Re: [aroma.affymetrix] Error: could not find function "process"
Hi,
first, make sure to understand the difference between 'chip type' and 'CDF';
http://aroma-project.org/definitions/namesAndTags
and how the aroma framework uses comma-separated tags in filenames.
See also http://aroma-project.org/vignettes/CRMAv2, which clearly
illustrates this.
/Henrik
On Sun, Mar 24, 2013 at 4:14 AM, Uma Shankavaram
wrote:
> Hi Henrik,
>
> Can you help why I getting this error at copy number segmentation step ?
>
> ce <- ChromosomeExplorer(cbs, zooms=2^(0:5))
> process(ce, array=1:2, chromosomes=c(1,2,7,22), verbose=verbose)
> Error: Failed to located UGP files for one of the chip types
> (GenomeWideSNP_6.Full).
>
> By checking the information of ugp file, seems like the file is seen ok.
>> ugp <- UgpGenomeInformation$byChipType("GenomeWideSNP_6.Full")
>> print(ugp)
> UgpGenomeInformation:
> Name: GenomeWideSNP_6.Full
> Tags: na31,hg19,HB20110328
> Full name: GenomeWideSNP_6.Full,na31,hg19,HB20110328
> Pathname:
> annotationData/chipTypes/GenomeWideSNP_6.Full/GenomeWideSNP_6.Full,na31,hg19,HB20110328.ugp
> File size: 8.97 MB (9407867 bytes)
> RAM: 0.00 MB
> Chip type: GenomeWideSNP_6,Full
>
> Thanks in advance
> Uma
>
> On Sat, Mar 23, 2013 at 5:52 PM, Uma Shankavaram
> wrote:
>>
>> Sorry, I guess I overlooked it. Many thanks for the help.
>>
>> Uma
>>
>>
>> On Sat, Mar 23, 2013 at 5:45 PM, Henrik Bengtsson
>> wrote:
>>>
>>> On Sat, Mar 23, 2013 at 2:41 PM, Uma Shankavaram
>>> wrote:
>>> > Yes, I found it at the aroma.affymetrix.org site under labs.
>>> >
>>> >
>>> > https://docs.google.com/document/d/1P8zyjvzpKvW1Zquys3DHCXCkzaENqILrOz99uTWxppk/edit
>>>
>>> Thanks. Though, at bit before that it says/said:
>>>
>>> log <- verbose <- Arguments$getVerbose(-8, timestamp=TRUE)
>>>
>>> I've changed 'log' to 'verbose', because that will always work.
>>>
>>> /H
>>>
>>> >
>>> > Thx
>>> >
>>> > Uma
>>> >
>>> >
>>> > On Sat, Mar 23, 2013 at 5:32 PM, Henrik Bengtsson
>>> > wrote:
>>> >>
>>> >> On Sat, Mar 23, 2013 at 2:29 PM, Uma Shankavaram
>>> >> wrote:
>>> >> > Dear Henrik,
>>> >> >
>>> >> > Thanks for the prompt fix. I have re-installed the library from the
>>> >> > source("http://aroma-project.org/hbLite.R";)
>>> >> > hbInstall("aroma.core")
>>> >> >
>>> >> > Yes, it is working now, but there is still a small glitch.
>>> >> > It is failing if I pass the verbose argument.
>>> >> >
>>> >> > e.g.
>>> >> > process(ae, verbose = log)
>>> >> >
>>> >> > gives an error:
>>> >> > at #01. process(ae, verbose = log)
>>> >> > - process() is in environment 'aroma.core'
>>> >> >
>>> >> > Error: Argument 'verbose' is not a vector: function
>>> >>
>>> >> So, here 'log' probably equals base::log. Use verbose=TRUE (default)
>>> >> or a (negative) value, e.g. verbose=-10 (verbose=-20 shows more).
>>> >>
>>> >> Is there an (online?) example showing "process(ae, verbose = log)"
>>> >> that needs to be corrected?
>>> >>
>>> >> /Henrik
>>> >>
>>> >>
>>> >> >>
>>> >> > However, without verbose argument, gets the result.
>>> >> > process(ae)
>>> >> > Color maps: sqrt,yellow
>>> >> > Chip type: GenomeWideSNP_6.Full
>>> >> > Samples: GSM557940, GSM557941, GSM557942
>>> >> > Aliases: GSM557940, GSM557941, GSM557942
>>> >> > Color maps: sqrt,yellow
>>> >> > Chip type: GenomeWideSNP_6.Full
>>> >> > Samples: GSM557940, GSM557941, GSM557942
>>> >> > Aliases: GSM557940, GSM557941, GSM557942
>>> >> > [1] FALSE
>>> >> >
>>> >> >
>>> >> > Uma
>>> >> >
>>> >> > On Sat, Mar 23, 2013 at 5:05 PM, Henrik Bengtsson
>>> >> > wrote:
>>> >> >>
>>> >> >> I've fixed this. Running.
>>> >> >>
>>> >> >> source("http://aroma-project.org/hbLite.R";)
>>> >> >> hbInstall("aroma.core")
>>> >> >>
>>> >> >> should fix this (you'll get aroma.core v2.8.3). Please let me know
>>> >> >> if
>>> >> >> this solved your problem.
>>> >> >>
>>> >> >> /Henrik
>>> >> >>
>>> >> >> PS. The problem appears when installing the R-forge binary of
>>> >> >> aroma.core (which in turn is due to temporary updates in R.rsp,
>>> >> >> which
>>> >> >> [is too much to explain]). I *think* this would only hit people
>>> >> >> who
>>> >> >> have R-forge setup in their getOption("repos") or install directly
>>> >> >> from R-forge, so most people would not be affected by this. I've
>>> >> >> updated hbInstall() to never install from R-forge. FYI, don't
>>> >> >> install
>>> >> >> from R-forge, because that contains my non-official
>>> >> >> under-construction
>>> >> >> and non-tested updates.
