Thank you much --
On Jul 1, 2009, at 10:22 AM, Henrik Bengtsson wrote:
>
> Hi,
>
> all constructor functions defined via setConstructorS3() get class
> 'Class' and all such Class functions must accept a call without
> arguments. That is, you must design Sample() such that you can call
> it a
Hi,
all constructor functions defined via setConstructorS3() get class
'Class' and all such Class functions must accept a call without
arguments. That is, you must design Sample() such that you can call
it as
obj <- Sample()
You can differentiate between NULL and say numeric(0).
The reason
I apologize in advance if this is not the ideal place for a question
about building packages with R.oo/R.methodsS3
When I generate a new S3 class, such as in the following:
setConstructorS3("Sample", function(chromosomeLengths=NULL, ...) {
if (is.null(chromosomeLengths)) {
if (length(
Dear Mark,
I'm wondering whether there is relationship between the array
quality, in terms of NUSE (and RLE?) plot, and the FIRMAGene scores.
Do you expect that a low quality array will show higher FIRMAGene
scores respect to a high quality array?
Indeed, from preliminary analysis, it seems tha
The reason lies in the messages:
DETAILS: The framework (axes, cytoband etc) for each figure is
generated but when the data points are to be plotted, the RColorBrewer
package is loaded and since it is missing an error is thrown.
So, install RColorBrewer, e.g. install.packages("RColorBrewer") a
Dear Henrik,
Thank you for your suggestions.
The answer to your first reply is that the security settings prevent
us from using biocLite() etc so we need to download all files and
usually run install scripts.
Following your suggestion I have now installed DNAcopy v 1.19.2 which
caused some prob
Dear Henrik,
I deleted reports/CLP/ACC,ra,-XY,AVG,+300,A+B,FLN,-XY/ and all its
subdirectories. Then did: process(ce, arrays=1, chromosomes=19, verbose=-20)
and here is the entire output:
Generating ChromosomeExplorer report...
Setting up ChromosomeExplorer report files...
Copying template fi
