Hi.
On Mon, Sep 27, 2010 at 4:51 PM, Kai <wangz...@gmail.com> wrote:
> Hi Henrik,
>
> I was wondering whether there is a way I can fine tune the behavior of
> CbsModel. Sometimes the default algorithm produces too many small
> fragments right next to each other without much separation in mean
> copy numbers. Is there a way to control how "smooth" the segmentation
> results are?
Any additional arguments (in "...") that you pass to process(cbs, ...)
will be passed down to the DNAcopy::segment(), which is the function
doing the actual segmentation. For more details on how fine tuning
the CBS algorithm, see help("segment", package="DNAcopy"). You may
also want to contact the authors of that method/package.
/Henrik
>
> Thanks a lot!
>
> Best,
> Kai
>
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When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
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