Re: [Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
Question #688690 on Yade changed: https://answers.launchpad.net/yade/+question/688690 Status: Answered => Solved gaoxuesong confirmed that the question is solved: I have tried and removed the '\r' following your method. Thanks Jan. Your instructions are really helpful. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
Question #688690 on Yade changed: https://answers.launchpad.net/yade/+question/688690 Jan Stránský proposed the following answer: > on Windows 10 ^M, carriage return, \n\r... is a "windows newline character" (big quotation marks). Usually it is OK, but sometimes you might meet a problem. > what does the '/\r//' mean in your command? 's/\r//' = replace string between first slashes with string between second slashes = replace \r with nothing = remove \r (carriage return) > Which editor can show the carriage return symbols, such as '^M'? e.g. vim. Open a file and run :e ++ff=unix I am sure emacs can do it, too. > but there is no format error. it is not an error, just the newline symbols are different. Text editors should have no problem. But, obviously, SpherePack.load does not count with it. cheers Jan -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
Question #688690 on Yade changed: https://answers.launchpad.net/yade/+question/688690 gaoxuesong posted a new comment: Which editor can show the carriage return symbols, such as '^M'? I have opened the translated file using the Ubuntu default editor but there is no format error. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
Question #688690 on Yade changed: https://answers.launchpad.net/yade/+question/688690 gaoxuesong posted a new comment: Hi Jan, I use a Spyder editor integrated in Anaconda on Windows 10 to conduct the translation code. By the way, what does the '/\r//' mean in your command? Thanks. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
Question #688690 on Yade changed: https://answers.launchpad.net/yade/+question/688690 Status: Open => Answered Jan Stránský proposed the following answer: Hello, if I used the provided file, I got the same error. However, if I used the code to create a new translated file, I could load it without any problem. After diffing the files, it turned out that in the original files there are "^M" (carriage return) symbols at the end of lines. How/where/on which OS have you produced the translated files? using terminal command sed -i 's/\r//' initial_spheres_translate_x.txt fixes the problem cheers Jan -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
Question #688690 on Yade changed:
https://answers.launchpad.net/yade/+question/688690
Status: Needs information => Open
gaoxuesong gave more information on the question:
Sorry for that. Below is my MWE.
1. the initial particles set saved by
sp = pack.SpherePack()
sp.save('initial_spheres-before_translation-x.txt')
Find file here,
https://drive.google.com/file/d/1VIYd7qzb5b4iIAyldT49I1Fjko8XxjhI/view?usp=sharing
2. the python script to translate those particles in x direction,
import numpy as np
data = np.loadtxt('initial_spheres-before-translation-x.txt',
delimiter=' ', skiprows=0)
with open('initial_spheres_translate_x.txt','w') as fd:
for i in range(len(data)):
fd.write('%.9f %.9f %.9f %.5e %d\n' % (data[i,0]+0.5e-3,
data[i,1], data[i,2], data[i,3], -1))
Find file here,
https://drive.google.com/file/d/1P2kVPWFX0VoTzyqVD9uwruodb16Zof5s/view?usp=sharing
3. The yade code to load the translated particles,
from yade import pack,geom,utils
sp = pack.SpherePack()
sp.load('initial_spheres_translate_x.txt')
### the initial particles before translation can be loaded ###
#sp.load('initial_spheres-before-translation-x.txt')
print('load initial_spheres')
sp.toSimulation()
Thanks.
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Re: [Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
Question #688690 on Yade changed: https://answers.launchpad.net/yade/+question/688690 Status: Open => Needs information Jan Stránský requested more information: Please provide a MWE [1] (e.g. a packing with 3 manually inserted spheres), then it will be much easier to help you.. thanks Jan [1] https://www.yade-dem.org/wiki/Howtoask -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
Question #688690 on Yade changed: https://answers.launchpad.net/yade/+question/688690 Status: Needs information => Open gaoxuesong gave more information on the question: The error is shown as, RuntimeError: bad lexical cast: source type value could not be interpreted as target Thanks. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
Question #688690 on Yade changed: https://answers.launchpad.net/yade/+question/688690 Status: Open => Needs information Robert Caulk requested more information: >there is an format error when reading the file What is the error? -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
[Yade-users] [Question #688690]: pack.SpherePack.save() function saved particles data format
New question #688690 on Yade:
https://answers.launchpad.net/yade/+question/688690
Hi. I have a file of spherical particles saved by function of
pack.SpherePack().save(). It has the format as follows,
0.000919246 0.000859971 0.000602774 1.20067e-05 -1
0.000959836 0.00055149 0.000975021 2.11065e-05 -1
.
I want to translate all the particles in x direction and conduct it by the
following python code,
===
===
import numpy as np
data = np.loadtxt('initial_spheres.txt', delimiter=' ', skiprows=0)
with open('initial_spheres_translate_x.txt','w') as fd:
for i in range(len(data)):
fd.write('%.9f %.9f %.9f %.5e %d\n' % (data[i,0]+0.5e-3, data[i,1],
data[i,2], data[i,3], -1))
===
===
and i got the data as this,
0.001919246 0.000859971 0.000602774 1.20067e-05 -1
0.001959836 0.000551490 0.000975021 2.11065e-05 -1
The format seems the same, however, there is an format error when reading the
file by pack.SpherePack().load() function.
By the way, i have tried the delimiter as space and tab and both don't work.
Thanks.
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