Date: Tuesday, May 14, 2019 @ 10:24:15 Author: archange Revision: 467207
archrelease: copy trunk to community-x86_64 Added: pnetcdf-openmpi/repos/community-x86_64/PKGBUILD (from rev 467206, pnetcdf-openmpi/trunk/PKGBUILD) Deleted: pnetcdf-openmpi/repos/community-x86_64/PKGBUILD pnetcdf-openmpi/repos/community-x86_64/fix-parallel-tests.patch --------------------------+ PKGBUILD | 88 ++++------ fix-parallel-tests.patch | 388 --------------------------------------------- 2 files changed, 39 insertions(+), 437 deletions(-) Deleted: PKGBUILD =================================================================== --- PKGBUILD 2019-05-14 10:23:54 UTC (rev 467206) +++ PKGBUILD 2019-05-14 10:24:15 UTC (rev 467207) @@ -1,49 +0,0 @@ -# Maintainer: Bruno Pagani <archa...@archlinux.org> - -_pkg=pnetcdf -_mpi=openmpi -pkgname=${_pkg}-${_mpi} -pkgver=1.11.0 -pkgrel=2 -pkgdesc="Parallel I/O Library for NetCDF File Access (${_mpi} version)" -arch=('x86_64') -url="https://parallel-netcdf.github.io/" -license=('custom') -depends=("${_mpi}" "netcdf-${_mpi}") -makedepends=('gcc-fortran') -checkdepends=('inetutils') -provides=('parallel-netcdf' 'parallel-netcdf-openmpi') -conflicts=('parallel-netcdf' 'parallel-netcdf-openmpi') -replaces=('parallel-netcdf' 'parallel-netcdf-openmpi') -options=('staticlibs') -source=("${url}/Release/${_pkg}-${pkgver}.tar.gz" - fix-parallel-tests.patch) -sha1sums=('a13fd24953abce1f3fd7aa94fd66f1b9895182de' - '0d7ea16dddb89153aacad83e954b66ba01fb2c38') - -prepare() { - cd ${_pkg}-${pkgver} - patch -p1 -i ../fix-parallel-tests.patch -} - -build() { - cd ${_pkg}-${pkgver} - - export CPPFLAGS="${CPPFLAGS} -fPIC" - ./configure --prefix=/usr --enable-shared --enable-netcdf4 - make -} - -check() { - cd ${_pkg}-${pkgver} - # One failure to investigate - make check || warning "Tests failed" - make ptest -} - -package() { - cd ${_pkg}-${pkgver} - make DESTDIR="${pkgdir}" install - - install -Dm644 COPYRIGHT -t "${pkgdir}"/usr/share/licenses/${_pkg} -} Copied: pnetcdf-openmpi/repos/community-x86_64/PKGBUILD (from rev 467206, pnetcdf-openmpi/trunk/PKGBUILD) =================================================================== --- PKGBUILD (rev 0) +++ PKGBUILD 2019-05-14 10:24:15 UTC (rev 467207) @@ -0,0 +1,39 @@ +# Maintainer: Bruno Pagani <archa...@archlinux.org> + +_pkg=pnetcdf +_mpi=openmpi +pkgname=${_pkg}-${_mpi} +pkgver=1.11.2 +pkgrel=1 +pkgdesc="Parallel I/O Library for NetCDF File Access (${_mpi} version)" +arch=(x86_64) +url="https://parallel-netcdf.github.io/" +license=(custom) +depends=("${_mpi}" "netcdf-${_mpi}") +makedepends=(gcc-fortran) +checkdepends=(inetutils) +provides=(parallel-netcdf parallel-netcdf-openmpi) +conflicts=(parallel-netcdf parallel-netcdf-openmpi) +replaces=(parallel-netcdf parallel-netcdf-openmpi) +options=(staticlibs) +source=("${url}/Release/${_pkg}-${pkgver}.tar.gz") +sha1sums=(cf310a037846a5722c05525b0a77273bea8059a0) + +build() { + cd ${_pkg}-${pkgver} + autoreconf -vfi + ./configure --prefix=/usr --enable-shared --enable-netcdf4 + make LIBTOOLFLAGS=--verbose +} + +check() { + cd ${_pkg}-${pkgver} + make check + make ptest +} + +package() { + cd ${_pkg}-${pkgver} + make DESTDIR="${pkgdir}" install + install -Dm644 COPYRIGHT -t "${pkgdir}"/usr/share/licenses/${_pkg} +} Deleted: fix-parallel-tests.patch =================================================================== --- fix-parallel-tests.patch 2019-05-14 10:23:54 UTC (rev 467206) +++ fix-parallel-tests.patch 2019-05-14 10:24:15 UTC (rev 467207) @@ -1,388 +0,0 @@ -From bbd79e2fae98603f69ad45862d6758336c880ecb Mon Sep 17 00:00:00 2001 -From: Wei-keng Liao <wkl...