Hi Henrik,
Thanks a lot for the help.
For sm <- CbsModel(dsTR, ref=dfR, tags="HapMapRef"), you mean sm <-
CbsModel(dsT, ref=dfR, tags="HapMapRef"), right?
Thanks,
Sean
On Thu, Aug 1, 2013 at 6:00 PM, Henrik Bengtsson <
henrik.bengts...@aroma-project.org> wrote:
> On Mon, Jul 29, 2013 at 7:4
On Mon, Jul 29, 2013 at 7:45 PM, ying chen wrote:
> Hi Henrik,
> Thanks a lot for the help!
> Sorry I have more questions. I am following "How to: Calculate total copy
> number ratios from total (non-polymorphic) signals" and "Vignette: Total
> copy-number segmentation (non-paired CBS)", but I am
91]
>> Path (to the first file):
>> rawCnData/Tumor,ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY/GenomeWideSNP_6
>> Total file size: 2088.72 MB
>> RAM: 0.37MB
>> Reference:
>> RAM: 0.00MB
>> >
>> > fit(sm, verbose=-10)
>> Building tuple of referen
uple of reference sets...
> Type of reference: median
> No reference available.
> Calculating average copy-number signals...
> Retrieving average unit signals across 291 arrays...
>AromaUnitTotalCnBinaryFile:
>Name: .average-signals-median-mad
>Tags: 8143f7733336d59b4c432de
143f776d59b4c432debaf4bb288.asb
File size: 7.18 MB (7526027 bytes)
RAM: 0.00 MB
Number of data rows: 1881415
File format: v1
Dimensions: 1881415x1
Column classes: double
Number of bytes per column: 4
Footer: 20130801 10:20:33
EDTAffymetrixGenomeWideSNP_6,Full29160c565ccf62
