Re: [aroma.affymetrix] Errors occurred in the PSCBS analysis

2015-02-23 Thread Chengyu Liu
Thanks Henrik, You are right. The sample is really noisy. On Wednesday, February 18, 2015 at 11:23:13 PM UTC+2, Henrik Bengtsson wrote: > > I'll try to catch up with a few questions; comments below. > > On Mon, Feb 9, 2015 at 3:52 AM, Chengyu Liu > wrote: > > Hi, > > > > I am doing allele-

Re: [aroma.affymetrix] Errors occurred in the PSCBS analysis

2015-02-18 Thread Henrik Bengtsson
I'll try to catch up with a few questions; comments below. On Mon, Feb 9, 2015 at 3:52 AM, Chengyu Liu wrote: > Hi, > > I am doing allele-specific analysis using PSCBS package. I have paired > tumor-normal matched samples. > For one of the samples, i got an error which is like > > at #06. lappl

[aroma.affymetrix] Errors occurred in the PSCBS analysis

2015-02-09 Thread Chengyu Liu
Hi, I am doing allele-specific analysis using PSCBS package. I have paired tumor-normal matched samples. For one of the samples, i got an error which is like at #06. lapply(names.T[8:length(names.T)], function(x) { print(x) y <- grep(x, names(df)) if