Hi All,
I´m encountering a problem with the following code:
library(aroma.affymetrix);
library(ACNE);
log - verbose - Arguments$getVerbose(-8, timestamp=TRUE);
setwd(D:/Users/Who Am I/Documents/0School/Jaar 5/BMCG/Array data/LUMC SNP
250k nsp);
dataSetName - BT;
chipType - Mapping250K_Nsp;
Hi.
The rather confusing error message actually implies that no data files
where found in the data set directory. So:
1. Make sure you have your CEL files in rawData/BT/Mapping250K_Nsp/
2. Does print(list.files(path=getPath(csR)) list your CEL files?
3. See troubleshooting page on 'Setup of
Skip Step 2, because getPath(csR) won't work when the data set is empty.
/Henrik
On Fri, Feb 4, 2011 at 8:00 AM, Henrik Bengtsson
henrik.bengts...@aroma-project.org wrote:
Hi.
The rather confusing error message actually implies that no data files
where found in the data set directory. So:
Shame on me... The .CEL files were in the wrong directory...
A lot of thanks for the quick response!
Sake
On 4 feb, 17:15, Henrik Bengtsson henrik.bengts...@aroma-project.org
wrote:
Skip Step 2, because getPath(csR) won't work when the data set is empty.
/Henrik
On Fri, Feb 4, 2011 at 8:00
Hi All,
I am following the code in the Lab: CRMA v2 on 10K tumor data
document to process 147 SNP6.0 arrays. 39 of these arrays are from
females and the rest are males. I am getting the following error
message at the end of circular binary segmentation step:
Exception: Something is wrong with
