tomcat-6.0.37
 -Dcatalina.home=/usr/share/apache-tomcat-6.0.37
 -Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp
 org.apache.catalina.startup.Bootstrap start
 root  1158  0.0  0.0   3932   692 pts/0R+   11:29   0:00 grep
 Bootstrap
 [root@server bin]#
 
 But nothing came in heap.log.

Try using this option instead:  -Xloggc:$CATALINA_BASE/logs/heap.log”

That should put the file in your “logs” directory.

Dan

 So I better monitor this and if I get the OOM
 again I have to increase Max limit!
 
 
 On Thu, Jan 23, 2014 at 8:50 PM, Christopher Schultz 
 ch...@christopherschultz.net wrote:
 
 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA256
 
 Randeep,
 
 On 1/23/14, 7:43 AM, Randeep wrote:
 I'm getting out of memory exception errors.
 
 :(
 
 Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap
 space at java.util.Arrays.copyOf(Arrays.java:2882) at
 
 java.lang.AbstractStringBuilder.expandCapacity(AbstractStringBuilder.java:100)
 
 
 at
 java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:572)
 
 
 at java.lang.StringBuffer.append(StringBuffer.java:320)
 at org.json.JSONArray.toString(JSONArray.java:834) at
 org.json.JSONObject.valueToString(JSONObject.java:1359) at
 org.json.JSONObject.toString(JSONObject.java:1233) at
 com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503) at
 com.xxx.xxx.servlet.WServlet$1.run(WServlet.java:414) at
 java.util.TimerThread.mainLoop(Timer.java:512) at
 java.util.TimerThread.run(Timer.java:462)
 
 If you are trying to serialize huge JSON objects, this is going to
 happen. I'm not sure if JSON is as smart as the Java Serialization
 engine, but if you have a circular-reference in your object graph, I'd
 be willing to bet that the JSON serializer will run forever and
 exhaust your heap.
 
 It's also possible that you simply have a tiny heap and need more,
 especially if you aren't currently setting any heap parameters.
 
 Is there anyway to see currently set jvm heap size details? Any
 linux commands.
 
 You can attach any profiler to your app. Good luck catching this in
 the act, though, in production.
 
 You can also use jmap -heap which comes with the JDK. Just point it
 at a process and you'll get a heap summary from a running JVM. Make
 sure your JVM and jmap version match.
 
 I have tried creating setenv.sh and putting the new parameters in
 it. but echo $JAVA_OPTS was not giving any value.
 
 setenv.sh is run during Tomcat startup. Running echo $JAVA_OPTS from
 the command-line isn't going to reveal anything. What you want to do
 is modify setenv.sh, re-launch Tomcat, and then look at the process
 command line... something like this:
 
 $ ps aux | grep Bootstrap
 
 This should give you the whole command-line for Tomcat, and you can
 verify that your heap options have been set.
 
 So I have put in .bash_profile and run it. Then restarted 

Re: Out of memory exception

2014-01-23 Thread Randeep
Thanks. That worked. Anything unusual? Garbage collection is happening too
often?

[root@server logs]# cat /usr/share/apache-tomcat-6.0.37/logs/heap.log
1.910: [GC 16192K-1923K(260160K), 0.0150080 secs]
2.454: [GC 18115K-3151K(260160K), 0.0137140 secs]
2.760: [GC 19343K-3309K(260160K), 0.0058220 secs]
3.648: [GC 19501K-4446K(260160K), 0.0062870 secs]
4.000: [GC 20638K-5063K(260160K), 0.0080940 secs]
4.305: [GC 21255K-6302K(260160K), 0.0060890 secs]
4.598: [GC 22494K-6323K(260160K), 0.0062020 secs]
5.664: [GC 22515K-7098K(260160K), 0.0055070 secs]
6.980: [GC 23290K-8708K(260160K), 0.0176410 secs]
7.332: [GC 24900K-12045K(260160K), 0.0179400 secs]
7.794: [Full GC 24591K-12864K(260160K), 0.2538960 secs]
8.476: [GC 29184K-14200K(260288K), 0.0080560 secs]
8.939: [GC 30520K-15401K(260288K), 0.0407000 secs]
9.379: [GC 31721K-16897K(260288K), 0.0099850 secs]
9.603: [GC 33217K-16652K(260288K), 0.0649140 secs]
10.498: [GC 32972K-17768K(260288K), 0.0068540 secs]
10.885: [GC 34088K-18538K(260288K), 0.0084330 secs]
11.225: [GC 34858K-19584K(260288K), 0.0071730 secs]
11.466: [GC 35904K-20313K(260288K), 0.0050570 secs]
12.128: [GC 36633K-20565K(260288K), 0.0042210 secs]
12.385: [Full GC 26015K-20204K(260288K), 0.2847340 secs]
13.817: [GC 36524K-22174K(260288K), 0.0155690 secs]
14.127: [GC 38494K-25303K(260288K), 0.0816490 secs]
14.671: [GC 41623K-27150K(260288K), 0.0436660 secs]
15.173: [GC 43470K-28757K(260288K), 0.0140720 secs]
15.414: [Full GC 32030K-28926K(260288K), 0.3071990 secs]
65.004: [GC 45310K-31775K(260352K), 0.0105440 secs]
[root@server logs]#


On Thu, Jan 23, 2014 at 10:33 PM, André Warnier a...@ice-sa.com wrote:

 Randeep wrote:

 Hi all,
 Thanks a lot for valuable points. Here the information you guys asked and
 the changes I made.

