Re: [Yade-users] [Question #688789]: How to restart a simulation from a saved point with restoring geometry movement?

2020-02-17 Thread gaoxuesong
Question #688789 on Yade changed:
https://answers.launchpad.net/yade/+question/688789

Status: Answered => Solved

gaoxuesong confirmed that the question is solved:
Hi Jan,

Thank you very much. Yes, you are right. The simulation will proceed if
i use the original O.engines.

I've got some tips:
1. There's no need to save the ids of the facets binded to a movement engine. 
Even though i can not get the ids in the restart simulation, the engine knows 
those facets. 
2. The functions invoked by PyRunner should be included in the restart python 
script and they can be modified. 
3.  The arguments in Rotation and Translation engine should be assigned 
explicitly when updated. 

Thanks.

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Re: [Yade-users] [Question #688789]: How to restart a simulation from a saved point with restoring geometry movement?

2020-02-16 Thread Jan Stránský
Question #688789 on Yade changed:
https://answers.launchpad.net/yade/+question/688789

Status: Open => Answered

Jan Stránský proposed the following answer:
Hello,

you O.load a simulation and newly set exactly the same list of engines, why?
Why simply not let the loaded engines?
With original O.engines, the cylinder does rotate and move..

With newly set not, I guess it is a gotcha, but before more detailed
investigation, please consider using originally O.loaded engines

cheers
Jan

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[Yade-users] [Question #688789]: How to restart a simulation from a saved point with restoring geometry movement?

2020-02-14 Thread gaoxuesong
New question #688789 on Yade:
https://answers.launchpad.net/yade/+question/688789

Hi. I want to try some parameters that come into play at a late time point, 
like 1.0s. So i save the simulation at 0.9s and then restart it by O.load() 
method, followed by trying new parameters. 

I have a roller constructed by facets doing translation and rotation controlled 
by RotationEngine and TranslationEngine, respectively. The parameter of "ids" 
in those engines is used to bond the engine to the roller (facets).  

I use the pickle module to save the roller factets ids into a file during the 
first run and load these ids again in the restart run. So in the new run, the 
engines enable to find those roller facets to control. I have checked those ids 
of facets and they are right. 

The problem is that the roller can not rotate or translate in the restart run.  

My MWE is as the following, ( the scenario) 
https://drive.google.com/file/d/1kQN9ZHgJzktLZQ57nWBMbXDa2joxDzUz/view?usp=sharing
 )
the first run saves every 0.05s and the restart run loads data at time 0f 0.3s. 
Because the rotation is active till 0.4s, the roller in the restart run should 
rotate at the beginning. It's stationary yet. 

## the first run  to save at a time point  ##

#!/usr/bin/python
#-*- coding: utf-8 -*-
from yade import pack,geom,utils  
import numpy as np
from yade import qt 

## material 
matSph = CohFrictMat(density=8e11, young=193e9, poisson=0.3)
Mat = O.materials.append(matSph)

## roller 
radiusSweeper = 0.3e-3 
lengthSweeper = 1.0e-3 
numSweeperParts = 20   
Sweeper=[]
for i in np.linspace(0, 2*pi, num=numSweeperParts, endpoint=True):
Sweeper.append(Vector3(radiusSweeper*cos(-i), 0.0, 
radiusSweeper*sin(-i)+1.3e-3))
SweeperP=[Sweeper, [p+Vector3(0.0,lengthSweeper,0.0) for p in Sweeper]]
SweeperPoly = pack.sweptPolylines2gtsSurface(SweeperP, threshold=1e-7)
SweeperIDs = O.bodies.append(pack.gtsSurface2Facets(SweeperPoly, wire=False, 
material=Mat))
## save roller facets' id for restart ### 
import pickle 
fd = open('rollerids.txt', 'wb')
pickle.dump(SweeperIDs, fd)
fd.close() 

## platform 
O.bodies.append(geom.facetBox((2.0e-3,0.5e-3,0.8e-3),(2.0e-3,0.5e-3,0.2e-3), 
wallMask=63, wire=False, material=Mat))
 
### process parameters 
velsw = 2.5e-3 ## translation vel 
angvelsw = -50.0  ## rotation vel  
t1 = 0.4 ## 0~0.2s, rotation + translation 
t2 = 0.8 ## 0.2~0.4, translation   
def change_motion():
if O.time < t1:
rotaEngineSw.dead = False 
transEngineSw.dead = False
rotaEngineSw.zeroPoint = (O.time*velsw, 0, 1.30e-3)
elif O.time < t2:
rotaEngineSw.angularVelocity = 0.0   
transEngineSw.velocity = velsw 
else:
transEngineSw.velocity = 0.0 

## save per 0.05s 
svdt = 0.05
saveTime = 0 
def svfun():
global svdt, saveTime  
if O.time> saveTime:
O.save('time-'+str(O.time)[:4])
saveTime += svdt  
if O.time>1.2:
O.pause() 

O.engines=[
ForceResetter(),
InsertionSortCollider([Bo1_Sphere_Aabb(),Bo1_Facet_Aabb()]),
InteractionLoop(
   [Ig2_Sphere_Sphere_ScGeom6D(),Ig2_Facet_Sphere_ScGeom6D()],
   [Ip2_CohFrictMat_CohFrictMat_CohFrictPhys()],
   [Law2_ScGeom6D_CohFrictPhys_CohesionMoment()]
),
PyRunner(iterPeriod=100,command='change_motion()'),
RotationEngine(dead=True, label='rotaEngineSw', rotateAroundZero=True, 
zeroPoint=(0,0,1.30e-3), angularVelocity=angvelsw, rotationAxis=[0,1,0], 
ids=SweeperIDs)+ \
TranslationEngine(dead=True, label='transEngineSw', 
translationAxis=[1,0,0], velocity=velsw, ids=SweeperIDs),
NewtonIntegrator(damping=0.75, exactAsphericalRot=True, 
gravity=(0,0,-9.81)),
PyRunner(iterPeriod=100,command='svfun()'),
]

## particles 
sp=pack.SpherePack()
sp.makeCloud((0.5e-3,0,1.0e-3),(2.0e-3,1e-3,1.4e-3),rMean=40e-6,rRelFuzz=0.5)
sp.toSimulation(material=Mat)

O.dt = 0.85*utils.PWaveTimeStep()

#O.run()


 the restart run  
##

#!/usr/bin/python
#-*- coding: utf-8 -*-
from yade import pack,geom,utils  
import numpy as np
from yade import qt 

## load a saved data 
O.load('time-0.30')

import pickle 
fd = open('rollerids.txt', 'rb')
SweeperIDs = pickle.load(fd) 
fd.close()

### process parameters 
velsw = 2.5e-3 ## translation vel 
angvelsw = -50.0  ## rotation vel  
t1 = 0.4 ## 0~0.2s, rotation + translation 
t2 = 0.8 ## 0.2~0.4, translation   
def change_motion():
if O.time < t1:
rotaEngineSw.dead = False 
transEngineSw.dead = False
rotaEngineSw.zeroPoint = (O.time*velsw, 0, 1.30e-3)
elif O.time < t2:
rotaEngineSw.angularVelocity = 0.0   
transEngineSw.velocity = velsw 
else:
transEngineSw.velocity = 0.0 

## save per 0.05s 
svdt = 0.05
saveTime = 0 
def svfun():
global svdt, saveTime  
if O.time>saveTime:
O.save('time-r-'+str(O.time)[:4])
saveTime += svdt  
if