@users.noreply.github.com> -Date: Wed, 26 Dec 2018 11:44:45 -0600 -Subject: [PATCH] Bug fix to ignore NC_ENOTENABLED if PnetCDF was not built - with --enable-profiling. - ---- - examples/C/block_cyclic.c | 2 +- - examples/C/bput_varn_int64.c | 2 +- - examples/C/bput_varn_uint.c | 2 +- - examples/C/collective_write.c | 2 +- - examples/C/column_wise.c | 2 +- - examples/C/create_open.c | 2 +- - examples/C/fill_mode.c | 2 +- - examples/C/flexible_api.c | 2 +- - examples/C/get_info.c | 2 +- - examples/C/get_vara.c | 2 +- - examples/C/ghost_cell.c | 2 +- - examples/C/global_attributes.c | 2 +- - examples/C/hints.c | 2 +- - examples/C/i_varn_int64.c | 2 +- - examples/C/mput.c | 2 +- - examples/C/nonblocking_write.c | 2 +- - examples/C/nonblocking_write_in_def.c | 2 +- - examples/C/pthread.c | 2 +- - examples/C/put_vara.c | 2 +- - examples/C/put_varn_float.c | 2 +- - examples/C/put_varn_int.c | 2 +- - examples/C/req_all.c | 2 +- - examples/C/time_var.c | 2 +- - examples/C/transpose.c | 2 +- - examples/C/transpose2D.c | 2 +- - examples/C/vard_int.c | 2 +- - examples/C/vard_mvars.c | 2 +- - sneak_peek.md | 6 ++++-- - 28 files changed, 31 insertions(+), 29 deletions(-) - -diff --git a/examples/C/block_cyclic.c b/examples/C/block_cyclic.c -index 90bf029e..0b47608e 100644 ---- a/examples/C/block_cyclic.c -+++ b/examples/C/block_cyclic.c -@@ -121,7 +121,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/bput_varn_int64.c b/examples/C/bput_varn_int64.c -index d57c8f86..3f8c643b 100644 ---- a/examples/C/bput_varn_int64.c -+++ b/examples/C/bput_varn_int64.c -@@ -142,7 +142,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/bput_varn_uint.c b/examples/C/bput_varn_uint.c -index 26cb3c70..693c2af3 100644 ---- a/examples/C/bput_varn_uint.c -+++ b/examples/C/bput_varn_uint.c -@@ -118,7 +118,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/collective_write.c b/examples/C/collective_write.c -index 8e3fa830..7d834a2a 100644 ---- a/examples/C/collective_write.c -+++ b/examples/C/collective_write.c -@@ -110,7 +110,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/column_wise.c b/examples/C/column_wise.c -index f03085a5..675dd54a 100644 ---- a/examples/C/column_wise.c -+++ b/examples/C/column_wise.c -@@ -108,7 +108,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/create_open.c b/examples/C/create_open.c -index d6a66b21..44b00c31 100644 ---- a/examples/C/create_open.c -+++ b/examples/C/create_open.c -@@ -72,7 +72,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/fill_mode.c b/examples/C/fill_mode.c -index 3bb9fd1b..462f2f16 100644 ---- a/examples/C/fill_mode.c -+++ b/examples/C/fill_mode.c -@@ -105,7 +105,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/flexible_api.c b/examples/C/flexible_api.c -index 3d0ade60..020d4687 100644 ---- a/examples/C/flexible_api.c -+++ b/examples/C/flexible_api.c -@@ -122,7 +122,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/get_info.c b/examples/C/get_info.c -index ddb49463..578a8d73 100644 ---- a/examples/C/get_info.c -+++ b/examples/C/get_info.c -@@ -83,7 +83,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/get_vara.c b/examples/C/get_vara.c -index 709109cb..4c859b2c 100644 ---- a/examples/C/get_vara.c -+++ b/examples/C/get_vara.c -@@ -101,7 +101,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/ghost_cell.c b/examples/C/ghost_cell.c -index b84b1420..221c92fd 100644 ---- a/examples/C/ghost_cell.c -+++ b/examples/C/ghost_cell.c -@@ -117,7 +117,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/global_attributes.c