Re: [aroma.affymetrix] sfit
Henrik thanks a lot you are right source('http://callr.org/install#sfit') solve the problem Best El miércoles, 21 de enero de 2015, 21:40:23 (UTC+1), Henrik Bengtsson escribió: It seems as you don't have the 'sfit' package installed. Not sure how you installed aroma.affymetrix in the first place (the recommended way is shown at http://aroma-project.org/install/), but try: source('http://callr.org/install#sfit') That should install 'sfit'. If the installation of 'sfit' fails/gives an error, please report the error along with your version of R and operating system. /Henrik On Wed, Jan 21, 2015 at 5:46 AM, Juanjo Lozano juanjolo...@gmail.com javascript: wrote: Hi, I found Error: Package not loaded: sfit Execution halted in R version 3.1.2 (2014-10-31) -- Pumpkin Helmet Could you help-me? Best Juanjo -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups aroma.affymetrix group with website http://www.aroma-project.org/. To post to this group, send email to aroma-af...@googlegroups.com javascript: To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups aroma.affymetrix group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetr...@googlegroups.com javascript:. For more options, visit https://groups.google.com/d/optout. -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups aroma.affymetrix group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups aroma.affymetrix group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
Re: [aroma.affymetrix] sfit
It seems as you don't have the 'sfit' package installed. Not sure how you installed aroma.affymetrix in the first place (the recommended way is shown at http://aroma-project.org/install/), but try: source('http://callr.org/install#sfit') That should install 'sfit'. If the installation of 'sfit' fails/gives an error, please report the error along with your version of R and operating system. /Henrik On Wed, Jan 21, 2015 at 5:46 AM, Juanjo Lozano juanjolozanos...@gmail.com wrote: Hi, I found Error: Package not loaded: sfit Execution halted in R version 3.1.2 (2014-10-31) -- Pumpkin Helmet Could you help-me? Best Juanjo -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups aroma.affymetrix group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups aroma.affymetrix group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout. -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups aroma.affymetrix group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups aroma.affymetrix group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
[aroma.affymetrix] sfit
Hi, I found Error: Package not loaded: sfit Execution halted in R version 3.1.2 (2014-10-31) -- Pumpkin Helmet Could you help-me? Best Juanjo -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups aroma.affymetrix group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups aroma.affymetrix group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
Re: [aroma.affymetrix] sfit fails
Hi. First, have you tried to install the aroma framework using the following? source(http://www.aroma-project.org/hbLite.R;); hbInstall(aroma.affymetrix); That should also install 'sfit' (from another server than R-forge). Pay attention to the output when installing 'sfit' - if there's an error, please let me know. Second, R-forge does not provide binary builds of all packages, specifically for 'sfit' (don't ask me why). This is probably why you have problems installing directly from R-forge. /Henrik On Thu, May 12, 2011 at 8:06 PM, jasmine pfk...@gmail.com wrote: Hi, I encountered error in AllelicCrosstalkCalibration, where it says that sfit not found. I manually tried to install sfit but this is the error that I get. I am using R-2.12.2 install.packages(sfit, repos=http://R-Forge.R-project.org,lib=~/R/library64;) trying URL 'http://R-Forge.R-project.org/src/contrib/ sfit_0.1.9.tar.gz' Content type 'application/x-gzip' length 61695 bytes (60 Kb) opened URL == downloaded 60 Kb * installing *source* package â ... ** libs ** arch - gcc -std=gnu99 -I/home/user/R/R-2.12.2/include -I/usr/local/include -Wall -O3 -fpic -g -O2 -c cfit.c -o cfit.o gcc -std=gnu99 -I/home/user/R/R-2.12.2/include -I/usr/local/include -Wall -O3 -fpic -g -O2 -c spa.c -o spa.o gcc -std=gnu99 -g -O2 -Wall -O3 cli.c cfit.o spa.o -o cfit -lm cli.c: In function â: cli.c:88: warning: â may be used uninitialized in this function cp cfit dummy.so mv cfit ../inst/bin/ mv: cannot move `cfit' to `../inst/bin/': Not a directory make: *** [all] Error 1 ERROR: compilation failed for package â * removing â The downloaded packages are in â Warning message: In install.packages(sfit, repos = http://R-Forge.R-project.org;, : installation of package 'sfit' had non-zero exit status Thanks. -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups aroma.affymetrix group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups aroma.affymetrix group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
[aroma.affymetrix] sfit fails
Hi, I encountered error in AllelicCrosstalkCalibration, where it says that sfit not found. I manually tried to install sfit but this is the error that I get. I am using R-2.12.2 install.packages(sfit, repos=http://R-Forge.R-project.org,lib=~/R/library64;) trying URL 'http://R-Forge.R-project.org/src/contrib/ sfit_0.1.9.tar.gz' Content type 'application/x-gzip' length 61695 bytes (60 Kb) opened URL == downloaded 60 Kb * installing *source* package â ... ** libs ** arch - gcc -std=gnu99 -I/home/user/R/R-2.12.2/include -I/usr/local/include -Wall -O3 -fpic -g -O2 -c cfit.c -o cfit.o gcc -std=gnu99 -I/home/user/R/R-2.12.2/include -I/usr/local/include -Wall -O3 -fpic -g -O2 -c spa.c -o spa.o gcc -std=gnu99 -g -O2 -Wall -O3 cli.c cfit.o spa.o -o cfit -lm cli.c: In function â: cli.c:88: warning: â may be used uninitialized in this function cp cfit dummy.so mv cfit ../inst/bin/ mv: cannot move `cfit' to `../inst/bin/': Not a directory make: *** [all] Error 1 ERROR: compilation failed for package â * removing â The downloaded packages are in â Warning message: In install.packages(sfit, repos = http://R-Forge.R-project.org;, : installation of package 'sfit' had non-zero exit status Thanks. -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups aroma.affymetrix group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/