Re:Re: [aroma.affymetrix] Error: cannot allocate vector of size 618.0 Mb

2012-11-27 Thread zhouzaiwei
it, try adding the following at the top of your script. setRam(aromaSettings, 0.5); Did this solve it? /Henrik On Mon, Nov 26, 2012 at 7:36 PM, zhouzaiwei [hidden email] wrote: Hello, I am currently trying to analyze data from affymetrix human promoter tiling 1.0 array by MAT

Re:Re: Re: [aroma.affymetrix] Error: cannot allocate vector of size 618.0 Mb

2012-11-27 Thread zhouzaiwei
:58 PM, zhouzaiwei [hidden email] wrote: Hi, by this code setRam(aromaSettings, 0.5); , I could proceed to next code although there is still some errorcannot allocate vector of size 304.0 Mb and warnings what do you mean retry in a fresh R session?should I store this project to hard disc,turn off

[aroma.affymetrix] error on FIRMAGene

2012-12-07 Thread zhouzaiwei
Hi, everyone, I want to use FIRMAGene to analysis differencial splicing of hugene-1.0-st array ,there is no overlap between Ensembl identifiers from getUnitNames() and Affymetrix identifiers in 'hgnetaffx'.follows my code: library(aroma.affymetrix) library(FIRMAGene) hgnetaffx -

[aroma.affymetrix] which version cdf should used when apply FIRMAGene

2012-12-15 Thread zhouzaiwei
Hi , I want to apply FIRMAGene to analysis differential splicing events of hugene_1.0_st array and have red article (Robinson Speed, 2007) and script(http://bioinf.wehi.edu.au/folders/firmagene/sup3_04feb2010.R),I want to know which version of cdf file should be used?HuGene-1_0-st-v1,r3.cdf or

Re:RE: [aroma.affymetrix] how to get differential region after MatSmoothing?

2013-08-14 Thread zhouzaiwei
at http://www.bioconductor.org/packages/release/bioc/html/Repitools.html From: [hidden email] [[hidden email]] on behalf of zhouzaiwei [[hidden email]] Sent: Wednesday, 14 August 2013 19:38 To: [hidden email] Subject: [aroma.affymetrix] how to get differential