Hello,
I have a few hundred paired samples that I'd like to run through Paired
PSCBS. The example
at http://www.aroma-project.org/vignettes/PairedPSCBS-lowlevel/ is very
clear on how to set up this protocol for one pair of samples. In order to
do a test run, I used a for loop to run Paired PSCBS on each pair one at a
time.
Is there another way to do this?
For example, I have two vectors with file names
TumorSamples <- c("Sample1_T.CEL", "Sample2_T.CEL", "Sample3_T.CEL")
NormalSamples <- c("Sample1_N.CEL", "Sample2_N.CEL", "Sample3_N.CEL")
instead of pair <- c(T="GSM318736", N="GSM318737")
within a for loop, I ran TumorNormalpair <- c(T=dsT[i], N=dsN[i])
Thanks,
Gaius
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