b/examples/C/global_attributes.c -index 10256b5e..f25b56af 100644 ---- a/examples/C/global_attributes.c -+++ b/examples/C/global_attributes.c -@@ -79,7 +79,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/hints.c b/examples/C/hints.c -index 4e7f1c6e..e969377e 100644 ---- a/examples/C/hints.c -+++ b/examples/C/hints.c -@@ -79,7 +79,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/i_varn_int64.c b/examples/C/i_varn_int64.c -index fd4b37d2..6e37bf7e 100644 ---- a/examples/C/i_varn_int64.c -+++ b/examples/C/i_varn_int64.c -@@ -119,7 +119,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/mput.c b/examples/C/mput.c -index 37c039fb..14c3b59c 100644 ---- a/examples/C/mput.c -+++ b/examples/C/mput.c -@@ -92,7 +92,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/nonblocking_write.c b/examples/C/nonblocking_write.c -index fab8557d..0bfe721b 100644 ---- a/examples/C/nonblocking_write.c -+++ b/examples/C/nonblocking_write.c -@@ -83,7 +83,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/nonblocking_write_in_def.c b/examples/C/nonblocking_write_in_def.c -index 7502a2d4..85bceec8 100644 ---- a/examples/C/nonblocking_write_in_def.c -+++ b/examples/C/nonblocking_write_in_def.c -@@ -85,7 +85,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/pthread.c b/examples/C/pthread.c -index 97843440..a4cf5196 100644 ---- a/examples/C/pthread.c -+++ b/examples/C/pthread.c -@@ -114,7 +114,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/put_vara.c b/examples/C/put_vara.c -index 32e71ef6..8efed57d 100644 ---- a/examples/C/put_vara.c -+++ b/examples/C/put_vara.c -@@ -106,7 +106,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/put_varn_float.c b/examples/C/put_varn_float.c -index 8d96312c..34577093 100644 ---- a/examples/C/put_varn_float.c -+++ b/examples/C/put_varn_float.c -@@ -84,7 +84,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/put_varn_int.c b/examples/C/put_varn_int.c -index c3862c55..7889b875 100644 ---- a/examples/C/put_varn_int.c -+++ b/examples/C/put_varn_int.c -@@ -92,7 +92,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/req_all.c b/examples/C/req_all.c -index 998bcbc3..0031691e 100644 ---- a/examples/C/req_all.c -+++ b/examples/C/req_all.c -@@ -100,7 +100,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/time_var.c b/examples/C/time_var.c -index a8ebde72..a378c140 100644 ---- a/examples/C/time_var.c -+++ b/examples/C/time_var.c -@@ -107,7 +107,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/transpose.c b/examples/C/transpose.c -index 202096fc..72d11791 100644 ---- a/examples/C/transpose.c -+++ b/examples/C/transpose.c -@@ -81,7 +81,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/transpose2D.c b/examples/C/transpose2D.c -index 5d3f326a..b62d11b5 100644 ---- a/examples/C/transpose2D.c -+++ b/examples/C/transpose2D.c -@@ -102,7 +102,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/vard_int.c b/examples/C/vard_int.c -index 5bad1e2f..7b13f47f 100644 ---- a/examples/C/vard_int.c -+++ b/examples/C/vard_int.c -@@ -92,7 +92,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - } -diff --git a/examples/C/vard_mvars.c b/examples/C/vard_mvars.c -index 63eb9651..a2623524 100644 ---- a/examples/C/vard_mvars.c -+++ b/examples/C/vard_mvars.c -@@ -130,7 +130,7 @@ pnetcdf_check_mem_usage(MPI_Comm comm) - printf("heap memory allocated by PnetCDF internally has %lld bytes yet to be freed\n", - sum_size); - } -- else { -+ else if (err != NC_ENOTENABLED) { - printf("Error at %s:%d: %s\n", __FILE__,__LINE__,ncmpi_strerror(err)); - nerrs++; - }