Hi,
I stored my CDF file in annotationData/chipTypes; nevertheless I cannot upload
the file.
Can anyone please tel me what I am doing wrong:
cdf-AffymetrixCdfFile$byChipType(MoEx-1_0-st-v1.cdf)
ror in list(`AffymetrixCdfFile$byChipType(MoEx-1_0-st-v1.cdf)` =
environment, :
[2010-03-09
Hi Daniela.
Is your CDF in the:
annotationData/chipTypes/MoEx-1_0-st-v1/
directory?
(http://aroma-project.org/node/66)
Cheers,
Mark
Hi,
I stored my CDF file in annotationData/chipTypes; nevertheless I cannot
upload the file.
Can anyone please tel me what I am doing wrong:
For Gene ST arrays it appears that pdInfoBuilder will not work if a
transFile argument is specified. Secondly, in the example above
probeFile = HuGene-1_0-st-v1.probe.tab is incorrect - it should be
the *.probeset.csv file from Affy. And finally, it also requires that
the MPS (Meta Probeset File)
Hi Mark,
Thanks for your answer. I think it works now; I had the working
directory set at chipTypes and not at the parent directory of
annotationData.
I am getting following back:
cdf-AffymetrixCdfFile$findByChipType(MoEx-1_0-st-v1)
cdf
[1]
Hi.
On Tue, Mar 9, 2010 at 11:01 PM, dkny169 daniela...@yahoo.com wrote:
Hi Henrik,
I got my documentation from here:
http://bioinf.wehi.edu.au/folders/firmagene/sup3.R
Thanks. That is from the FIRMAGene supplementary materials:
http://bioinf.wehi.edu.au/folders/firmagene/
Mark
