Dear Sir or Madam,
I would like to analyse Affymetrix Mouse Diversity Array, extract BAF LRR
using CRMA v2
I followed CRMA v2 vignette, and I get always an error during process() :
---
20140319 18:52:29| Reading probe intensities from 17 arrays...done
20140319 18:52:29| Fitting probe-level model...
20140319 18:52:29| Calling fitUnit() via lapply()
Erreur dans if (sampleAA * sampleBB > 0L) { :
l'argument est de longueur nulle
Calls: fit ... fit.ProbeLevelModel -> <Anonymous> -> FUN -> nmfFcn ->
robustWInit
De plus : Il y a eu 45 avis (utilisez warnings() pour les visionner)
20140319 18:55:34| Fitting probe-level model...done
20140319 18:55:34| Fitting chunk #1 of 6 of 'genotyping' units (code=2)
with 4 groups/2+2+2+2 cells...done
20140319 18:55:34| Unit dimension #1 (4 groups/2+2+2+2 cells) of 4...done
20140319 18:55:34| Fitting the model by unit dimensions (at least for the
large classes)...done
20140319 18:55:34| Unit type #2 ('genotyping') of 2...done
20140319 18:55:34| Fitting NmfSnpPlm for each unit type separately...done
20140319 18:55:34|Fitting model of class NmfSnpPlm...done
Exécution arrêtée
----
All packages are updated with the latest releases.
here is sessionInfo()
http://eric.voirin.free.fr/aroma/sessionInfo.Rout
here is the script
http://eric.voirin.free.fr/aroma/script_aroma.R
here is the logfile
http://eric.voirin.free.fr/aroma/script_aroma.Rout
Easy to reprodruce.
Thanks in advance for your time and ideas...
Eric
--
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
---
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to aroma-affymetrix+unsubscr...@googlegroups.com.
For more options, visit https://groups.google.com/d/optout.