>>> >> >>
>>> >> >>
>>> >> >> On Sat, Mar 23, 2013 at 12:24 PM, Henrik Bengtsson
>>> >> >> wrote:
>>> >> >> > I can reproduce this - very odd. I'll investigate a fix it. In
>>> >> >> > the
>>> >> >> > meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
>>> >> >> >
>>> >> >> > install.packages("aroma.core", repos="@CRAN@")
>>> >> >> > install.packages("aroma.affymetrix", repos="@CRAN@")
>>> >> >> >
>>> >> >> > (Add repos="@CRAN@" to make sure not to install from other
>>> >> >> > repositories.)
>>> >> >> >
>>> >> >> > Th
Re: [aroma.affymetrix] Error: could not find function "process"
Hi Henrik,
Can you help why I getting this error at copy number segmentation step ?
ce <- ChromosomeExplorer(cbs, zooms=2^(0:5))
process(ce, array=1:2, chromosomes=c(1,2,7,22), verbose=verbose)
Error: Failed to located UGP files for one of the chip types
(GenomeWideSNP_6.Full).
By checking the information of ugp file, seems like the file is seen ok.
> ugp <- UgpGenomeInformation$byChipType("GenomeWideSNP_6.Full")
> print(ugp)
UgpGenomeInformation:
Name: GenomeWideSNP_6.Full
Tags: na31,hg19,HB20110328
Full name: GenomeWideSNP_6.Full,na31,hg19,HB20110328
Pathname:
annotationData/chipTypes/GenomeWideSNP_6.Full/GenomeWideSNP_6.Full,na31,hg19,HB20110328.ugp
File size: 8.97 MB (9407867 bytes)
RAM: 0.00 MB
Chip type: GenomeWideSNP_6,Full
Thanks in advance
Uma
On Sat, Mar 23, 2013 at 5:52 PM, Uma Shankavaram
wrote:
> Sorry, I guess I overlooked it. Many thanks for the help.
>
> Uma
>
>
> On Sat, Mar 23, 2013 at 5:45 PM, Henrik Bengtsson <
> henrik.bengts...@aroma-project.org> wrote:
>
>> On Sat, Mar 23, 2013 at 2:41 PM, Uma Shankavaram
>> wrote:
>> > Yes, I found it at the aroma.affymetrix.org site under labs.
>> >
>> >
>> https://docs.google.com/document/d/1P8zyjvzpKvW1Zquys3DHCXCkzaENqILrOz99uTWxppk/edit
>>
>> Thanks. Though, at bit before that it says/said:
>>
>> log <- verbose <- Arguments$getVerbose(-8, timestamp=TRUE)
>>
>> I've changed 'log' to 'verbose', because that will always work.
>>
>> /H
>>
>> >
>> > Thx
>> >
>> > Uma
>> >
>> >
>> > On Sat, Mar 23, 2013 at 5:32 PM, Henrik Bengtsson
>> > wrote:
>> >>
>> >> On Sat, Mar 23, 2013 at 2:29 PM, Uma Shankavaram
>> >> wrote:
>> >> > Dear Henrik,
>> >> >
>> >> > Thanks for the prompt fix. I have re-installed the library from the
>> >> > source("http://aroma-project.org/hbLite.R";)
>> >> > hbInstall("aroma.core")
>> >> >
>> >> > Yes, it is working now, but there is still a small glitch.
>> >> > It is failing if I pass the verbose argument.
>> >> >
>> >> > e.g.
>> >> > process(ae, verbose = log)
>> >> >
>> >> > gives an error:
>> >> > at #01. process(ae, verbose = log)
>> >> > - process() is in environment 'aroma.core'
>> >> >
>> >> > Error: Argument 'verbose' is not a vector: function
>> >>
>> >> So, here 'log' probably equals base::log. Use verbose=TRUE (default)
>> >> or a (negative) value, e.g. verbose=-10 (verbose=-20 shows more).
>> >>
>> >> Is there an (online?) example showing "process(ae, verbose = log)"
>> >> that needs to be corrected?
>> >>
>> >> /Henrik
>> >>
>> >>
>> >> >>
>> >> > However, without verbose argument, gets the result.
>> >> > process(ae)
>> >> > Color maps: sqrt,yellow
>> >> > Chip type: GenomeWideSNP_6.Full
>> >> > Samples: GSM557940, GSM557941, GSM557942
>> >> > Aliases: GSM557940, GSM557941, GSM557942
>> >> > Color maps: sqrt,yellow
>> >> > Chip type: GenomeWideSNP_6.Full
>> >> > Samples: GSM557940, GSM557941, GSM557942
>> >> > Aliases: GSM557940, GSM557941, GSM557942
>> >> > [1] FALSE
>> >> >
>> >> >
>> >> > Uma
>> >> >
>> >> > On Sat, Mar 23, 2013 at 5:05 PM, Henrik Bengtsson
>> >> > wrote:
>> >> >>
>> >> >> I've fixed this. Running.
>> >> >>
>> >> >> source("http://aroma-project.org/hbLite.R";)
>> >> >> hbInstall("aroma.core")
>> >> >>
>> >> >> should fix this (you'll get aroma.core v2.8.3). Please let me know
>> if
>> >> >> this solved your problem.
>> >> >>
>> >> >> /Henrik
>> >> >>
>> >> >> PS. The problem appears when installing the R-forge binary of
>> >> >> aroma.core (which in turn is due to temporary updates in R.rsp,
>> which
>> >> >> [is too much to explain]). I *think* this would only hit people who
>> >> >> have R-forge setup in their getOption("repos") or install directly
>> >> >> from R-forge, so most people would not be affected by this. I've
>> >> >> updated hbInstall() to never install from R-forge. FYI, don't
>> install
>> >> >> from R-forge, because that contains my non-official
>> under-construction
>> >> >> and non-tested updates.
>> >> >>
>> >> >>
>> >> >> On Sat, Mar 23, 2013 at 12:24 PM, Henrik Bengtsson
>> >> >> wrote:
>> >> >> > I can reproduce this - very odd. I'll investigate a fix it. In
>> the
>> >> >> > meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
>> >> >> >
>> >> >> > install.packages("aroma.core", repos="@CRAN@")
>> >> >> > install.packages("aroma.affymetrix", repos="@CRAN@")
>> >> >> >
>> >> >> > (Add repos="@CRAN@" to make sure not to install from other
>> >> >> > repositories.)
