[aroma.affymetrix] relaxing memory usage

2012-09-19 Thread S. A. Haider
Hi Guys, Following preprocessing (doCRMAv2), i am running segmentation using CBS. I have few hundreds of samples (~600 SNP6) and as far as i understand, aroma tries to keep memory usage to minimum. So far, it looks that it will take roughly 2.5 days to run this analysis. Is there a way to run t

Re: [aroma.affymetrix] relaxing memory usage

2012-09-19 Thread Henrik Bengtsson
Hi. On Wed, Sep 19, 2012 at 5:36 AM, S. A. Haider wrote: > Hi Guys, > > Following preprocessing (doCRMAv2), i am running segmentation using CBS. I > have few hundreds of samples (~600 SNP6) and as far as i understand, aroma > tries to keep memory usage to minimum. So far, it looks that it will ta

[aroma.affymetrix] Re: How to apply TumorBoost to Illumina data?

2012-09-19 Thread Unyanee Poolsap
Thank you so much for the very helpful answer. -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are sub