 OS : CentOS release 5.4 (Final)
 httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+ apache-tomcat-6.0.37

 I installed httpd using yum.
 Downloaded tomcat from Apache as compressed archive(tar.gz)

 I'm using following startup script.
 [root@server ~]# cat /etc/init.d/tomcat6
 #!/bin/bash
 # description: Tomcat Start Stop Restart
 # processname: tomcat
 # chkconfig: 234 20 80
 JAVA_HOME=/usr/java/default
 export JAVA_HOME
 PATH=$JAVA_HOME/bin:$PATH
 export PATH
 CATALINA_HOME=/usr/share/apache-tomcat-6.0.37
 case $1 in
 start)
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 stop)
 sh $CATALINA_HOME/bin/shutdown.sh
 ;;
 restart)
 sh $CATALINA_HOME/bin/shutdown.sh
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 esac
 exit 0

 As you said, I removed the JAVA_OPTS declaration from .bash_profile and I
 have created setenv.sh and set JAVA_OPTS in it.
 [root@server bin]# pwd
 /usr/share/apache-tomcat-6.0.37/bin

 [root@server bin]# cat setenv.sh
 export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log'

 Now it shows in grep.
 [root@server bin]# ps aux | grep Bootstrap
 root  1100 33.7  5.4 707052 95240 pts/0Sl   11:29   0:06
 /usr/java/default/bin/java
 -Djava.util.logging.config.file=/usr/share/apache-tomcat-
 6.0.37/conf/logging.properties
 -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
 -Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log
 -Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed -classpath
 /usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar
 -Dcatalina.base=/usr/share/apache-tomcat-6.0.37
 -Dcatalina.home=/usr/share/apache-tomcat-6.0.37
 -Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp
 org.apache.catalina.startup.Bootstrap start
 root  1158  0.0  0.0   3932   692 pts/0R+   11:29   0:00 grep
 Bootstrap
 [root@server bin]#

 But nothing came in heap.log. So I better monitor this and if I get the
 OOM
 again I have to increase Max limit!


 Maybe you should provide a full path for the -Xloggc option ?




 On Thu, Jan 23, 2014 at 8:50 PM, Christopher Schultz 
 ch...@christopherschultz.net wrote:

  -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA256

 Randeep,

 On 1/23/14, 7:43 AM, Randeep wrote:

 I'm getting out of memory exception errors.

 :(

  Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap
 space at java.util.Arrays.copyOf(Arrays.java:2882) at

  java.lang.AbstractStringBuilder.expandCapacity(
 AbstractStringBuilder.java:100)


  at

 java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:572)


  at java.lang.StringBuffer.append(StringBuffer.java:320)

 at org.json.JSONArray.toString(JSONArray.java:834) at
 org.json.JSONObject.valueToString(JSONObject.java:1359) at
 org.json.JSONObject.toString(JSONObject.java:1233) at
 com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503) at
 com.xxx.xxx.servlet.WServlet$1.run(WServlet.java:414) at
 java.util.TimerThread.mainLoop(Timer.java:512) at
 java.util.TimerThread.run(Timer.java:462)

 If you are trying to serialize huge JSON objects, this is going to
 happen. I'm not sure if JSON is as smart as the Java Serialization
 engine, but if you have a circular-reference in your object graph, I'd
 be willing to bet that the JSON serializer 

Re: Out of memory exception

2014-01-23 Thread Randeep
I mean i'd to give full path.

like this
export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k -verbose:gc
-Xloggc:/usr/share/apache-tomcat-6.0.37/logs/heap.log'



On Thu, Jan 23, 2014 at 10:47 PM, Randeep randeep...@gmail.com wrote:

 Thanks. That worked. Anything unusual? Garbage collection is happening too
 often?

 [root@server logs]# cat /usr/share/apache-tomcat-6.0.37/logs/heap.log
 1.910: [GC 16192K-1923K(260160K), 0.0150080 secs]
 2.454: [GC 18115K-3151K(260160K), 0.0137140 secs]
 2.760: [GC 19343K-3309K(260160K), 0.0058220 secs]
 3.648: [GC 19501K-4446K(260160K), 0.0062870 secs]
 4.000: [GC 20638K-5063K(260160K), 0.0080940 secs]
 4.305: [GC 21255K-6302K(260160K), 0.0060890 secs]
 4.598: [GC 22494K-6323K(260160K), 0.0062020 secs]
 5.664: [GC 22515K-7098K(260160K), 0.0055070 secs]
 6.980: [GC 23290K-8708K(260160K), 0.0176410 secs]
 7.332: [GC 24900K-12045K(260160K), 0.0179400 secs]
 7.794: [Full GC 24591K-12864K(260160K), 0.2538960 secs]
 8.476: [GC 29184K-14200K(260288K), 0.0080560 secs]
 8.939: [GC 30520K-15401K(260288K), 0.0407000 secs]
 9.379: [GC 31721K-16897K(260288K), 0.0099850 secs]
 9.603: [GC 33217K-16652K(260288K), 0.0649140 secs]
 10.498: [GC 32972K-17768K(260288K), 0.0068540 secs]
 10.885: [GC 34088K-18538K(260288K), 0.0084330 secs]
 11.225: [GC 34858K-19584K(260288K), 0.0071730 secs]
 11.466: [GC 35904K-20313K(260288K), 0.0050570 secs]
 12.128: [GC 36633K-20565K(260288K), 0.0042210 secs]
 12.385: [Full GC 26015K-20204K(260288K), 0.2847340 secs]
 13.817: [GC 36524K-22174K(260288K), 0.0155690 secs]
 14.127: [GC 38494K-25303K(260288K), 0.0816490 secs]
 14.671: [GC 41623K-27150K(260288K), 0.0436660 secs]
 15.173: [GC 43470K-28757K(260288K), 0.0140720 secs]
 15.414: [Full GC 32030K-28926K(260288K), 0.3071990 secs]
 65.004: [GC 45310K-31775K(260352K), 0.0105440 secs]
 [root@server logs]#


 On Thu, Jan 23, 2014 at 10:33 PM, André Warnier a...@ice-sa.com wrote:

 Randeep wrote:

 Hi all,
 Thanks a lot for valuable points. Here the information you guys asked and
 the changes I made.

