Re: [aroma.affymetrix] extract LRR and BAF from ACNE results

2015-06-01 Thread hongen xu
Dear Henrik, many thanks for your detailed explanation. 在 2015年5月29日星期五 UTC+2下午9:20:34,Henrik Bengtsson写道: > > So, there are few things here: > > 1. In the Aroma Framework, we always try to store estimates/signals on > the "original" scale, e.g. even if, say, chip-effect estimates are > orig

Re: [aroma.affymetrix] cfit error while doCRMAv2

2015-06-01 Thread Arshi Arora
I was able to get the plot. But I reinstalled sfit anyways and it works now! Thanks so much Henrik. I get a lot of these warnings after running - any advice ? Argument 'centers' for matrixStats::rowMads() has been renamed to 'center'. Please update code accordingly. I also get this warning at

Re: [aroma.affymetrix] cfit error while doCRMAv2

2015-06-01 Thread Henrik Bengtsson
On Mon, Jun 1, 2015 at 9:17 AM, Arshi Arora wrote: > I was able to get the plot. But I reinstalled sfit anyways and it works now! > Thanks so much Henrik. Great to hear. > I get a lot of these warnings after running - any advice ? > > Argument 'centers' for matrixStats::rowMads() has been renam