>> >> >> >
>> >> >> > Thanks for the report,
>> >> >> >
>> >> >> > Henrik
>> >> >> >
>> >> >> > On Sat, Mar 23, 2013 at 10:16 AM, Uma Shankavaram
>> >> >> > wrote:
>> >> >> >> Hello,
>> >> >> >>
>> >> >> >> I am using aroma.affymetrix_2.8.2 package using Windows version
>> of R
>> >> >> >> to
>> >> >> >> process 4 SNP6.0 cel files.
>> >> >> >> I am getting an error when trying to use this function.
>> >> >> >>
>> >> >> >> e.g.
>> >> >> >> ae <- ArrayExplorer(csR)
>> >> >> >> setColorMaps(ae, "sqrt,yellow")
>> >> >> >> process(ae, verbose = log)
>> >
Re: [aroma.affymetrix] Error: could not find function "process"
Sorry, I guess I overlooked it. Many thanks for the help.
Uma
On Sat, Mar 23, 2013 at 5:45 PM, Henrik Bengtsson <
henrik.bengts...@aroma-project.org> wrote:
> On Sat, Mar 23, 2013 at 2:41 PM, Uma Shankavaram
> wrote:
> > Yes, I found it at the aroma.affymetrix.org site under labs.
> >
> >
> https://docs.google.com/document/d/1P8zyjvzpKvW1Zquys3DHCXCkzaENqILrOz99uTWxppk/edit
>
> Thanks. Though, at bit before that it says/said:
>
> log <- verbose <- Arguments$getVerbose(-8, timestamp=TRUE)
>
> I've changed 'log' to 'verbose', because that will always work.
>
> /H
>
> >
> > Thx
> >
> > Uma
> >
> >
> > On Sat, Mar 23, 2013 at 5:32 PM, Henrik Bengtsson
> > wrote:
> >>
> >> On Sat, Mar 23, 2013 at 2:29 PM, Uma Shankavaram
> >> wrote:
> >> > Dear Henrik,
> >> >
> >> > Thanks for the prompt fix. I have re-installed the library from the
> >> > source("http://aroma-project.org/hbLite.R";)
> >> > hbInstall("aroma.core")
> >> >
> >> > Yes, it is working now, but there is still a small glitch.
> >> > It is failing if I pass the verbose argument.
> >> >
> >> > e.g.
> >> > process(ae, verbose = log)
> >> >
> >> > gives an error:
> >> > at #01. process(ae, verbose = log)
> >> > - process() is in environment 'aroma.core'
> >> >
> >> > Error: Argument 'verbose' is not a vector: function
> >>
> >> So, here 'log' probably equals base::log. Use verbose=TRUE (default)
> >> or a (negative) value, e.g. verbose=-10 (verbose=-20 shows more).
> >>
> >> Is there an (online?) example showing "process(ae, verbose = log)"
> >> that needs to be corrected?
> >>
> >> /Henrik
> >>
> >>
> >> >>
> >> > However, without verbose argument, gets the result.
> >> > process(ae)
> >> > Color maps: sqrt,yellow
> >> > Chip type: GenomeWideSNP_6.Full
> >> > Samples: GSM557940, GSM557941, GSM557942
> >> > Aliases: GSM557940, GSM557941, GSM557942
> >> > Color maps: sqrt,yellow
> >> > Chip type: GenomeWideSNP_6.Full
> >> > Samples: GSM557940, GSM557941, GSM557942
> >> > Aliases: GSM557940, GSM557941, GSM557942
> >> > [1] FALSE
> >> >
> >> >
> >> > Uma
> >> >
> >> > On Sat, Mar 23, 2013 at 5:05 PM, Henrik Bengtsson
> >> > wrote:
> >> >>
> >> >> I've fixed this. Running.
> >> >>
> >> >> source("http://aroma-project.org/hbLite.R";)
> >> >> hbInstall("aroma.core")
> >> >>
> >> >> should fix this (you'll get aroma.core v2.8.3). Please let me know
> if
> >> >> this solved your problem.
> >> >>
> >> >> /Henrik
> >> >>
> >> >> PS. The problem appears when installing the R-forge binary of
> >> >> aroma.core (which in turn is due to temporary updates in R.rsp, which
> >> >> [is too much to explain]). I *think* this would only hit people who
> >> >> have R-forge setup in their getOption("repos") or install directly
> >> >> from R-forge, so most people would not be affected by this. I've
> >> >> updated hbInstall() to never install from R-forge. FYI, don't
> install
> >> >> from R-forge, because that contains my non-official
> under-construction
> >> >> and non-tested updates.
> >> >>
> >> >>
> >> >> On Sat, Mar 23, 2013 at 12:24 PM, Henrik Bengtsson
> >> >> wrote:
> >> >> > I can reproduce this - very odd. I'll investigate a fix it. In the
> >> >> > meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
> >> >> >
> >> >> > install.packages("aroma.core", repos="@CRAN@")
> >> >> > install.packages("aroma.affymetrix", repos="@CRAN@")
> >> >> >
> >> >> > (Add repos="@CRAN@" to make sure not to install from other
> >> >> > repositories.)
> >> >> >
> >> >> > Thanks for the report,
> >> >> >
> >> >> > Henrik
> >> >> >
> >> >> > On Sat, Mar 23, 2013 at 10:16 AM, Uma Shankavaram
> >> >> > wrote:
> >> >> >> Hello,
> >> >> >>
> >> >> >> I am using aroma.affymetrix_2.8.2 package using Windows version
> of R
> >> >> >> to
> >> >> >> process 4 SNP6.0 cel files.
> >> >> >> I am getting an error when trying to use this function.
> >> >> >>
> >> >> >> e.g.
> >> >> >> ae <- ArrayExplorer(csR)
> >> >> >> setColorMaps(ae, "sqrt,yellow")
> >> >> >> process(ae, verbose = log)
> >> >> >> ...
> >> >> >> Error: could not find function "process"
> >> >> >>
> >> >> >> Can anyone know why there is a problem?
