[aroma.affymetrix] about pgf/clf files

2009-06-08 Thread chunjiang he
Hi all, Anyone can help me? I am looking for: pgf/clf files for exon array analysis (mouse and human) CustomCDF mappings tools for summarizing. Thanks a lot. Best, Jiang --~--~-~--~~~---~--~~ When reporting problems on aroma.affymetrix, make sure 1) to run the

[aroma.affymetrix] Re: about pgf/clf files

2009-06-08 Thread Lakshmanan Iyer
Hi It should be available as part of the Affy libraries. check out: http://www.affymetrix.com/support/technical/libraryfilesmain.affx -Lax On Mon, Jun 8, 2009 at 10:40 AM, chunjiang he camel...@gmail.com wrote: Hi all, Anyone can help me? I am looking for: pgf/clf files for exon array

[aroma.affymetrix] Re: SNP6 CNV analysis with Technical replicates

2009-06-08 Thread Henrik Bengtsson
Hi. On Mon, Jun 8, 2009 at 1:53 PM, marcomazu.c...@gmail.com wrote: Dear Henrik,  I have 2 samples hzbridiyed on SNP6 in respctively 5 and 6 replicates. I would like to pool them ann estimate the relative CNVs. Is this fragment of code doing that? Or you have any other suggestions? cdf

[aroma.affymetrix] Re: about pgf/clf files

2009-06-08 Thread Henrik Bengtsson
On Mon, Jun 8, 2009 at 8:18 PM, chunjiang hecamel...@gmail.com wrote: Hi, Thanks. I also have some questions when I use the apt-cel-transformer tool. Does the command like this: apt-cel-transformer.exe --clf-file MoEx-1_0-st-v1.r2.clf -c rma.bg... -o output *.cel I cannot run through it