Re: Where can I download the CDF file? (Was: Re: [aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, SnpChipEffectSet))

2010-07-01 Thread Henrik Bengtsson
Please see FAQ. 2007-05-24 on http://aroma-project.org/FAQ /Henrik On Fri, Jun 25, 2010 at 10:49 AM, Liang Cheng vikingch...@gmail.com wrote: Henrik, I found that if I want to read CEL files, I have to get the CDF files. Where can I get the ones mentioned in your slider, especially the 250k

Re: [aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, SnpChipEffectSet)

2010-06-25 Thread Liang Cheng
Hi Henrik, I read your file aroma.affymetrix :Analysis of small to very large Affymetrix data sets. In page 25, we have to know the chip type in order to read the raw data. How can I know the chip type? Currently I know that my chip type is 250k and there are two types of 250K chips. thank you,

[aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, SnpChipEffectSet)

2010-06-23 Thread mortiz
hi everyone, im trying to develop a function based on FragmentLengthNormalization, but when i try to execute my new function it gives me the next error message: Error in process.NormalRegions(normalReg, verbose = verbose) : attempt to apply non-function sessionInfo() R version 2.9.2

Re: [aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, SnpChipEffectSet)

2010-06-23 Thread Henrik Bengtsson
Hi. On Wed, Jun 23, 2010 at 11:04 AM, mortiz mortiz...@gmail.com wrote: hi everyone, im trying to develop a function based on FragmentLengthNormalization, but when i try to execute my new function it gives me the next error message: Error in process.NormalRegions(normalReg, verbose =