> >> >> >>
> >> >> >> My R session info is:
> >> >> >>> sessionInfo()
> >> >> >> R version 2.15.1 (2012-06-22)
> >> >> >> Platform: x86_64-pc-mingw32/x64 (64-bit)
> >> >> >>
> >> >> >> locale:
> >> >> >> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
> >> >> >> States.1252LC_MONETARY=English_United States.1252
> >> >> >> [4] LC_NUMERIC=C LC_TIME=English_United
> >> >> >> States.1252
> >> >> >>
> >> >> >> attached base packages:
> >> >> >> [1] stats graphics grDevices utils datasets methods
> base
> >> >> >>
> >> >> >> other attached packages:
> >> >> >> [1] aroma.affymetrix_2.8.2 affxparser_1.30.2 aroma.apd_0.2.3
> >> >> >> R.huge_0.4.2 aroma.light_1.24.0
> >> >> >> [6] aroma.core_2.8.2 matrixStats_0.6.2 R.rsp_0.8.2
> >> >> >> R.devices_2.1.3
Re: [aroma.affymetrix] Error: could not find function "process"
On Sat, Mar 23, 2013 at 2:41 PM, Uma Shankavaram
wrote:
> Yes, I found it at the aroma.affymetrix.org site under labs.
>
> https://docs.google.com/document/d/1P8zyjvzpKvW1Zquys3DHCXCkzaENqILrOz99uTWxppk/edit
Thanks. Though, at bit before that it says/said:
log <- verbose <- Arguments$getVerbose(-8, timestamp=TRUE)
I've changed 'log' to 'verbose', because that will always work.
/H
>
> Thx
>
> Uma
>
>
> On Sat, Mar 23, 2013 at 5:32 PM, Henrik Bengtsson
> wrote:
>>
>> On Sat, Mar 23, 2013 at 2:29 PM, Uma Shankavaram
>> wrote:
>> > Dear Henrik,
>> >
>> > Thanks for the prompt fix. I have re-installed the library from the
>> > source("http://aroma-project.org/hbLite.R";)
>> > hbInstall("aroma.core")
>> >
>> > Yes, it is working now, but there is still a small glitch.
>> > It is failing if I pass the verbose argument.
>> >
>> > e.g.
>> > process(ae, verbose = log)
>> >
>> > gives an error:
>> > at #01. process(ae, verbose = log)
>> > - process() is in environment 'aroma.core'
>> >
>> > Error: Argument 'verbose' is not a vector: function
>>
>> So, here 'log' probably equals base::log. Use verbose=TRUE (default)
>> or a (negative) value, e.g. verbose=-10 (verbose=-20 shows more).
>>
>> Is there an (online?) example showing "process(ae, verbose = log)"
>> that needs to be corrected?
>>
>> /Henrik
>>
>>
>> >>
>> > However, without verbose argument, gets the result.
>> > process(ae)
>> > Color maps: sqrt,yellow
>> > Chip type: GenomeWideSNP_6.Full
>> > Samples: GSM557940, GSM557941, GSM557942
>> > Aliases: GSM557940, GSM557941, GSM557942
>> > Color maps: sqrt,yellow
>> > Chip type: GenomeWideSNP_6.Full
>> > Samples: GSM557940, GSM557941, GSM557942
>> > Aliases: GSM557940, GSM557941, GSM557942
>> > [1] FALSE
>> >
>> >
>> > Uma
>> >
>> > On Sat, Mar 23, 2013 at 5:05 PM, Henrik Bengtsson
>> > wrote:
>> >>
>> >> I've fixed this. Running.
>> >>
>> >> source("http://aroma-project.org/hbLite.R";)
>> >> hbInstall("aroma.core")
>> >>
>> >> should fix this (you'll get aroma.core v2.8.3). Please let me know if
>> >> this solved your problem.
>> >>
>> >> /Henrik
>> >>
>> >> PS. The problem appears when installing the R-forge binary of
>> >> aroma.core (which in turn is due to temporary updates in R.rsp, which
>> >> [is too much to explain]). I *think* this would only hit people who
>> >> have R-forge setup in their getOption("repos") or install directly
>> >> from R-forge, so most people would not be affected by this. I've
>> >> updated hbInstall() to never install from R-forge. FYI, don't install
>> >> from R-forge, because that contains my non-official under-construction
>> >> and non-tested updates.
>> >>
>> >>
>> >> On Sat, Mar 23, 2013 at 12:24 PM, Henrik Bengtsson
>> >> wrote:
>> >> > I can reproduce this - very odd. I'll investigate a fix it. In the
>> >> > meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
>> >> >
>> >> > install.packages("aroma.core", repos="@CRAN@")
>> >> > install.packages("aroma.affymetrix", repos="@CRAN@")
>> >> >
>> >> > (Add repos="@CRAN@" to make sure not to install from other
>> >> > repositories.)
>> >> >
>> >> > Thanks for the report,
>> >> >
>> >> > Henrik
>> >> >
>> >> > On Sat, Mar 23, 2013 at 10:16 AM, Uma Shankavaram
>> >> > wrote:
>> >> >> Hello,
>> >> >>
>> >> >> I am using aroma.affymetrix_2.8.2 package using Windows version of R
>> >> >> to
>> >> >> process 4 SNP6.0 cel files.
>> >> >> I am getting an error when trying to use this function.
>> >> >>
>> >> >> e.g.
>> >> >> ae <- ArrayExplorer(csR)
>> >> >> setColorMaps(ae, "sqrt,yellow")
>> >> >> process(ae, verbose = log)
>> >> >> ...
>> >> >> Error: could not find function "process"
>> >> >>
>> >> >> Can anyone know why there is a problem?
