Re: [aroma.affymetrix] sfit

2015-02-04 Thread Juanjo Lozano
Henrik thanks a lot

you are right

source('http://callr.org/install#sfit')  

solve the problem

Best




El miércoles, 21 de enero de 2015, 21:40:23 (UTC+1), Henrik Bengtsson 
escribió:

 It seems as you don't have the 'sfit' package installed.  Not sure how 
 you installed aroma.affymetrix in the first place (the recommended way 
 is shown at http://aroma-project.org/install/), but try: 

 source('http://callr.org/install#sfit') 

 That should install 'sfit'.  If the installation of 'sfit' fails/gives 
 an error, please report the error along with your version of R and 
 operating system. 

 /Henrik 

 On Wed, Jan 21, 2015 at 5:46 AM, Juanjo Lozano 
 juanjolo...@gmail.com javascript: wrote: 
  Hi, 
  
  I found 
  
  Error: Package not loaded: sfit 
  Execution halted 
  
  in 
  
  R version 3.1.2 (2014-10-31) -- Pumpkin Helmet 
  
  Could you help-me? 
  
  Best 
  
  Juanjo 
  
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Re: [aroma.affymetrix] sfit

2015-01-21 Thread Henrik Bengtsson
It seems as you don't have the 'sfit' package installed.  Not sure how
you installed aroma.affymetrix in the first place (the recommended way
is shown at http://aroma-project.org/install/), but try:

source('http://callr.org/install#sfit')

That should install 'sfit'.  If the installation of 'sfit' fails/gives
an error, please report the error along with your version of R and
operating system.

/Henrik

On Wed, Jan 21, 2015 at 5:46 AM, Juanjo Lozano
juanjolozanos...@gmail.com wrote:
 Hi,

 I found

 Error: Package not loaded: sfit
 Execution halted

 in

 R version 3.1.2 (2014-10-31) -- Pumpkin Helmet

 Could you help-me?

 Best

 Juanjo

 --
 --
 When reporting problems on aroma.affymetrix, make sure 1) to run the latest
 version of the package, 2) to report the output of sessionInfo() and
 traceback(), and 3) to post a complete code example.


 You received this message because you are subscribed to the Google Groups
 aroma.affymetrix group with website http://www.aroma-project.org/.
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version of the package, 2) to report the output of sessionInfo() and 
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[aroma.affymetrix] sfit

2015-01-21 Thread Juanjo Lozano
Hi,

I found

Error: Package not loaded: sfit
Execution halted

in 

R version 3.1.2 (2014-10-31) -- Pumpkin Helmet

Could you help-me?

Best

Juanjo

-- 
-- 
When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


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Re: [aroma.affymetrix] sfit fails

2011-05-15 Thread Henrik Bengtsson
Hi.

First, have you tried to install the aroma framework using the following?

source(http://www.aroma-project.org/hbLite.R;);
hbInstall(aroma.affymetrix);

That should also install 'sfit' (from another server than R-forge).
Pay attention to the output when installing 'sfit' - if there's an
error, please let me know.

Second, R-forge does not provide binary builds of all packages,
specifically for 'sfit' (don't ask me why). This is probably why you
have problems installing directly from R-forge.

/Henrik

On Thu, May 12, 2011 at 8:06 PM, jasmine pfk...@gmail.com wrote:
 Hi,

 I encountered error in AllelicCrosstalkCalibration, where it says that
 sfit not found. I manually tried to install sfit but this is the error
 that I get. I am using R-2.12.2

 install.packages(sfit,
 repos=http://R-Forge.R-project.org,lib=~/R/library64;)
 trying URL 'http://R-Forge.R-project.org/src/contrib/
 sfit_0.1.9.tar.gz'
 Content type 'application/x-gzip' length 61695 bytes (60 Kb)
 opened URL
 ==
 downloaded 60 Kb

 * installing *source* package â ...
 ** libs
 ** arch -
 gcc -std=gnu99 -I/home/user/R/R-2.12.2/include  -I/usr/local/include
 -Wall -O3 -fpic  -g -O2 -c cfit.c -o cfit.o
 gcc -std=gnu99 -I/home/user/R/R-2.12.2/include  -I/usr/local/include
 -Wall -O3 -fpic  -g -O2 -c spa.c -o spa.o
 gcc -std=gnu99 -g -O2 -Wall -O3 cli.c cfit.o spa.o -o cfit -lm
 cli.c: In function â:
 cli.c:88: warning: â may be used uninitialized in this function
 cp cfit dummy.so
 mv cfit ../inst/bin/
 mv: cannot move `cfit' to `../inst/bin/': Not a directory
 make: *** [all] Error 1
 ERROR: compilation failed for package â
 * removing â

 The downloaded packages are in
        â
 Warning message:
 In install.packages(sfit, repos = http://R-Forge.R-project.org;,  :
  installation of package 'sfit' had non-zero exit status

 Thanks.

 --
 When reporting problems on aroma.affymetrix, make sure 1) to run the latest
 version of the package, 2) to report the output of sessionInfo() and
 traceback(), and 3) to post a complete code example.


 You received this message because you are subscribed to the Google Groups
 aroma.affymetrix group with website http://www.aroma-project.org/.
 To post to this group, send email to aroma-affymetrix@googlegroups.com
 To unsubscribe and other options, go to http://www.aroma-project.org/forum/


-- 
When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


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[aroma.affymetrix] sfit fails

2011-05-12 Thread jasmine
Hi,

I encountered error in AllelicCrosstalkCalibration, where it says that
sfit not found. I manually tried to install sfit but this is the error
that I get. I am using R-2.12.2

 install.packages(sfit, 
 repos=http://R-Forge.R-project.org,lib=~/R/library64;)
trying URL 'http://R-Forge.R-project.org/src/contrib/
sfit_0.1.9.tar.gz'
Content type 'application/x-gzip' length 61695 bytes (60 Kb)
opened URL
==
downloaded 60 Kb

* installing *source* package â ...
** libs
** arch -
gcc -std=gnu99 -I/home/user/R/R-2.12.2/include  -I/usr/local/include
-Wall -O3 -fpic  -g -O2 -c cfit.c -o cfit.o
gcc -std=gnu99 -I/home/user/R/R-2.12.2/include  -I/usr/local/include
-Wall -O3 -fpic  -g -O2 -c spa.c -o spa.o
gcc -std=gnu99 -g -O2 -Wall -O3 cli.c cfit.o spa.o -o cfit -lm
cli.c: In function â:
cli.c:88: warning: â may be used uninitialized in this function
cp cfit dummy.so
mv cfit ../inst/bin/
mv: cannot move `cfit' to `../inst/bin/': Not a directory
make: *** [all] Error 1
ERROR: compilation failed for package â
* removing â

The downloaded packages are in
â
Warning message:
In install.packages(sfit, repos = http://R-Forge.R-project.org;,  :
  installation of package 'sfit' had non-zero exit status

Thanks.

-- 
When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


You received this message because you are subscribed to the Google Groups 
aroma.affymetrix group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/