Re: [aroma.affymetrix] "Cannot fit normalization function to enzyme" error

2014-01-21 Thread Henrik Bengtsson
On Tue, Jan 21, 2014 at 1:01 PM, Pierre Neuvial
 wrote:
> Hi Z.,
>
> If you want people to be able to help you out, then you need to
> explain exactly what you did.  Can you report the output of
> sessionInfo() and traceback(), and post a complete code example ?
>
> Have you checked that your problem is not already solved in the other
> threads titled "Cannot fit normalization function to enzyme" ?
> You can find a few of these threads by googling this error message.

Also, my guess is that different UGP and/or UFL files have been use
then the two different runs, so looking/sharing the details on those
files is useful.

/Henrik

>
> Best,
>
> Pierre
>
> On Tue, Jan 21, 2014 at 7:34 PM, Z. Ding  wrote:
>> Hi,
>>
>> I got this “Cannot fit normalization function to enzyme, because there are
>> no (finite) data points in argument 'y'.” error from doCRMAv2, for 2 SNP6
>> files, out of 150+ samples. A colleague run the same set of SNP6 CEL files
>> which caused this error without any problem, He used the same latest version
>> R as I did, on same/similar servers.
>>
>> Have you seem this error? It would be a great help if you can tell me what
>> might had caused it. Especially, how to resolve it!
>>
>> Thanks!
>>
>> Z.
>>
>>
>> --
>> --
>> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
>> version of the package, 2) to report the output of sessionInfo() and
>> traceback(), and 3) to post a complete code example.
>>
>>
>> You received this message because you are subscribed to the Google Groups
>> "aroma.affymetrix" group with website http://www.aroma-project.org/.
>> To post to this group, send email to aroma-affymetrix@googlegroups.com
>> To unsubscribe and other options, go to http://www.aroma-project.org/forum/
>>
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>
> --
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
> version of the package, 2) to report the output of sessionInfo() and 
> traceback(), and 3) to post a complete code example.
>
>
> You received this message because you are subscribed to the Google Groups 
> "aroma.affymetrix" group with website http://www.aroma-project.org/.
> To post to this group, send email to aroma-affymetrix@googlegroups.com
> To unsubscribe and other options, go to http://www.aroma-project.org/forum/
>
> ---
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-- 
-- 
When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


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Re: [aroma.affymetrix] "Cannot fit normalization function to enzyme" error

2014-01-21 Thread Pierre Neuvial
Hi Z.,

If you want people to be able to help you out, then you need to
explain exactly what you did.  Can you report the output of
sessionInfo() and traceback(), and post a complete code example ?

Have you checked that your problem is not already solved in the other
threads titled "Cannot fit normalization function to enzyme" ?
You can find a few of these threads by googling this error message.

Best,

Pierre

On Tue, Jan 21, 2014 at 7:34 PM, Z. Ding  wrote:
> Hi,
>
> I got this “Cannot fit normalization function to enzyme, because there are
> no (finite) data points in argument 'y'.” error from doCRMAv2, for 2 SNP6
> files, out of 150+ samples. A colleague run the same set of SNP6 CEL files
> which caused this error without any problem, He used the same latest version
> R as I did, on same/similar servers.
>
> Have you seem this error? It would be a great help if you can tell me what
> might had caused it. Especially, how to resolve it!
>
> Thanks!
>
> Z.
>
>
> --
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
> You received this message because you are subscribed to the Google Groups
> "aroma.affymetrix" group with website http://www.aroma-project.org/.
> To post to this group, send email to aroma-affymetrix@googlegroups.com
> To unsubscribe and other options, go to http://www.aroma-project.org/forum/
>
> ---
> You received this message because you are subscribed to the Google Groups
> "aroma.affymetrix" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to aroma-affymetrix+unsubscr...@googlegroups.com.
> For more options, visit https://groups.google.com/groups/opt_out.

-- 
-- 
When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


You received this message because you are subscribed to the Google Groups 
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/

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