>> >> >>
>> >> >> My R session info is:
>> >> >>> sessionInfo()
>> >> >> R version 2.15.1 (2012-06-22)
>> >> >> Platform: x86_64-pc-mingw32/x64 (64-bit)
>> >> >>
>> >> >> locale:
>> >> >> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
>> >> >> States.1252LC_MONETARY=English_United States.1252
>> >> >> [4] LC_NUMERIC=C LC_TIME=English_United
>> >> >> States.1252
>> >> >>
>> >> >> attached base packages:
>> >> >> [1] stats graphics grDevices utils datasets methods base
>> >> >>
>> >> >> other attached packages:
>> >> >> [1] aroma.affymetrix_2.8.2 affxparser_1.30.2 aroma.apd_0.2.3
>> >> >> R.huge_0.4.2 aroma.light_1.24.0
>> >> >> [6] aroma.core_2.8.2 matrixStats_0.6.2 R.rsp_0.8.2
>> >> >> R.devices_2.1.3R.cache_0.6.8
>> >> >> [11] R.filesets_2.0.1 R.utils_1.19.5 R.oo_1.13.0
>> >> >> R.methodsS3_1.4.2
>> >> >>
>> >> >> loaded via a namespace (and not attached):
>> >> >> [1] digest_0.6.3 PSCBS_0.30.0 tools_2.15.1
>> >> >>
>> >> >>
>> >> >> Thanks
>> >> >>
>> >> >> Uma
>> >> >>
>> >> >> --
>> >> >> --
>> >> >> When reporting problems on aroma.affymetrix, make sure 1) to run the
>> >> >> latest
>> >> >> version of the package, 2) to
Re: [aroma.affymetrix] Error: could not find function "process"
Yes, I found it at the aroma.affymetrix.org site under labs.
https://docs.google.com/document/d/1P8zyjvzpKvW1Zquys3DHCXCkzaENqILrOz99uTWxppk/edit
Thx
Uma
On Sat, Mar 23, 2013 at 5:32 PM, Henrik Bengtsson <
henrik.bengts...@aroma-project.org> wrote:
> On Sat, Mar 23, 2013 at 2:29 PM, Uma Shankavaram
> wrote:
> > Dear Henrik,
> >
> > Thanks for the prompt fix. I have re-installed the library from the
> > source("http://aroma-project.org/hbLite.R";)
> > hbInstall("aroma.core")
> >
> > Yes, it is working now, but there is still a small glitch.
> > It is failing if I pass the verbose argument.
> >
> > e.g.
> > process(ae, verbose = log)
> >
> > gives an error:
> > at #01. process(ae, verbose = log)
> > - process() is in environment 'aroma.core'
> >
> > Error: Argument 'verbose' is not a vector: function
>
> So, here 'log' probably equals base::log. Use verbose=TRUE (default)
> or a (negative) value, e.g. verbose=-10 (verbose=-20 shows more).
>
> Is there an (online?) example showing "process(ae, verbose = log)"
> that needs to be corrected?
>
> /Henrik
>
>
> >>
> > However, without verbose argument, gets the result.
> > process(ae)
> > Color maps: sqrt,yellow
> > Chip type: GenomeWideSNP_6.Full
> > Samples: GSM557940, GSM557941, GSM557942
> > Aliases: GSM557940, GSM557941, GSM557942
> > Color maps: sqrt,yellow
> > Chip type: GenomeWideSNP_6.Full
> > Samples: GSM557940, GSM557941, GSM557942
> > Aliases: GSM557940, GSM557941, GSM557942
> > [1] FALSE
> >
> >
> > Uma
> >
> > On Sat, Mar 23, 2013 at 5:05 PM, Henrik Bengtsson
> > wrote:
> >>
> >> I've fixed this. Running.
> >>
> >> source("http://aroma-project.org/hbLite.R";)
> >> hbInstall("aroma.core")
> >>
> >> should fix this (you'll get aroma.core v2.8.3). Please let me know if
> >> this solved your problem.
> >>
> >> /Henrik
> >>
> >> PS. The problem appears when installing the R-forge binary of
> >> aroma.core (which in turn is due to temporary updates in R.rsp, which
> >> [is too much to explain]). I *think* this would only hit people who
> >> have R-forge setup in their getOption("repos") or install directly
> >> from R-forge, so most people would not be affected by this. I've
> >> updated hbInstall() to never install from R-forge. FYI, don't install
> >> from R-forge, because that contains my non-official under-construction
> >> and non-tested updates.
> >>
> >>
> >> On Sat, Mar 23, 2013 at 12:24 PM, Henrik Bengtsson
> >> wrote:
> >> > I can reproduce this - very odd. I'll investigate a fix it. In the
> >> > meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
> >> >
> >> > install.packages("aroma.core", repos="@CRAN@")
> >> > install.packages("aroma.affymetrix", repos="@CRAN@")
> >> >
> >> > (Add repos="@CRAN@" to make sure not to install from other
> >> > repositories.)
> >> >
> >> > Thanks for the report,
> >> >
> >> > Henrik
> >> >
> >> > On Sat, Mar 23, 2013 at 10:16 AM, Uma Shankavaram
> >> > wrote:
> >> >> Hello,
> >> >>
> >> >> I am using aroma.affymetrix_2.8.2 package using Windows version of R
> to
> >> >> process 4 SNP6.0 cel files.
> >> >> I am getting an error when trying to use this function.
> >> >>
> >> >> e.g.
> >> >> ae <- ArrayExplorer(csR)
> >> >> setColorMaps(ae, "sqrt,yellow")
> >> >> process(ae, verbose = log)
> >> >> ...
> >> >> Error: could not find function "process"
> >> >>
> >> >> Can anyone know why there is a problem?
