Re: [aroma.affymetrix] Problem with read CDF files

2010-09-28 Thread Pierre Neuvial
Hi Wero, Dario is right, as explained in http://aroma-project.org/node/66. Also, I would recommend not to manually add data in the installation directories of R packages. When you upgrade to a new version of R, your data will still be stuck in the installation directory of the old version.

Re: [aroma.affymetrix] unusual copy number analysis result - split copy numbers

2010-09-28 Thread Henrik Bengtsson
Hi. On Tue, Sep 28, 2010 at 11:54 AM, Patrick Danaher patrickjdana...@gmail.com wrote: Hi Henrik, Thanks for your response.  The thread you suggested ( http://goo.gl/FGVe ) describes my problem well - I'm getting a very similar intensity profile for some chromosomes in some samples.  The

Re: [aroma.affymetrix] unusual copy number analysis result - split copy numbers

2010-09-28 Thread Henrik Bengtsson
On Tue, Sep 28, 2010 at 12:03 PM, hb h...@biostat.ucsf.edu wrote: Hi. On Tue, Sep 28, 2010 at 11:54 AM, Patrick Danaher patrickjdana...@gmail.com wrote: Hi Henrik, Thanks for your response.  The thread you suggested ( http://goo.gl/FGVe ) describes my problem well - I'm getting a very