Hi.
On Tue, Aug 6, 2013 at 12:31 PM, ying chen njs...@gmail.com wrote:
Hi Henrik,
Sorry I have one more question to bug you. The urls in the df (by df -
readDataFrame(db);) point to UCSCgenome browser with NCBI36/hg18 assembly. I
looked at the
Hi Henrik,
I tried method I mentioned above. But I got an error message when running
fit(sm, verbose=-10).
Array #1 ('321T') of 291 on chromosome 1...
Error in UseMethod(getChecksum) :
no applicable method for 'getChecksum' applied to an object of class
list
What did I do wrong?
Thanks
Sorry, one more question regarding CBS. During
fit(sm, verbose=-10)
Building tuple of reference sets...
Type of reference: median
No reference available.
Calculating average copy-number signals...
Retrieving average unit signals across 291 arrays...
..
On Thu, Aug 1, 2013 at 10:53 AM,
On Mon, Jul 29, 2013 at 7:45 PM, ying chen njs...@gmail.com wrote:
Hi Henrik,
Thanks a lot for the help!
Sorry I have more questions. I am following How to: Calculate total copy
number ratios from total (non-polymorphic) signals and Vignette: Total
copy-number segmentation (non-paired CBS),
Hi Henrik,
Thanks a lot for the help!
Sorry I have more questions. I am following How to: Calculate total copy
number ratios from total (non-polymorphic) signals and Vignette: Total
copy-number segmentation (non-paired CBS), but I am not sure if I do it
correctly.
I have two SNP6 datasets Tumor
Hi.
On Fri, Jul 26, 2013 at 8:02 AM, sean nj njs...@gmail.com wrote:
Hi guys,
I have a question regarding how to calculate raw copy numbers using common
reference instead of average of all samples of the study. Basically I want
to use average of HapMap270 samples as reference for all further
