Re: [aroma.affymetrix] Germline CNV removal - seperate segmentation for normal & tumour??

2013-10-07 Thread Henrik Bengtsson
Hi. On Mon, Oct 7, 2013 at 4:57 AM, wrote: > > Dear aroma members, > > I wish to get your kind opinion regarding an issue. After running CRMAv2 and > performing segmentation (CBS), I would like to run GISTIC analysis. As I > understand I can run GISTIC from the segmented output. However, readi

[aroma.affymetrix] Germline CNV removal - seperate segmentation for normal & tumour??

2013-10-07 Thread helping432
Dear aroma members, I wish to get your kind opinion regarding an issue. After running CRMAv2 and performing segmentation (CBS), I would like to run GISTIC analysis. As I understand I can run GISTIC from the segmented output. However, reading the GISTIC manual, I found I am required to remove