Re: Exporting summarized signals to be used by Affymetrix GTC? (Was: Re: [aroma.affymetrix] Re: CRMA v2 errors)

2010-07-18 Thread Henrik Bengtsson
Hi Markus, sorry but this one slipped through my net. On Thu, Jun 17, 2010 at 5:27 PM, Smaug72 leber.mar...@gmx.de wrote: Dear Henrik, unfortunately we are faced with another problem. We processed several CEL files with CRMAv2 as decribed by vignette:

Re: [aroma.affymetrix] Re: CRMA v2 errors

2010-05-14 Thread Markus Leber
Dear Henrik, thank you very much for your support. You are right. I am sorry that I didn't notice this problem. Step Calibration for crosstalk between allele probe pairs works without problems now. Unfortunately at the beginning of step Normalization for nucleotide-position probe sequence

Re: [aroma.affymetrix] Re: CRMA v2 errors

2010-05-14 Thread Henrik Bengtsson
Hi. On Fri, May 14, 2010 at 10:36 AM, Markus Leber leber.mar...@gmx.de wrote: Dear Henrik, thank you very much for your support. You are right. I am sorry that I didn't notice this problem. Step Calibration for crosstalk between allele probe pairs works without problems now.

Re: [aroma.affymetrix] Re: CRMA v2 errors

2010-05-12 Thread Henrik Bengtsson
Hi. On Wed, May 12, 2010 at 12:23 PM, Smaug72 leber.mar...@gmx.de wrote: Dear Henrik, thank you very much for your reply. Again I installed R and CRMA v2 on a new virtual machine (Suse 11.2), so that I can step back if necessary. To get the terms correct; you installed the aroma.affymetrix