 OS : CentOS release 5.4 (Final)
 httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+ apache-tomcat-6.0.37

 I installed httpd using yum.
 Downloaded tomcat from Apache as compressed archive(tar.gz)

 I'm using following startup script.
 [root@server ~]# cat /etc/init.d/tomcat6
 #!/bin/bash
 # description: Tomcat Start Stop Restart
 # processname: tomcat
 # chkconfig: 234 20 80
 JAVA_HOME=/usr/java/default
 export JAVA_HOME
 PATH=$JAVA_HOME/bin:$PATH
 export PATH
 CATALINA_HOME=/usr/share/apache-tomcat-6.0.37
 case $1 in
 start)
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 stop)
 sh $CATALINA_HOME/bin/shutdown.sh
 ;;
 restart)
 sh $CATALINA_HOME/bin/shutdown.sh
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 esac
 exit 0

 As you said, I removed the JAVA_OPTS declaration from .bash_profile and I
 have created setenv.sh and set JAVA_OPTS in it.
 [root@server bin]# pwd
 /usr/share/apache-tomcat-6.0.37/bin

 [root@server bin]# cat setenv.sh
 export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k -verbose:gc
 -Xloggc:heap.log'

 Now it shows in grep.
 [root@server bin]# ps aux | grep Bootstrap
 root  1100 33.7  5.4 707052 95240 pts/0Sl   11:29   0:06
 /usr/java/default/bin/java
 -Djava.util.logging.config.file=/usr/share/apache-tomcat-
 6.0.37/conf/logging.properties
 -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
 -Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log
 -Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed -classpath
 /usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar
 -Dcatalina.base=/usr/share/apache-tomcat-6.0.37
 -Dcatalina.home=/usr/share/apache-tomcat-6.0.37
 -Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp
 org.apache.catalina.startup.Bootstrap start
 root  1158  0.0  0.0   3932   692 pts/0R+   11:29   0:00 grep
 Bootstrap
 [root@server bin]#

 But nothing came in heap.log. So I better monitor this and if I get the
 OOM
 again I have to increase Max limit!


 Maybe you should provide a full path for the -Xloggc option ?




 On Thu, Jan 23, 2014 at 8:50 PM, Christopher Schultz 
 ch...@christopherschultz.net wrote:

  -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA256

 Randeep,

 On 1/23/14, 7:43 AM, Randeep wrote:

 I'm getting out of memory exception errors.

 :(

  Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap
 space at java.util.Arrays.copyOf(Arrays.java:2882) at

  java.lang.AbstractStringBuilder.expandCapacity(
 AbstractStringBuilder.java:100)


  at

 java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:572)


  at java.lang.StringBuffer.append(StringBuffer.java:320)

 at org.json.JSONArray.toString(JSONArray.java:834) at
 org.json.JSONObject.valueToString(JSONObject.java:1359) at
 org.json.JSONObject.toString(JSONObject.java:1233) at
 com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503) at
 com.xxx.xxx.servlet.WServlet$1.run(WServlet.java:414) at
 java.util.TimerThread.mainLoop(Timer.java:512) at
 

Re: Out of memory exception

2014-01-23 Thread Randeep
I have added -XX:+HeapDumpOnOutOfMemoryError also.
Thanks.


On Thu, Jan 23, 2014 at 10:49 PM, Randeep randeep...@gmail.com wrote:

 I mean i'd to give full path.

 like this
 export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k -verbose:gc
 -Xloggc:/usr/share/apache-tomcat-6.0.37/logs/heap.log'



 On Thu, Jan 23, 2014 at 10:47 PM, Randeep randeep...@gmail.com wrote:

 Thanks. That worked. Anything unusual? Garbage collection is happening
 too often?

 [root@server logs]# cat /usr/share/apache-tomcat-6.0.37/logs/heap.log
 1.910: [GC 16192K-1923K(260160K), 0.0150080 secs]
 2.454: [GC 18115K-3151K(260160K), 0.0137140 secs]
 2.760: [GC 19343K-3309K(260160K), 0.0058220 secs]
 3.648: [GC 19501K-4446K(260160K), 0.0062870 secs]
 4.000: [GC 20638K-5063K(260160K), 0.0080940 secs]
 4.305: [GC 21255K-6302K(260160K), 0.0060890 secs]
 4.598: [GC 22494K-6323K(260160K), 0.0062020 secs]
 5.664: [GC 22515K-7098K(260160K), 0.0055070 secs]
 6.980: [GC 23290K-8708K(260160K), 0.0176410 secs]
 7.332: [GC 24900K-12045K(260160K), 0.0179400 secs]
 7.794: [Full GC 24591K-12864K(260160K), 0.2538960 secs]
 8.476: [GC 29184K-14200K(260288K), 0.0080560 secs]
 8.939: [GC 30520K-15401K(260288K), 0.0407000 secs]
 9.379: [GC 31721K-16897K(260288K), 0.0099850 secs]
 9.603: [GC 33217K-16652K(260288K), 0.0649140 secs]
 10.498: [GC 32972K-17768K(260288K), 0.0068540 secs]
 10.885: [GC 34088K-18538K(260288K), 0.0084330 secs]
 11.225: [GC 34858K-19584K(260288K), 0.0071730 secs]
 11.466: [GC 35904K-20313K(260288K), 0.0050570 secs]
 12.128: [GC 36633K-20565K(260288K), 0.0042210 secs]
 12.385: [Full GC 26015K-20204K(260288K), 0.2847340 secs]
 13.817: [GC 36524K-22174K(260288K), 0.0155690 secs]
 14.127: [GC 38494K-25303K(260288K), 0.0816490 secs]
 14.671: [GC 41623K-27150K(260288K), 0.0436660 secs]
 15.173: [GC 43470K-28757K(260288K), 0.0140720 secs]
 15.414: [Full GC 32030K-28926K(260288K), 0.3071990 secs]
 65.004: [GC 45310K-31775K(260352K), 0.0105440 secs]
 [root@server logs]#


 On Thu, Jan 23, 2014 at 10:33 PM, André Warnier a...@ice-sa.com wrote:

 Randeep wrote:

 Hi all,
 Thanks a lot for valuable points. Here the information you guys asked
 and
 the changes I made.