> >> >>
> >> >> My R session info is:
> >> >>> sessionInfo()
> >> >> R version 2.15.1 (2012-06-22)
> >> >> Platform: x86_64-pc-mingw32/x64 (64-bit)
> >> >>
> >> >> locale:
> >> >> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
> >> >> States.1252LC_MONETARY=English_United States.1252
> >> >> [4] LC_NUMERIC=C LC_TIME=English_United
> >> >> States.1252
> >> >>
> >> >> attached base packages:
> >> >> [1] stats graphics grDevices utils datasets methods base
> >> >>
> >> >> other attached packages:
> >> >> [1] aroma.affymetrix_2.8.2 affxparser_1.30.2 aroma.apd_0.2.3
> >> >> R.huge_0.4.2 aroma.light_1.24.0
> >> >> [6] aroma.core_2.8.2 matrixStats_0.6.2 R.rsp_0.8.2
> >> >> R.devices_2.1.3R.cache_0.6.8
> >> >> [11] R.filesets_2.0.1 R.utils_1.19.5 R.oo_1.13.0
> >> >> R.methodsS3_1.4.2
> >> >>
> >> >> loaded via a namespace (and not attached):
> >> >> [1] digest_0.6.3 PSCBS_0.30.0 tools_2.15.1
> >> >>
> >> >>
> >> >> Thanks
> >> >>
> >> >> Uma
> >> >>
> >> >> --
> >> >> --
> >> >> When reporting problems on aroma.affymetrix, make sure 1) to run the
> >> >> latest
> >> >> version of the package, 2) to report the output of sessionInfo() and
> >> >> traceback(), and 3) to post a complete code example.
> >> >>
> >> >>
> >> >> You received this message because you are subscribed to the Google
> >> >> Groups
> >> >> "aroma.affymetrix" group with website http://www.aroma-project.org/.
> >> >> To post to this group, send email to
> aroma-affymetrix@googlegroups.com
>
Re: [aroma.affymetrix] Error: could not find function "process"
On Sat, Mar 23, 2013 at 2:29 PM, Uma Shankavaram
wrote:
> Dear Henrik,
>
> Thanks for the prompt fix. I have re-installed the library from the
> source("http://aroma-project.org/hbLite.R";)
> hbInstall("aroma.core")
>
> Yes, it is working now, but there is still a small glitch.
> It is failing if I pass the verbose argument.
>
> e.g.
> process(ae, verbose = log)
>
> gives an error:
> at #01. process(ae, verbose = log)
> - process() is in environment 'aroma.core'
>
> Error: Argument 'verbose' is not a vector: function
So, here 'log' probably equals base::log. Use verbose=TRUE (default)
or a (negative) value, e.g. verbose=-10 (verbose=-20 shows more).
Is there an (online?) example showing "process(ae, verbose = log)"
that needs to be corrected?
/Henrik
>>
> However, without verbose argument, gets the result.
> process(ae)
> Color maps: sqrt,yellow
> Chip type: GenomeWideSNP_6.Full
> Samples: GSM557940, GSM557941, GSM557942
> Aliases: GSM557940, GSM557941, GSM557942
> Color maps: sqrt,yellow
> Chip type: GenomeWideSNP_6.Full
> Samples: GSM557940, GSM557941, GSM557942
> Aliases: GSM557940, GSM557941, GSM557942
> [1] FALSE
>
>
> Uma
>
> On Sat, Mar 23, 2013 at 5:05 PM, Henrik Bengtsson
> wrote:
>>
>> I've fixed this. Running.
>>
>> source("http://aroma-project.org/hbLite.R";)
>> hbInstall("aroma.core")
>>
>> should fix this (you'll get aroma.core v2.8.3). Please let me know if
>> this solved your problem.
>>
>> /Henrik
>>
>> PS. The problem appears when installing the R-forge binary of
>> aroma.core (which in turn is due to temporary updates in R.rsp, which
>> [is too much to explain]). I *think* this would only hit people who
>> have R-forge setup in their getOption("repos") or install directly
>> from R-forge, so most people would not be affected by this. I've
>> updated hbInstall() to never install from R-forge. FYI, don't install
>> from R-forge, because that contains my non-official under-construction
>> and non-tested updates.
>>
>>
>> On Sat, Mar 23, 2013 at 12:24 PM, Henrik Bengtsson
>> wrote:
>> > I can reproduce this - very odd. I'll investigate a fix it. In the
>> > meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
>> >
>> > install.packages("aroma.core", repos="@CRAN@")
>> > install.packages("aroma.affymetrix", repos="@CRAN@")
>> >
>> > (Add repos="@CRAN@" to make sure not to install from other
>> > repositories.)
>> >
>> > Thanks for the report,
>> >
>> > Henrik
>> >
>> > On Sat, Mar 23, 2013 at 10:16 AM, Uma Shankavaram
>> > wrote:
>> >> Hello,
>> >>
>> >> I am using aroma.affymetrix_2.8.2 package using Windows version of R to
>> >> process 4 SNP6.0 cel files.
>> >> I am getting an error when trying to use this function.
>> >>
>> >> e.g.
>> >> ae <- ArrayExplorer(csR)
>> >> setColorMaps(ae, "sqrt,yellow")
>> >> process(ae, verbose = log)
>> >> ...
>> >> Error: could not find function "process"
>> >>
>> >> Can anyone know why there is a problem?
>> >>
>> >> My R session info is:
>> >>> sessionInfo()
>> >> R version 2.15.1 (2012-06-22)
>> >> Platform: x86_64-pc-mingw32/x64 (64-bit)
>> >>
>> >> locale:
>> >> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
>> >> States.1252LC_MONETARY=English_United States.1252
>> >> [4] LC_NUMERIC=C LC_TIME=English_United
>> >> States.1252
>> >>
>> >> attached base packages:
>> >> [1] stats graphics grDevices utils datasets methods base
>> >>
>> >> other attached packages:
>> >> [1] aroma.affymetrix_2.8.2 affxparser_1.30.2 aroma.apd_0.2.3
>> >> R.huge_0.4.2 aroma.light_1.24.0
>> >> [6] aroma.core_2.8.2 matrixStats_0.6.2 R.rsp_0.8.2
>> >> R.devices_2.1.3R.cache_0.6.8
>> >> [11] R.filesets_2.0.1 R.utils_1.19.5 R.oo_1.13.0
>> >> R.methodsS3_1.4.2
>> >>
>> >> loaded via a namespace (and not attached):
>> >> [1] digest_0.6.3 PSCBS_0.30.0 tools_2.15.1
>> >>
>> >>
>> >> Thanks
>> >>
>> >> Uma
>> >>
>> >> --
>> >> --
>> >> When reporting problems on aroma.affymetrix, make sure 1) to run the
>> >> latest
>> >> version of the package, 2) to report the output of sessionInfo() and
>> >> traceback(), and 3) to post a complete code example.
