Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Status: Open => Expired Launchpad Janitor expired the question: This question was expired because it remained in the 'Open' state without activity for the last 15 days. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Jinny Kim gave more information on the question: Okay, I think I found the problem. when I try this command (python2 -c "import h5py"), it says that 'no module named h5py. I think h5py is no available for python2.. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Jinny Kim gave more information on the question: I am trying (a) in your reply. I found the path of the module like this: import sys sys.modules['h5py'] Then, I tried (a) by using the path that I got above. but tase said 'no module named h5py'.. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed:
https://answers.launchpad.net/yade/+question/683753
Status: Open => Answered
Jan Stránský proposed the following answer:
> If i try those commands in the terminal, there is no any output...
it means everything is ok and h5py is available for both python 2 and 3.
For some reason, the installation with miniconda (don't know it) is not visible
for Yade. You can try:
a) point python to the actual installation in your script:
import sys
sys.path.append("/path/where/h5py/was/installed")
import h5py
b) use pip
pip install h5py --user
(or without --user, then you would need sudo)
c) use apt
sudo apt install python-h5py
cheers
Jan
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Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Status: Needs information => Open Jinny Kim gave more information on the question: What does Yade says if you type import sys; sys.version ? > '2.7.12 (default, Nov 12 2018, 14:36:49) \n[GCC 5.4.0 20160609]' what is the output of command line commands python -c "import h5py" python3 -c "import h5py" ? > If i try those commands in the terminal, there is no any output... -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Status: Open => Needs information Jan Stránský requested more information: Could be python 2/3 problem. What does Yade says if you type import sys; sys.version ? what is the output of command line commands python -c "import h5py" python3 -c "import h5py" ? thanks Jan -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Status: Needs information => Open Jinny Kim gave more information on the question: Yes, I have installed it. I installed it with Miniconda by following [1]. [1] http://docs.h5py.org/en/stable/quick.html -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Status: Open => Needs information Jan Stránský requested more information: Have you installed h5py to your computer? If yes, how? If no, what version of yade you use? Jan -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Status: Answered => Open Jinny Kim is still having a problem: I tried that, but I got this error: ImportError: No module name h5py. When I run the python script, I am using this command in terminal: yade filename.py.. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Status: Open => Answered Jan Stránský proposed the following answer: Hi, > In order to do this, I need to import 'h5py' module. yes. it should be no problem (or?) > I think I need to add 'h5py'module in Yade library, is it possible? just use h5py in your python script (not sure what you mean by library) cheers Jan -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #683753]: save data in hdf5 file
Question #683753 on Yade changed: https://answers.launchpad.net/yade/+question/683753 Description changed to: Hello all, I want to save particle data in hdf5file. In order to do this, I need to import 'h5py' module. I think I need to add 'h5py'module in Yade library, is it possible? Thank you for your help in advance. Jinny Kim. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
[Yade-users] [Question #683753]: save data in hdf5 file
New question #683753 on Yade: https://answers.launchpad.net/yade/+question/683753 Hello all, I want to save particle data in hdf5file. In order to do this, I need to import 'h5py' module. Can I install this module in Yade software? Thank you for your help in advance. Jinny Kim. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