 OS : CentOS release 5.4 (Final)
 httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+ apache-tomcat-6.0.37

 I installed httpd using yum.
 Downloaded tomcat from Apache as compressed archive(tar.gz)

 I'm using following startup script.
 [root@server ~]# cat /etc/init.d/tomcat6
 #!/bin/bash
 # description: Tomcat Start Stop Restart
 # processname: tomcat
 # chkconfig: 234 20 80
 JAVA_HOME=/usr/java/default
 export JAVA_HOME
 PATH=$JAVA_HOME/bin:$PATH
 export PATH
 CATALINA_HOME=/usr/share/apache-tomcat-6.0.37
 case $1 in
 start)
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 stop)
 sh $CATALINA_HOME/bin/shutdown.sh
 ;;
 restart)
 sh $CATALINA_HOME/bin/shutdown.sh
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 esac
 exit 0

 As you said, I removed the JAVA_OPTS declaration from .bash_profile and
 I
 have created setenv.sh and set JAVA_OPTS in it.
 [root@server bin]# pwd
 /usr/share/apache-tomcat-6.0.37/bin

 [root@server bin]# cat setenv.sh
 export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k -verbose:gc
 -Xloggc:heap.log'

 Now it shows in grep.
 [root@server bin]# ps aux | grep Bootstrap
 root  1100 33.7  5.4 707052 95240 pts/0Sl   11:29   0:06
 /usr/java/default/bin/java
 -Djava.util.logging.config.file=/usr/share/apache-tomcat-
 6.0.37/conf/logging.properties
 -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
 -Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log
 -Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed
 -classpath
 /usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar
 -Dcatalina.base=/usr/share/apache-tomcat-6.0.37
 -Dcatalina.home=/usr/share/apache-tomcat-6.0.37
 -Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp
 org.apache.catalina.startup.Bootstrap start
 root  1158  0.0  0.0   3932   692 pts/0R+   11:29   0:00 grep
 Bootstrap
 [root@server bin]#

 But nothing came in heap.log. So I better monitor this and if I get the
 OOM
 again I have to increase Max limit!


 Maybe you should provide a full path for the -Xloggc option ?




 On Thu, Jan 23, 2014 at 8:50 PM, Christopher Schultz 
 ch...@christopherschultz.net wrote:

  -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA256

 Randeep,

 On 1/23/14, 7:43 AM, Randeep wrote:

 I'm getting out of memory exception errors.

 :(

  Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap
 space at java.util.Arrays.copyOf(Arrays.java:2882) at

  java.lang.AbstractStringBuilder.expandCapacity(
 AbstractStringBuilder.java:100)


  at

 java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:
 572)


  at java.lang.StringBuffer.append(StringBuffer.java:320)

 at org.json.JSONArray.toString(JSONArray.java:834) at
 org.json.JSONObject.valueToString(JSONObject.java:1359) at
 org.json.JSONObject.toString(JSONObject.java:1233) at
 com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503) at
 

Re: Out of memory exception

2014-01-23 Thread Daniel Mikusa
On Jan 23, 2014, at 12:22 PM, Randeep randeep...@gmail.com wrote:

 I have added -XX:+HeapDumpOnOutOfMemoryError also.
 Thanks.

Please stop top posting.

Post your comments inline or at the bottom, like everyone else.  It makes 
following the conversation much easier.

Dan

 
 
 On Thu, Jan 23, 2014 at 10:49 PM, Randeep randeep...@gmail.com wrote:
 
 I mean i'd to give full path.
 
 like this
 export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k -verbose:gc
 -Xloggc:/usr/share/apache-tomcat-6.0.37/logs/heap.log'
 
 
 
 On Thu, Jan 23, 2014 at 10:47 PM, Randeep randeep...@gmail.com wrote:
 
 Thanks. That worked. Anything unusual? Garbage collection is happening
 too often?
 
 [root@server logs]# cat /usr/share/apache-tomcat-6.0.37/logs/heap.log
 1.910: [GC 16192K-1923K(260160K), 0.0150080 secs]
 2.454: [GC 18115K-3151K(260160K), 0.0137140 secs]
 2.760: [GC 19343K-3309K(260160K), 0.0058220 secs]
 3.648: [GC 19501K-4446K(260160K), 0.0062870 secs]
 4.000: [GC 20638K-5063K(260160K), 0.0080940 secs]
 4.305: [GC 21255K-6302K(260160K), 0.0060890 secs]
 4.598: [GC 22494K-6323K(260160K), 0.0062020 secs]
 5.664: [GC 22515K-7098K(260160K), 0.0055070 secs]
 6.980: [GC 23290K-8708K(260160K), 0.0176410 secs]
 7.332: [GC 24900K-12045K(260160K), 0.0179400 secs]
 7.794: [Full GC 24591K-12864K(260160K), 0.2538960 secs]
 8.476: [GC 29184K-14200K(260288K), 0.0080560 secs]
 8.939: [GC 30520K-15401K(260288K), 0.0407000 secs]
 9.379: [GC 31721K-16897K(260288K), 0.0099850 secs]
 9.603: [GC 33217K-16652K(260288K), 0.0649140 secs]
 10.498: [GC 32972K-17768K(260288K), 0.0068540 secs]
 10.885: [GC 34088K-18538K(260288K), 0.0084330 secs]
 11.225: [GC 34858K-19584K(260288K), 0.0071730 secs]
 11.466: [GC 35904K-20313K(260288K), 0.0050570 secs]
 12.128: [GC 36633K-20565K(260288K), 0.0042210 secs]
 12.385: [Full GC 26015K-20204K(260288K), 0.2847340 secs]
 13.817: [GC 36524K-22174K(260288K), 0.0155690 secs]
 14.127: [GC 38494K-25303K(260288K), 0.0816490 secs]
 14.671: [GC 41623K-27150K(260288K), 0.0436660 secs]
 15.173: [GC 43470K-28757K(260288K), 0.0140720 secs]
 15.414: [Full GC 32030K-28926K(260288K), 0.3071990 secs]
 65.004: [GC 45310K-31775K(260352K), 0.0105440 secs]
 [root@server logs]#
 
 
 On Thu, Jan 23, 2014 at 10:33 PM, André Warnier a...@ice-sa.com wrote:
 
 Randeep wrote:
 
 Hi all,
 Thanks a lot for valuable points. Here the information you guys asked
 and
 the changes I made.
 
