[aroma.affymetrix] Re: Error during Total copy number analysis using CRMA v1

Hi Henrik, Yes that is correct, sorry again for the inconveniences. Jack On Jun 7, 12:12 pm, Henrik Bengtsson h...@stat.berkeley.edu wrote: Hi Jack, from your new message '[aroma.affymetrix] Problem with Total Copy Number Vignette': On Mon, Jun 7, 2010 at 3:36 PM, Jack Yu j.yu

[aroma.affymetrix] Re: Problem with Total Copy Number Vignette

Hi Henrik, I've ran the entirety of the vignette up to the same point (I did forget to run the fit(plm, verbose=verbose) and the same error persists. The reason I'm using version 1 is because all we need is the raw copy number so we didn't need any of the additional tools/calculations.

[aroma.affymetrix] Problem with Total Copy Number Vignette

: process.FragmentLengthNormalization(fln, verbose = verbose) 1: process(fln, verbose = verbose) Thanks in advance, Jack -- Jack Y. Yu Washington University in St.Louis (505) 920-0701 -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output