>> >>
>> >>
>> >> You received this message because you are subscribed to the Google
>> >> Groups
>> >> "aroma.affymetrix" group with website http://www.aroma-project.org/.
>> >> To post to this group, send email to aroma-affymetrix@googlegroups.com
>> >> To unsubscribe and other options, go to
>> >> http://www.aroma-project.org/forum/
>> >>
>> >> ---
>> >> You received this message because you are subscribed to the Google
>> >> Groups
>> >> "aroma.affymetrix" group.
>> >> To unsubscribe from this group and stop receiving emails from it, send
>> >> an
>> >> email to aroma-affymetrix+unsubscr...@googlegroups.com.
>> >> For more options, visit https://groups.google.com/groups/opt_out.
>> >>
>> >>
>>
>> --
>> --
>> When reporting problems on aroma.affymetrix, make sure 1) to run t
Re: [aroma.affymetrix] Error: could not find function "process"
Dear Henrik,
Thanks for the prompt fix. I have re-installed the library from the
source("http://aroma-project.org/hbLite.R";)
hbInstall("aroma.core")
Yes, it is working now, but there is still a small glitch.
It is failing if I pass the verbose argument.
e.g.
process(ae, verbose = log)
gives an error:
at #01. process(ae, verbose = log)
- process() is in environment 'aroma.core'
Error: Argument 'verbose' is not a vector: function
>
However, without verbose argument, gets the result.
process(ae)
Color maps: sqrt,yellow
Chip type: GenomeWideSNP_6.Full
Samples: GSM557940, GSM557941, GSM557942
Aliases: GSM557940, GSM557941, GSM557942
Color maps: sqrt,yellow
Chip type: GenomeWideSNP_6.Full
Samples: GSM557940, GSM557941, GSM557942
Aliases: GSM557940, GSM557941, GSM557942
[1] FALSE
Uma
On Sat, Mar 23, 2013 at 5:05 PM, Henrik Bengtsson <
henrik.bengts...@aroma-project.org> wrote:
> I've fixed this. Running.
>
> source("http://aroma-project.org/hbLite.R";)
> hbInstall("aroma.core")
>
> should fix this (you'll get aroma.core v2.8.3). Please let me know if
> this solved your problem.
>
> /Henrik
>
> PS. The problem appears when installing the R-forge binary of
> aroma.core (which in turn is due to temporary updates in R.rsp, which
> [is too much to explain]). I *think* this would only hit people who
> have R-forge setup in their getOption("repos") or install directly
> from R-forge, so most people would not be affected by this. I've
> updated hbInstall() to never install from R-forge. FYI, don't install
> from R-forge, because that contains my non-official under-construction
> and non-tested updates.
>
>
> On Sat, Mar 23, 2013 at 12:24 PM, Henrik Bengtsson
> wrote:
> > I can reproduce this - very odd. I'll investigate a fix it. In the
> > meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
> >
> > install.packages("aroma.core", repos="@CRAN@")
> > install.packages("aroma.affymetrix", repos="@CRAN@")
> >
> > (Add repos="@CRAN@" to make sure not to install from other
> repositories.)
> >
> > Thanks for the report,
> >
> > Henrik
> >
> > On Sat, Mar 23, 2013 at 10:16 AM, Uma Shankavaram
> > wrote:
> >> Hello,
> >>
> >> I am using aroma.affymetrix_2.8.2 package using Windows version of R to
> >> process 4 SNP6.0 cel files.
> >> I am getting an error when trying to use this function.
> >>
> >> e.g.
> >> ae <- ArrayExplorer(csR)
> >> setColorMaps(ae, "sqrt,yellow")
> >> process(ae, verbose = log)
> >> ...
> >> Error: could not find function "process"
> >>
> >> Can anyone know why there is a problem?
> >>
> >> My R session info is:
> >>> sessionInfo()
> >> R version 2.15.1 (2012-06-22)
> >> Platform: x86_64-pc-mingw32/x64 (64-bit)
> >>
> >> locale:
> >> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
> >> States.1252LC_MONETARY=English_United States.1252
> >> [4] LC_NUMERIC=C LC_TIME=English_United
> >> States.1252
> >>
> >> attached base packages:
> >> [1] stats graphics grDevices utils datasets methods base
> >>
> >> other attached packages:
> >> [1] aroma.affymetrix_2.8.2 affxparser_1.30.2 aroma.apd_0.2.3
> >> R.huge_0.4.2 aroma.light_1.24.0
> >> [6] aroma.core_2.8.2 matrixStats_0.6.2 R.rsp_0.8.2
> >> R.devices_2.1.3R.cache_0.6.8
> >> [11] R.filesets_2.0.1 R.utils_1.19.5 R.oo_1.13.0
> >> R.methodsS3_1.4.2
> >>
> >> loaded via a namespace (and not attached):
> >> [1] digest_0.6.3 PSCBS_0.30.0 tools_2.15.1
> >>
> >>
> >> Thanks
> >>
> >> Uma
> >>
> >> --
> >> --
> >> When reporting problems on aroma.affymetrix, make sure 1) to run the
> latest
> >> version of the package, 2) to report the output of sessionInfo() and
> >> traceback(), and 3) to post a complete code example.
> >>
> >>
> >> You received this message because you are subscribed to the Google
> Groups
> >> "aroma.affymetrix" group with website http://www.aroma-project.org/.
> >> To post to this group, send email to aroma-affymetrix@googlegroups.com
> >> To unsubscribe and other options, go to
> http://www.aroma-project.org/forum/
> >>
> >> ---
> >> You received this message because you are subscribed to the Google
> Groups
> >> "aroma.affymetrix" group.
> >> To unsubscribe from this group and stop receiving emails from it, send
> an
> >> email to aroma-affymetrix+unsubscr...@googlegroups.com.
> >> For more options, visit https://groups.google.com/groups/opt_out.
> >>
> >>
>
> --
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the
> latest version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
> You received this message because you are subscribed to the Google Groups
> "aroma.affymetrix" group with website http://www.aroma-project.org/.