 OS : CentOS release 5.4 (Final)
 httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+ apache-tomcat-6.0.37
 
 I installed httpd using yum.
 Downloaded tomcat from Apache as compressed archive(tar.gz)
 
 I'm using following startup script.
 [root@server ~]# cat /etc/init.d/tomcat6
 #!/bin/bash
 # description: Tomcat Start Stop Restart
 # processname: tomcat
 # chkconfig: 234 20 80
 JAVA_HOME=/usr/java/default
 export JAVA_HOME
 PATH=$JAVA_HOME/bin:$PATH
 export PATH
 CATALINA_HOME=/usr/share/apache-tomcat-6.0.37
 case $1 in
 start)
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 stop)
 sh $CATALINA_HOME/bin/shutdown.sh
 ;;
 restart)
 sh $CATALINA_HOME/bin/shutdown.sh
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 esac
 exit 0
 
 As you said, I removed the JAVA_OPTS declaration from .bash_profile and
 I
 have created setenv.sh and set JAVA_OPTS in it.
 [root@server bin]# pwd
 /usr/share/apache-tomcat-6.0.37/bin
 
 [root@server bin]# cat setenv.sh
 export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k -verbose:gc
 -Xloggc:heap.log'
 
 Now it shows in grep.
 [root@server bin]# ps aux | grep Bootstrap
 root  1100 33.7  5.4 707052 95240 pts/0Sl   11:29   0:06
 /usr/java/default/bin/java
 -Djava.util.logging.config.file=/usr/share/apache-tomcat-
 6.0.37/conf/logging.properties
 -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
 -Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log
 -Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed
 -classpath
 /usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar
 -Dcatalina.base=/usr/share/apache-tomcat-6.0.37
 -Dcatalina.home=/usr/share/apache-tomcat-6.0.37
 -Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp
 org.apache.catalina.startup.Bootstrap start
 root  1158  0.0  0.0   3932   692 pts/0R+   11:29   0:00 grep
 Bootstrap
 [root@server bin]#
 
 But nothing came in heap.log. So I better monitor this and if I get the
 OOM
 again I have to increase Max limit!
 
 
 Maybe you should provide a full path for the -Xloggc option ?
 
 
 
 
 On Thu, Jan 23, 2014 at 8:50 PM, Christopher Schultz 
 ch...@christopherschultz.net wrote:
 
 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA256
 
 Randeep,
 
 On 1/23/14, 7:43 AM, Randeep wrote:
 
 I'm getting out of memory exception errors.
 
 :(
 
 Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap
 space at java.util.Arrays.copyOf(Arrays.java:2882) at
 
 java.lang.AbstractStringBuilder.expandCapacity(
 AbstractStringBuilder.java:100)
 
 
 at
 
 java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:
 572)
 
 
 at 

Re: Out of memory exception

2014-01-23 Thread Christopher Schultz
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Randeep,

On 1/23/14, 11:38 AM, Randeep wrote:
 Hi all, Thanks a lot for valuable points. Here the information you
 guys asked and the changes I made.
 
 OS : CentOS release 5.4 (Final) 
 httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+
 apache-tomcat-6.0.37
 
 I installed httpd using yum. Downloaded tomcat from Apache as
 compressed archive(tar.gz)
 
 I'm using following startup script. [root@server ~]# cat
 /etc/init.d/tomcat6 #!/bin/bash # description: Tomcat Start Stop
 Restart # processname: tomcat # chkconfig: 234 20 80 
 JAVA_HOME=/usr/java/default export JAVA_HOME 
 PATH=$JAVA_HOME/bin:$PATH export PATH 
 CATALINA_HOME=/usr/share/apache-tomcat-6.0.37 case $1 in start) sh
 $CATALINA_HOME/bin/startup.sh ;; stop) sh
 $CATALINA_HOME/bin/shutdown.sh ;; restart) sh
 $CATALINA_HOME/bin/shutdown.sh sh $CATALINA_HOME/bin/startup.sh ;; 
 esac exit 0
 
 As you said, I removed the JAVA_OPTS declaration from .bash_profile
 and I have created setenv.sh and set JAVA_OPTS in it. [root@server
 bin]# pwd /usr/share/apache-tomcat-6.0.37/bin
 
 [root@server bin]# cat setenv.sh export JAVA_OPTS='-Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log'
 
 Now it shows in grep. [root@server bin]# ps aux | grep Bootstrap 
 root  1100 33.7  5.4 707052 95240 pts/0Sl   11:29   0:06 
 /usr/java/default/bin/java 
 -Djava.util.logging.config.file=/usr/share/apache-tomcat-6.0.37/conf/logging.properties

 
- -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log 
 -Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed
 -classpath /usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar 
 -Dcatalina.base=/usr/share/apache-tomcat-6.0.37 
 -Dcatalina.home=/usr/share/apache-tomcat-6.0.37 
 -Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp 
 org.apache.catalina.startup.Bootstrap start root  1158  0.0
 0.0   3932   692 pts/0R+   11:29   0:00 grep Bootstrap 
 [root@server bin]#
 
 But nothing came in heap.log.

You should use a full path in Xloggc:heap so you always know where the
file is. As it stands, it will be in the CWD of the JVM process. Not
sure where that is, because you can run startup.sh from anywhere.

- -chris
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Version: GnuPG v1
Comment: GPGTools - http://gpgtools.org
Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/

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Re: Out of memory exception

2014-01-23 Thread Christopher Schultz
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Randeep,

On 1/23/14, 12:17 PM, Randeep wrote:
 Thanks. That worked. Anything unusual? Garbage collection is
 happening too often?
 
