For your information: The unit fragment length (UFL) and the unit genome position (UGP) annotation files for the Affymetrix GenomeWideSNP_6 chip type has been updated, and available at:
http://aroma-project.org/chipTypes/GenomeWideSNP_6 The source was the two Affymetrix NetAffx CSV files GenomeWideSNP_6.cn.na30.annot.csv (777MB) and GenomeWideSNP_6.na30.annot.csv (1.32GB). The updates are only minor from previous versions. More details below. /Henrik HISTORY: # UGP: # o na27.1 -> na30 # No differences # o na27 -> na27.1 # No differences # o na26 -> na27 # Two units (932039, 1872834) where moved from ChrX to ChrY. # Same location. # o na24 -> na26 # Only minor modifications for non-missing values: # - three loci changed chromosomes # - an additional 23 loci changed positions, of which only 17 moved # more than 2 base pairs. # UFL: # o na27.1 -> na30 # - No changes. # o na27 -> na27.1 # - No changes. # o na26 -> na27 # - No changes. # o na24 -> na26 # - All changes are for SNP units. # - There are 6 NspI and 14 StyI changes in SNP fragment lengths, # which some are only minor. # - There are 1108 more SNPs that now have missing values. -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe from this group, send email to aroma-affymetrix-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en
