Re: [aroma.affymetrix] Hypersegmentation from Paired total copy-number analysis using CRMAv2 with GWSNP6

Hi, sorry for the delay. The problem with hyper-segmentation is really an issue post CRMAv2 preprocessing. By the broadinstitute copy number pipeline, do you mean http://www.broadinstitute.org/cancer/software/genepattern/modules/snp6copynumberpipeline If so, then they're doing two things

Re: [aroma.affymetrix] Use Existing FIRMA model on new data.

Hi. On Thu, Dec 26, 2013 at 12:47 PM, Sam Danziger sam.danzi...@gmail.com wrote: I'm using FIRMA algorithm, and I would like to use an existing FIRMA model (for instance one trained on 50 arrays) on new data (e.g. 2 new arrays). I am able to train a FIRMA model (and an RMA model) quite easily