[aroma.affymetrix] Re: CRMA v2 errors

2010-06-17 Thread Smaug72
Dear Henrik, unfortunately we are faced with another problem. We processed several CEL files with CRMAv2 as decribed by vignette: http://aroma-project.org/vignettes/CRMAv2 We received no errors during the run. The problem is that we cannot process the CEL files, which are generated. The CEL-File

[aroma.affymetrix] Re: CRMA v2 errors

2010-05-16 Thread Smaug72
Dear Henrik, > SOLUTION: > Go to the > probeData/HapMap270,6.0,CEU,testSet,ACC,ra,-XY,BPN,-XY/GenomeWideSNP_6/ > directory and delete any files with file extension *.tmp (or > *.tmp.tmp, *.tmp.tmp.tmp and so on).  Then restart the script.  You > can keep (the two) *.CEL files. > > Did it help? y

[aroma.affymetrix] Re: CRMA v2 errors

2010-05-12 Thread Smaug72
Dear Henrik, thank you very much for your reply. Again I installed R and CRMA v2 on a new virtual machine (Suse 11.2), so that I can step back if necessary. This time I received 21 warnings after the installation process. But no error was detected. Nevertheless the same error (unexpected symbol in

[aroma.affymetrix] CRMA v2 errors

2010-05-11 Thread Smaug72
Dear Henrik Bengtsson, we would like to use the CRMA v2 for our work. Unfortunately we receive errors. First we use a Linux system (Suse 11.2). I installed R (version 2.11.0) without any problems. Afterwards I followed your instructions on your webpage (http://aroma- project.org/install) to insta