Hello everyone,
I am quite new to aroma.affymetrix, but so far, I was successfully using it
and i really like it.
I did my first 190 SNP6 CNV arrays with the annotation files for hg19,
using CB segmentation. But the UCSC links in the .xls file generated by CBS
and in the regions.xls file
I think you need to have up to date files listed here:
http://aroma-project.org/chipTypes/GenomeWideSNP_6
... including the up to date cdf file
Best,
Marcin
On Mon, May 7, 2012 at 1:34 PM, Sebastian Burgstaller
sebastian.burgstal...@gmail.com wrote:
Hello everyone,
I am quite new to
Hi guys,
I tried to convert recent customCDF HTHGU133A_Hs_ENTREZG.cdf (version
15.10) to binary format and end up with error message:
Error in convertCdf(HTHGU133A_Hs_ENTREZG.cdf,
HTHGU133A_Hs_ENTREZG,Binary.cdf, :
An inconsistency between source and destination CDF was detected.
Hi Henrik,
On this page http://aroma-project.org/vignettes/PairedPSCBS-lowlevel you
showed how to make whole genome plots of TCN, the
decrease-of-heterozygosity (DH), and the minor-major CN estimates. Is there
a way to make such plots for individual chromosomes?
Thanks,
Michelle
On Fri, Feb
