[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Chao Sun updated YARN-10324:
Target Version/s: 3.3.3, 2.7.8 (was: 2.7.8, 3.3.2)
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Assignee: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch, YARN-10324.002.patch,
> YARN-10324.003.patch, image-2021-05-21-17-48-03-476.png
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
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[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Yao Guangdong updated YARN-10324:
-
Attachment: YARN-10324.003.patch
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Assignee: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch, YARN-10324.002.patch,
> YARN-10324.003.patch, image-2021-05-21-17-48-03-476.png
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
--
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[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Yao Guangdong updated YARN-10324:
-
Attachment: (was: YARN-10324.003.patch)
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Assignee: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch, YARN-10324.002.patch,
> YARN-10324.003.patch, image-2021-05-21-17-48-03-476.png
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
--
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[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Qi Zhu updated YARN-10324:
--
Attachment: image-2021-05-21-17-48-03-476.png
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Assignee: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch, YARN-10324.002.patch,
> YARN-10324.003.patch, image-2021-05-21-17-48-03-476.png
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
--
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[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Yao Guangdong updated YARN-10324:
-
Attachment: YARN-10324.003.patch
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Assignee: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch, YARN-10324.002.patch,
> YARN-10324.003.patch
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
--
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[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Wei-Chiu Chuang updated YARN-10324:
---
Target Version/s: 3.3.2, 2.7.8 (was: 2.7.8, 3.3.1)
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch, YARN-10324.002.patch
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
--
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[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Yao Guangdong updated YARN-10324:
-
Attachment: YARN-10324.002.patch
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch, YARN-10324.002.patch
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
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[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Brahma Reddy Battula updated YARN-10324:
Target Version/s: 2.7.8, 3.3.1 (was: 2.7.8, 3.3.0)
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
--
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[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Yao Guangdong updated YARN-10324:
-
Target Version/s: 2.7.8, 3.3.0 (was: 2.7.7, 3.3.0)
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
--
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[jira] [Updated] (YARN-10324) Fetch data from NodeManager may case read timeout when disk is busy
[
https://issues.apache.org/jira/browse/YARN-10324?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Yao Guangdong updated YARN-10324:
-
Attachment: YARN-10324.001.patch
> Fetch data from NodeManager may case read timeout when disk is busy
> ---
>
> Key: YARN-10324
> URL: https://issues.apache.org/jira/browse/YARN-10324
> Project: Hadoop YARN
> Issue Type: Improvement
> Components: auxservices
>Affects Versions: 2.7.0, 3.2.1
>Reporter: Yao Guangdong
>Priority: Minor
> Labels: patch
> Attachments: YARN-10324.001.patch
>
>
> With the cluster size become more and more big.The cost time on Reduce
> fetch Map's result from NodeManager become more and more long.We often see
> the WARN logs in the reduce's logs as follow.
> {quote}2020-06-19 15:43:15,522 WARN [fetcher#8]
> org.apache.hadoop.mapreduce.task.reduce.Fetcher: Failed to connect to
> TX-196-168-211.com:13562 with 5 map outputs
> java.net.SocketTimeoutException: Read timed out
> at java.net.SocketInputStream.socketRead0(Native Method)
> at java.net.SocketInputStream.socketRead(SocketInputStream.java:116)
> at java.net.SocketInputStream.read(SocketInputStream.java:171)
> at java.net.SocketInputStream.read(SocketInputStream.java:141)
> at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
> at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:735)
> at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:678)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1587)
> at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
> at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.verifyConnection(Fetcher.java:434)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.setupConnectionsWithRetry(Fetcher.java:400)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.openShuffleUrl(Fetcher.java:271)
> at
> org.apache.hadoop.mapreduce.task.reduce.Fetcher.copyFromHost(Fetcher.java:330)
> at org.apache.hadoop.mapreduce.task.reduce.Fetcher.run(Fetcher.java:198)
> {quote}
> We check the NodeManager server find that the disk IO util and connections
> became very high when the read timeout happened.We analyze that if we have
> 20,000 maps and 1,000 reduces which will make NodeManager generate 20 million
> times IO stream operate in the shuffle phase.If the reduce fetch data size is
> very small from map output files.Which make the disk IO util become very high
> in big cluster.Then read timeout happened frequently.The application finished
> time become longer.
> We find ShuffleHandler have IndexCache for cache file.out.index file.Then we
> want to change the small IO to big IO which can reduce the small disk IO
> times. So we try to cache all the small file data(file.out) in memory when
> the first fetch request come.Then the others fetch request only need read
> data from memory avoid disk IO operation.After we cache data to memory we
> find the read timeout disappeared.
>
--
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