 [root@server logs]# cat
 /usr/share/apache-tomcat-6.0.37/logs/heap.log 1.910: [GC
 16192K-1923K(260160K), 0.0150080 secs] 2.454: [GC
 18115K-3151K(260160K), 0.0137140 secs] 2.760: [GC
 19343K-3309K(260160K), 0.0058220 secs] 3.648: [GC
 19501K-4446K(260160K), 0.0062870 secs] 4.000: [GC
 20638K-5063K(260160K), 0.0080940 secs] 4.305: [GC
 21255K-6302K(260160K), 0.0060890 secs] 4.598: [GC
 22494K-6323K(260160K), 0.0062020 secs] 5.664: [GC
 22515K-7098K(260160K), 0.0055070 secs] 6.980: [GC
 23290K-8708K(260160K), 0.0176410 secs] 7.332: [GC
 24900K-12045K(260160K), 0.0179400 secs] 7.794: [Full GC
 24591K-12864K(260160K), 0.2538960 secs] 8.476: [GC
 29184K-14200K(260288K), 0.0080560 secs] 8.939: [GC
 30520K-15401K(260288K), 0.0407000 secs] 9.379: [GC
 31721K-16897K(260288K), 0.0099850 secs] 9.603: [GC
 33217K-16652K(260288K), 0.0649140 secs] 10.498: [GC
 32972K-17768K(260288K), 0.0068540 secs] 10.885: [GC
 34088K-18538K(260288K), 0.0084330 secs] 11.225: [GC
 34858K-19584K(260288K), 0.0071730 secs] 11.466: [GC
 35904K-20313K(260288K), 0.0050570 secs] 12.128: [GC
 36633K-20565K(260288K), 0.0042210 secs] 12.385: [Full GC
 26015K-20204K(260288K), 0.2847340 secs] 13.817: [GC
 36524K-22174K(260288K), 0.0155690 secs] 14.127: [GC
 38494K-25303K(260288K), 0.0816490 secs] 14.671: [GC
 41623K-27150K(260288K), 0.0436660 secs] 15.173: [GC
 43470K-28757K(260288K), 0.0140720 secs] 15.414: [Full GC
 32030K-28926K(260288K), 0.3071990 secs] 65.004: [GC
 45310K-31775K(260352K), 0.0105440 secs] [root@server logs]#

Do what I do: write a Perl script to pull-apart the data from above
into something useful, like CSV, and then use a spreadsheet to graph
the data. Graphing heap data *really* helps. Looking at numbers is ...
useless.

- -chris

 On Thu, Jan 23, 2014 at 10:33 PM, André Warnier a...@ice-sa.com
 wrote:
 
 Randeep wrote:
 
 Hi all, Thanks a lot for valuable points. Here the information
 you guys asked and the changes I made.
 
 OS : CentOS release 5.4 (Final) 
 httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+
 apache-tomcat-6.0.37
 
 I installed httpd using yum. Downloaded tomcat from Apache as
 compressed archive(tar.gz)
 
 I'm using following startup script. [root@server ~]# cat
 /etc/init.d/tomcat6 #!/bin/bash # description: Tomcat Start
 Stop Restart # processname: tomcat # chkconfig: 234 20 80 
 JAVA_HOME=/usr/java/default export JAVA_HOME 
 PATH=$JAVA_HOME/bin:$PATH export PATH 
 CATALINA_HOME=/usr/share/apache-tomcat-6.0.37 case $1 in 
 start) sh $CATALINA_HOME/bin/startup.sh ;; stop) sh
 $CATALINA_HOME/bin/shutdown.sh ;; restart) sh
 $CATALINA_HOME/bin/shutdown.sh sh
 $CATALINA_HOME/bin/startup.sh ;; esac exit 0
 
 As you said, I removed the JAVA_OPTS declaration from
 .bash_profile and I have created setenv.sh and set JAVA_OPTS in
 it. [root@server bin]# pwd /usr/share/apache-tomcat-6.0.37/bin
 
 [root@server bin]# cat setenv.sh export JAVA_OPTS='-Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log'
 
 Now it shows in grep. [root@server bin]# ps aux | grep
 Bootstrap root  1100 33.7  5.4 707052 95240 pts/0Sl
 11:29   0:06 /usr/java/default/bin/java 
 -Djava.util.logging.config.file=/usr/share/apache-tomcat- 
 6.0.37/conf/logging.properties 
 -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager

 
- -Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log 
 -Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed
 -classpath /usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar 
 -Dcatalina.base=/usr/share/apache-tomcat-6.0.37 
 -Dcatalina.home=/usr/share/apache-tomcat-6.0.37 
 -Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp 
 org.apache.catalina.startup.Bootstrap start root  1158  0.0
 0.0   3932   692 pts/0R+   11:29   0:00 grep Bootstrap 
 [root@server bin]#
 
 But nothing came in heap.log. So I better monitor this and if I
 get the OOM again I have to increase Max limit!
 
 
 Maybe you should provide a full path for the -Xloggc option ?
 
 
 
 
 On Thu, Jan 23, 2014 at 8:50 PM, Christopher Schultz  
 ch...@christopherschultz.net wrote:
 
 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA256
 
 Randeep,
 
 On 1/23/14, 7:43 AM, Randeep wrote:
 
 I'm getting out of memory exception errors.
 
 :(
 
 Exception in thread Timer-1 java.lang.OutOfMemoryError:
 Java heap
 space at java.util.Arrays.copyOf(Arrays.java:2882) at
 
 java.lang.AbstractStringBuilder.expandCapacity(
 AbstractStringBuilder.java:100)
 
 
 at
 
 java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:572)



 
at java.lang.StringBuffer.append(StringBuffer.java:320)
 
 at org.json.JSONArray.toString(JSONArray.java:834) at 
 org.json.JSONObject.valueToString(JSONObject.java:1359) at 
 org.json.JSONObject.toString(JSONObject.java:1233) at 
 com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503)
 at 

Re: Out of memory exception

2014-01-23 Thread Ray Holme
Doing anything as root conceals the errors. Tomcat is no exception and changing 
it to a real user makes your testing complete.





On Thursday, January 23, 2014 12:36 PM, Daniel Mikusa dmik...@gopivotal.com 
wrote:
 
On Jan 23, 2014, at 11:38 AM, Randeep randeep...@gmail.com wrote:

 Hi all,
 Thanks a lot for valuable points. Here the information you guys asked and
 the changes I made.
 
