).
see e.g.
http://www.affymetrix.com/support/technical/technotes/25mer_technote.pdf
Some data preprocessing algorithms such as RMA have versions that only use the
perfect match data. The issues are the same for the MoEx-1_0-st-v1 chip.
Steven McKinney
From
?
(I have a copy of GenomeWideSNP_6.Full.cdf, of size 493291745 bytes dated Apr
13 2007 - is this still valid
or is there a newer version around?)
Best
Steve
Steven McKinney, Ph.D.
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
email
] On Behalf Of Henrik Bengtsson
Sent: December-01-11 12:56 PM
To: aroma-affymetrix@googlegroups.com
Subject: Re: [aroma.affymetrix] GenomeWideSNP_6 annotation file acquisition
issues
Hi.
On Thu, Dec 1, 2011 at 12:40 PM, Steven McKinney smckin...@bccrc.ca
wrote:
Hi all,
I am setting up
This indeed does help get me started.
I have one follow-up question:
How do I nominate you for Sainthood?
Thanks very much for your excellent package
and valuable guidance.
Steven McKinney
-Original Message-
From: aroma-affymetrix@googlegroups.com [mailto:aroma-
affymet
. Before I spend
hours tracking this down I wanted to check with this group and see
if anyone has already done so, and whether machinery is already in place
within aroma.affymetrix to match probesets across chip types and run
analysis appropriately.
Best
Steve
Steven McKinney, Ph.D
.
On Fri, Dec 9, 2011 at 7:02 PM, Steven McKinney smckin...@bccrc.ca wrote:
Dear Henrik
Thanks to your instructions, I have set up and run initial processing on
my
tumour - normal pairs for copy number analysis. However I am as yet
unable to determine how to hand off the processed data
:02:33 2012
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
---
Full Apple crash report
', editor='emacsclient')
require(Cairo)
Loading required package: Cairo
CairoPNG(foo.png, width=840, height=640); plot(1:10); dev.off();
null device
1
Steven McKinney
From: Steven McKinney
Sent: January 17, 2012 8:59 PM
To: aroma-affymetrix
)?
Should I submit any kind of problem report to the grDevices
maintainers?
Steve
/Henrik
/Henrik
On Tue, Jan 17, 2012 at 9:09 PM, Steven McKinney smckin...@bccrc.ca
wrote:
Hi Henrik
If I just load the Cairo library and do a PNG plot, the plot appears
in the png file alright (8 kb
'rm(biocLite)' and try again.
In addition: Warning message:
In packageDescription(pkg) : no package 'affxparser' was found
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
From: aroma-affymetrix@googlegroups.com
[mailto:aroma
the install.
Henrik may have clarifying comments.
Steven McKinney
From: aroma-affymetrix@googlegroups.com [aroma-affymetrix@googlegroups.com] On
Behalf Of Kai [wangz...@gmail.com]
Sent: February 2, 2012 11:04 PM
To: aroma-affymetrix@googlegroups.com
processing of data obtained from different
Affy chip types?
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report
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