> To post to this group, send email to aroma-affymetrix@googlegroups.com
> To unsubscribe and other options, go to
> http://www.aroma-project.org/forum/
>
> ---
> You r
Re: [aroma.affymetrix] Error: could not find function "process"
I've fixed this. Running.
source("http://aroma-project.org/hbLite.R";)
hbInstall("aroma.core")
should fix this (you'll get aroma.core v2.8.3). Please let me know if
this solved your problem.
/Henrik
PS. The problem appears when installing the R-forge binary of
aroma.core (which in turn is due to temporary updates in R.rsp, which
[is too much to explain]). I *think* this would only hit people who
have R-forge setup in their getOption("repos") or install directly
from R-forge, so most people would not be affected by this. I've
updated hbInstall() to never install from R-forge. FYI, don't install
from R-forge, because that contains my non-official under-construction
and non-tested updates.
On Sat, Mar 23, 2013 at 12:24 PM, Henrik Bengtsson
wrote:
> I can reproduce this - very odd. I'll investigate a fix it. In the
> meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
>
> install.packages("aroma.core", repos="@CRAN@")
> install.packages("aroma.affymetrix", repos="@CRAN@")
>
> (Add repos="@CRAN@" to make sure not to install from other repositories.)
>
> Thanks for the report,
>
> Henrik
>
> On Sat, Mar 23, 2013 at 10:16 AM, Uma Shankavaram
> wrote:
>> Hello,
>>
>> I am using aroma.affymetrix_2.8.2 package using Windows version of R to
>> process 4 SNP6.0 cel files.
>> I am getting an error when trying to use this function.
>>
>> e.g.
>> ae <- ArrayExplorer(csR)
>> setColorMaps(ae, "sqrt,yellow")
>> process(ae, verbose = log)
>> ...
>> Error: could not find function "process"
>>
>> Can anyone know why there is a problem?
>>
>> My R session info is:
>>> sessionInfo()
>> R version 2.15.1 (2012-06-22)
>> Platform: x86_64-pc-mingw32/x64 (64-bit)
>>
>> locale:
>> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
>> States.1252LC_MONETARY=English_United States.1252
>> [4] LC_NUMERIC=C LC_TIME=English_United
>> States.1252
>>
>> attached base packages:
>> [1] stats graphics grDevices utils datasets methods base
>>
>> other attached packages:
>> [1] aroma.affymetrix_2.8.2 affxparser_1.30.2 aroma.apd_0.2.3
>> R.huge_0.4.2 aroma.light_1.24.0
>> [6] aroma.core_2.8.2 matrixStats_0.6.2 R.rsp_0.8.2
>> R.devices_2.1.3R.cache_0.6.8
>> [11] R.filesets_2.0.1 R.utils_1.19.5 R.oo_1.13.0
>> R.methodsS3_1.4.2
>>
>> loaded via a namespace (and not attached):
>> [1] digest_0.6.3 PSCBS_0.30.0 tools_2.15.1
>>
>>
>> Thanks
>>
>> Uma
>>
>> --
>> --
>> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
>> version of the package, 2) to report the output of sessionInfo() and
>> traceback(), and 3) to post a complete code example.
>>
>>
>> You received this message because you are subscribed to the Google Groups
>> "aroma.affymetrix" group with website http://www.aroma-project.org/.
>> To post to this group, send email to aroma-affymetrix@googlegroups.com
>> To unsubscribe and other options, go to http://www.aroma-project.org/forum/
>>
>> ---
>> You received this message because you are subscribed to the Google Groups
>> "aroma.affymetrix" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to aroma-affymetrix+unsubscr...@googlegroups.com.
>> For more options, visit https://groups.google.com/groups/opt_out.
>>
>>
--
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
---
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to aroma-affymetrix+unsubscr...@googlegroups.com.
For more options, visit https://groups.google.com/groups/opt_out.
Re: [aroma.affymetrix] Error: could not find function "process"
I can reproduce this - very odd. I'll investigate a fix it. In the
meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
install.packages("aroma.core", repos="@CRAN@")
install.packages("aroma.affymetrix", repos="@CRAN@")
(Add repos="@CRAN@" to make sure not to install from other repositories.)
Thanks for the report,
Henrik
On Sat, Mar 23, 2013 at 10:16 AM, Uma Shankavaram
wrote:
> Hello,
>
> I am using aroma.affymetrix_2.8.2 package using Windows version of R to
> process 4 SNP6.0 cel files.
> I am getting an error when trying to use this function.
>
> e.g.
> ae <- ArrayExplorer(csR)
> setColorMaps(ae, "sqrt,yellow")
> process(ae, verbose = log)
> ...
> Error: could not find function "process"
>
> Can anyone know why there is a problem?
>
> My R session info is:
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-pc-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
> States.1252LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C LC_TIME=English_United
> States.1252
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] aroma.affymetrix_2.8.2 affxparser_1.30.2 aroma.apd_0.2.3
> R.huge_0.4.2 aroma.light_1.24.0
> [6] aroma.core_2.8.2 matrixStats_0.6.2 R.rsp_0.8.2
> R.devices_2.1.3R.cache_0.6.8
> [11] R.filesets_2.0.1 R.utils_1.19.5 R.oo_1.13.0
> R.methodsS3_1.4.2
>
> loaded via a namespace (and not attached):
> [1] digest_0.6.3 PSCBS_0.30.0 tools_2.15.1
>
>
> Thanks
>
> Uma
>
> --
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
> You received this message because you are subscribed to the Google Groups
> "aroma.affymetrix" group with website http://www.aroma-project.org/.
> To post to this group, send email to aroma-affymetrix@googlegroups.com
> To unsubscribe and other options, go to http://www.aroma-project.org/forum/
>
> ---
> You received this message because you are subscribed to the Google Groups
> "aroma.affymetrix" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to aroma-affymetrix+unsubscr...@googlegroups.com.
> For more options, visit https://groups.google.com/groups/opt_out.
>
>
--
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
---
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to aroma-affymetrix+unsubscr...@googlegroups.com.
For more options, visit https://groups.google.com/groups/opt_out.