 OS : CentOS release 5.4 (Final)
 httpd-2.2.3-65.el5.centos(front_end) +(mod_jk)+ apache-tomcat-6.0.37
 
 I installed httpd using yum.
 Downloaded tomcat from Apache as compressed archive(tar.gz)
 
 I'm using following startup script.
 [root@server ~]# cat /etc/init.d/tomcat6
 #!/bin/bash
 # description: Tomcat Start Stop Restart
 # processname: tomcat
 # chkconfig: 234 20 80
 JAVA_HOME=/usr/java/default
 export JAVA_HOME
 PATH=$JAVA_HOME/bin:$PATH
 export PATH
 CATALINA_HOME=/usr/share/apache-tomcat-6.0.37
 case $1 in
 start)
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 stop)
 sh $CATALINA_HOME/bin/shutdown.sh
 ;;
 restart)
 sh $CATALINA_HOME/bin/shutdown.sh
 sh $CATALINA_HOME/bin/startup.sh
 ;;
 esac
 exit 0
 
 As you said, I removed the JAVA_OPTS declaration from .bash_profile and I
 have created setenv.sh and set JAVA_OPTS in it.
 [root@server bin]# pwd
 /usr/share/apache-tomcat-6.0.37/bin
 
 [root@server bin]# cat setenv.sh
 export JAVA_OPTS='-Xms256m -Xmx512m -Xss512k

 -verbose:gc -Xloggc:heap.log’

Based on the name of the file you’re listing, it makes me think you’re 
confusing what this option does.  It’s a garbage collection log.  While that 
shows some info about the heap, it’s mainly targeted towards knowing what’s 
happening with GC in your process. 

I can’t help but think you might be looking for 
-XX:+HeapDumpOnOutOfMemoryError, which generates a heap dump when you get an 
OOME.

 
 Now it shows in grep.
 [root@server bin]# ps aux | grep Bootstrap
 root      1100 33.7  5.4 707052 95240 pts/0    Sl   11:29   0:06
 /usr/java/default/bin/java
 -Djava.util.logging.config.file=/usr/share/apache-tomcat-6.0.37/conf/logging.properties
 -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Xms256m
 -Xmx512m -Xss512k -verbose:gc -Xloggc:heap.log
 -Djava.endorsed.dirs=/usr/share/apache-tomcat-6.0.37/endorsed -classpath
 /usr/share/apache-tomcat-6.0.37/bin/bootstrap.jar
 -Dcatalina.base=/usr/share/apache-tomcat-6.0.37
 -Dcatalina.home=/usr/share/apache-tomcat-6.0.37
 -Djava.io.tmpdir=/usr/share/apache-tomcat-6.0.37/temp
 org.apache.catalina.startup.Bootstrap start
 root      1158  0.0  0.0   3932   692 pts/0    R+   11:29   0:00 grep
 Bootstrap
 [root@server bin]#
 
 But nothing came in heap.log.

Try using this option instead:  -Xloggc:$CATALINA_BASE/logs/heap.log”

That should put the file in your “logs” directory.

Dan

 So I better monitor this and if I get the OOM
 again I have to increase Max limit!
 
 
 On Thu, Jan 23, 2014 at 8:50 PM, Christopher Schultz 
 ch...@christopherschultz.net wrote:
 
 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA256
 
 Randeep,
 
 On 1/23/14, 7:43 AM, Randeep wrote:
 I'm getting out of memory exception errors.
 
 :(
 
 Exception in thread Timer-1 java.lang.OutOfMemoryError: Java heap
 space at java.util.Arrays.copyOf(Arrays.java:2882) at
 
 java.lang.AbstractStringBuilder.expandCapacity(AbstractStringBuilder.java:100)
 
 
 at
 java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:572)
 
 
 at java.lang.StringBuffer.append(StringBuffer.java:320)
 at org.json.JSONArray.toString(JSONArray.java:834) at
 org.json.JSONObject.valueToString(JSONObject.java:1359) at
 org.json.JSONObject.toString(JSONObject.java:1233) at
 com.xxx.xxx.servlet.WServlet.writeProgramJson(WServlet.java:503) at
 com.xxx.xxx.servlet.WServlet$1.run(WServlet.java:414) at
 java.util.TimerThread.mainLoop(Timer.java:512) at
 java.util.TimerThread.run(Timer.java:462)
 
 If you are trying to serialize huge JSON objects, this is going to
 happen. I'm not sure if JSON is as smart as the Java Serialization
 engine, but if you have a circular-reference in your object graph, I'd
 be willing to bet that the JSON serializer will run forever and
 exhaust your heap.
 
 It's also possible that you simply have a tiny heap and need more,
 especially if you aren't currently setting any heap parameters.
 
 Is there anyway to see currently set jvm heap size details? Any
 linux commands.
 
 You can attach any profiler to your app. Good luck catching this in
 the act, though, in production.
 
 You can also use jmap -heap which comes with the JDK. Just point it
 at a process and you'll get a heap summary from a running JVM. Make
 sure your JVM and jmap version match.
 
 I have tried creating setenv.sh and putting the new parameters in
 it. but echo $JAVA_OPTS was not giving any value.
 
 setenv.sh is run during Tomcat startup. Running echo $JAVA_OPTS from
 the command-line isn't going to reveal anything. What you want to do
 is modify setenv.sh, re-launch Tomcat, and then look at the process
 command line... something 

Re: Out of Memory exception (hotspot compilation)

2010-06-03 Thread Leon Rosenberg
On Thu, Jun 3, 2010 at 1:54 AM, Leon Kolchinsky lkolc...@gmail.com wrote:
 Yep :)
 You're right Charles.

 Thanks,
 Leon

From Leon To Leon,
an advice from personal experience and the golden rule of the tomcat
user list, write it down in glowing red letters on the wall you are
looking at most:
Charles is ALWAYS right. ;-)

regards
Leon

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Re: Out of Memory exception (hotspot compilation)

2010-06-03 Thread Leon Kolchinsky
Hello,

Just wanted to update on this issue.
Atlassian support confirms that this is a known issue with Java 6.0_18 and
up.
So, the best solution for now is to use 6.0_17
Here - 
http://jira.atlassian.com/browse/CONF-19049http://jira.atlassian.com/browse/CONF-19049?focusedCommentId=197013#action_197013

Regards,
Leon Kolchinsky


On Thu, Jun 3, 2010 at 16:14, Leon Rosenberg rosenberg.l...@gmail.comwrote:

 On Thu, Jun 3, 2010 at 1:54 AM, Leon Kolchinsky lkolc...@gmail.com
 wrote:
  Yep :)
  You're right Charles.
 
