Re: [aroma.affymetrix] unusual copy number analysis result - split copy numbers

2010-09-28 Thread Henrik Bengtsson
Hi. On Tue, Sep 28, 2010 at 11:54 AM, Patrick Danaher patrickjdana...@gmail.com wrote: Hi Henrik, Thanks for your response.  The thread you suggested ( http://goo.gl/FGVe ) describes my problem well - I'm getting a very similar intensity profile for some chromosomes in some samples.  The

Re: [aroma.affymetrix] unusual copy number analysis result - split copy numbers

2010-09-28 Thread Henrik Bengtsson
On Tue, Sep 28, 2010 at 12:03 PM, hb h...@biostat.ucsf.edu wrote: Hi. On Tue, Sep 28, 2010 at 11:54 AM, Patrick Danaher patrickjdana...@gmail.com wrote: Hi Henrik, Thanks for your response.  The thread you suggested ( http://goo.gl/FGVe ) describes my problem well - I'm getting a very

Re: [aroma.affymetrix] unusual copy number analysis result - split copy numbers

2010-09-26 Thread Henrik Bengtsson
Hi. On Mon, Sep 13, 2010 at 4:19 PM, Patrick patrickjdana...@gmail.com wrote: Hi everyone, I'm using AROMA's implementation of the CRMA v2 method to get copy number estimates for cancer samples, and I'm getting a very unusual result.  Many of the samples have a chromosome where AROMA has

[aroma.affymetrix] unusual copy number analysis result - split copy numbers

2010-09-13 Thread Patrick
Hi everyone, I'm using AROMA's implementation of the CRMA v2 method to get copy number estimates for cancer samples, and I'm getting a very unusual result. Many of the samples have a chromosome where AROMA has called primarily copy number gains or losses, and the losses are mixed in with each