Hi.
On Tue, Jul 21, 2009 at 9:23 PM, Stellaw Chaostellaw.c...@gmail.com wrote:
Dear aroma.affymetrix developers,
I am a little bit confused while using ur package aroma.affymetrix to
process my dataset.
The following is my code——
setwd(C:/Array Files_CP2Bonly)
library(aroma.affymetrix)
To add to the list of references, see also:
Yamamoto, G.; Nannya, Y.; Kato, M.; Sanada, M.; Levine, R. L.;
Kawamata, N.; Hangaishi, A.; Kurokawa, M.; Chiba, S.; Gilliland, D.
G.; Koeffler, H. P. Ogawa, S. Highly sensitive method for genomewide
detection of allelic composition in nonpaired,
Dear Henrik,
thans for the useful answers!
RAS = Relative Allele Scorel is normally used as a frequency estimate
for pooled DNA experiments. I saw around that SNP6.0 seems not to be
used for this scope before, so there are not really validated methods
to estimate frequencies from it.
1. The
Hi Henrik,
Much thanks!I have tried extractMatrix and it works!
Yet another question merges...I used RMAExpress to extract the
expression level matrix some time ago (background adjusted, quantile
normalized and summarized using PLM) . I thought the outcomes of these
two preprocessing softwares