  Thanks,
  Leon

 From Leon To Leon,
 an advice from personal experience and the golden rule of the tomcat
 user list, write it down in glowing red letters on the wall you are
 looking at most:
 Charles is ALWAYS right. ;-)

 regards
 Leon

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RE: Out of Memory exception (hotspot compilation)

2010-06-02 Thread Caldarale, Charles R
 From: Leon Kolchinsky [mailto:lkolc...@gmail.com]
 Subject: Re: Out of Memory exception (hotspot compilation)
 
 I'd like to file a bug report on similar issue I had.
 Can you please tell me where can I do it?

Let's see what your original post had in it...

  Yesterday I've got this error in catalina.out and Tomcat died 
  (I'm attaching hs_err_pid5460.log file):
  #
  # A fatal error has been detected by the Java Runtime Environment:
  #
  # java.lang.OutOfMemoryError: requested 2147483664 bytes for Chunk::new.
  Out of swap space?
  #
  #  Internal Error (allocation.cpp:215), pid=5460, tid=1085901120
  #  Error: Chunk::new
  #
  # JRE version: 6.0_18-b07
  # Java VM: Java HotSpot(TM) 64-Bit Server VM (16.0-b13 mixed mode 
  linux-amd64 )
  # An error report file with more information is saved as:
  # /tmp/hs_err_pid5460.log
  #
  # If you would like to submit a bug report, please visit:
  #   http://java.sun.com/webapps/bugreport/crash.jsp

Does that give you a hint?

 - Chuck


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Re: Out of Memory exception (hotspot compilation)

2010-06-02 Thread Leon Kolchinsky
Yep :)
You're right Charles.

Thanks,
Leon

On Wed, Jun 2, 2010 at 16:27, Caldarale, Charles R 
chuck.caldar...@unisys.com wrote:

  From: Leon Kolchinsky [mailto:lkolc...@gmail.com]
  Subject: Re: Out of Memory exception (hotspot compilation)
 
  I'd like to file a bug report on similar issue I had.
  Can you please tell me where can I do it?

 Let's see what your original post had in it...

   Yesterday I've got this error in catalina.out and Tomcat died
   (I'm attaching hs_err_pid5460.log file):
   #
   # A fatal error has been detected by the Java Runtime Environment:
   #
   # java.lang.OutOfMemoryError: requested 2147483664 bytes for
 Chunk::new.
   Out of swap space?
   #
   #  Internal Error (allocation.cpp:215), pid=5460, tid=1085901120
   #  Error: Chunk::new
   #
   # JRE version: 6.0_18-b07
   # Java VM: Java HotSpot(TM) 64-Bit Server VM (16.0-b13 mixed mode
   linux-amd64 )
   # An error report file with more information is saved as:
   # /tmp/hs_err_pid5460.log
   #
   # If you would like to submit a bug report, please visit:
   #   http://java.sun.com/webapps/bugreport/crash.jsp

 Does that give you a hint?

  - Chuck


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RE: Out of Memory exception (hotspot compilation)

2010-06-01 Thread Caldarale, Charles R
 From: Will Glass-Husain [mailto:wglasshus...@gmail.com]
 Subject: Out of Memory exception (hotspot compilation)
 
 Specifically, the JVM requested 8GB of memory while hotspot was 
 trying to compile the exact same Velocity/Foreach method as Leon's
 example.  I'm running 64 bit JDK 1.6.0_18-b07

 Since it's the exact same method, I'm guessing the Velocity method
 triggers a bug in the hotspot compilation.  Note that we've been
 running this configuration for 5 months

Using the same JDK for those 5 months, or did you recently upgrade?

 - Chuck


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Re: Out of Memory exception (hotspot compilation)

2010-06-01 Thread Will Glass-Husain
The JDK has been the same since early February.  I don't think there's been
any other system upgrades.  (it's possible there was a upgrade to the OS I'm
not aware of, but definitely not the JDK).

WILL

On Tue, Jun 1, 2010 at 12:45 PM, Caldarale, Charles R 
chuck.caldar...@unisys.com wrote:

  From: Will Glass-Husain [mailto:wglasshus...@gmail.com]
  Subject: Out of Memory exception (hotspot compilation)
 
  Specifically, the JVM requested 8GB of memory while hotspot was
  trying to compile the exact same Velocity/Foreach method as Leon's
  example.  I'm running 64 bit JDK 1.6.0_18-b07

  Since it's the exact same method, I'm guessing the Velocity method
  triggers a bug in the hotspot compilation.  Note that we've been
  running this configuration for 5 months

 Using the same JDK for those 5 months, or did you recently upgrade?

  - Chuck


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Re: Out of Memory exception (hotspot compilation)

2010-06-01 Thread Leon Kolchinsky
Hmm,

I'd like to file a bug report on similar issue I had.
Can you please tell me where can I do it?


Cheers,
Leon

On Wed, Jun 2, 2010 at 06:46, Will Glass-Husain wglasshus...@gmail.comwrote:

 The JDK has been the same since early February.  I don't think there's been
 any other system upgrades.  (it's possible there was a upgrade to the OS
 I'm
 not aware of, but definitely not the JDK).

 WILL

 On Tue, Jun 1, 2010 at 12:45 PM, Caldarale, Charles R 
 chuck.caldar...@unisys.com wrote:

   From: Will Glass-Husain [mailto:wglasshus...@gmail.com]
   Subject: Out of Memory exception (hotspot compilation)
  
   Specifically, the JVM requested 8GB of memory while hotspot was
   trying to compile the exact same Velocity/Foreach method as Leon's
   example.  I'm running 64 bit JDK 1.6.0_18-b07
 
   Since it's the exact same method, I'm guessing the Velocity method
   triggers a bug in the hotspot compilation.  Note that we've been
   running this configuration for 5 months
 
  Using the same JDK for those 5 months, or did you recently upgrade?
 
   - Chuck
 
 
  THIS COMMUNICATION MAY CONTAIN CONFIDENTIAL AND/OR OTHERWISE PROPRIETARY
  MATERIAL and is thus for use only by the intended recipient. If you
 received
  this in error, please contact the sender and delete the e-mail and its
  attachments from all computers.
 
 
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